Wall clock time and date at job start Sun Mar 29 2020 23:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99665 * 2 1 4 4 H 1.48505 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47199 * 299.99847 * 3 2 1 6 6 H 1.48500 * 109.47533 * 60.00152 * 3 2 1 7 7 C 1.37871 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00156 * 187.35206 * 7 2 1 9 9 C 1.50704 * 119.99904 * 7.34218 * 7 2 1 10 10 C 1.52994 * 115.55078 * 271.48682 * 9 7 2 11 11 N 1.46493 * 109.47332 * 278.98914 * 10 9 7 12 12 C 1.34781 * 119.99885 * 175.50010 * 11 10 9 13 13 O 1.21279 * 120.00285 * 4.92946 * 12 11 10 14 14 C 1.50700 * 120.00004 * 184.92552 * 12 11 10 15 15 C 1.55932 * 115.92217 * 298.11027 * 14 12 11 16 16 C 1.58476 * 103.90568 * 199.43051 * 15 14 12 17 17 C 1.55931 * 103.90651 * 359.97438 * 16 15 14 18 18 C 1.55930 * 104.49636 * 289.45646 * 17 16 15 19 19 C 1.54577 * 104.64442 * 71.08716 * 18 17 16 20 20 C 1.56955 * 101.40968 * 33.75191 * 17 16 15 21 21 C 1.52998 * 117.51147 * 57.19323 * 9 7 2 22 22 C 1.52996 * 117.49350 * 125.81759 * 9 7 2 23 23 H 0.96996 * 119.99820 * 4.99732 * 1 2 3 24 24 H 1.09005 * 109.47156 * 158.98913 * 10 9 7 25 25 H 1.09007 * 109.47064 * 38.99637 * 10 9 7 26 26 H 0.97000 * 120.00201 * 355.23127 * 11 10 9 27 27 H 1.09004 * 110.39853 * 318.76067 * 15 14 12 28 28 H 1.08997 * 110.39961 * 81.17659 * 15 14 12 29 29 H 1.09004 * 110.98338 * 241.33923 * 16 15 14 30 30 H 1.08993 * 110.62601 * 118.48642 * 16 15 14 31 31 H 1.09000 * 115.91844 * 160.57021 * 17 16 15 32 32 H 1.08999 * 110.40272 * 312.29276 * 18 17 16 33 33 H 1.09004 * 110.49539 * 189.92858 * 18 17 16 34 34 H 1.09002 * 110.40007 * 241.20930 * 19 18 17 35 35 H 1.08998 * 110.50449 * 118.84069 * 19 18 17 36 36 H 1.08999 * 112.02748 * 189.49822 * 20 17 16 37 37 H 1.08997 * 112.02545 * 62.97476 * 20 17 16 38 38 H 1.09008 * 117.49271 * 214.96740 * 21 9 7 39 39 H 1.08997 * 117.50535 * 359.97438 * 21 9 7 40 40 H 1.08999 * 117.50426 * 359.97438 * 22 9 7 41 41 H 1.09007 * 117.49855 * 144.97501 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0780 -1.1978 0.1192 9 6 1.2604 -2.4937 -0.1679 10 6 0.7509 -3.1336 1.1250 11 7 1.8444 -3.8617 1.7734 12 6 1.6520 -4.4327 2.9790 13 8 0.5507 -4.4213 3.4867 14 6 2.8055 -5.0856 3.6962 15 6 3.4627 -6.2978 2.9681 16 6 4.2351 -7.0619 4.1218 17 6 3.9438 -6.2107 5.3954 18 6 4.7554 -4.8967 5.1807 19 6 4.0019 -4.1514 4.0554 20 6 2.4875 -5.7032 5.1032 21 6 0.4035 -2.6607 -1.4244 22 6 1.7184 -3.4308 -1.2872 23 1 -0.4850 0.8368 -0.0732 24 1 -0.0591 -3.8253 0.8935 25 1 0.3842 -2.3561 1.7953 26 1 2.7056 -3.9361 1.3334 27 1 2.6979 -6.9312 2.5187 28 1 4.1639 -5.9506 2.2092 29 1 5.3062 -7.0911 3.9215 30 1 3.8441 -8.0722 4.2418 31 1 4.0959 -6.7143 6.3500 32 1 5.7742 -5.1260 4.8686 33 1 4.7634 -4.2997 6.0927 34 1 4.6504 -4.0144 3.1900 35 1 3.6378 -3.1882 4.4127 36 1 2.1671 -4.9463 5.8191 37 1 1.7741 -6.5246 5.0369 38 1 -0.5234 -3.2266 -1.3298 39 1 0.3775 -1.8304 -2.1300 40 1 2.5577 -3.1071 -1.9028 41 1 1.6571 -4.5033 -1.1024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582397290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:41 Heat of formation + Delta-G solvation = -41.594404 kcal Electronic energy + Delta-G solvation = -20432.881054 eV Core-core repulsion = 17504.829757 eV Total energy + Delta-G solvation = -2928.051297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61408 -39.68378 -38.38267 -34.99490 -33.95439 -31.16269 -30.91558 -28.59048 -28.11750 -27.00774 -23.23259 -23.09314 -22.66288 -21.24985 -20.43630 -19.84481 -18.38066 -17.70360 -16.79068 -16.68807 -16.43838 -15.91954 -15.83942 -15.49271 -15.10555 -14.52020 -13.76177 -13.71723 -13.46171 -13.38815 -13.18741 -13.01429 -12.81737 -12.61017 -12.37470 -12.14460 -12.06982 -11.95769 -11.86706 -11.77677 -11.53758 -11.24972 -10.87508 -10.85366 -10.79560 -10.47669 -10.03028 -9.90854 -8.13492 -6.25834 1.39218 1.42665 1.52303 1.64434 2.33672 2.41553 3.15916 3.36089 3.46455 3.56050 3.59506 4.03647 4.20042 4.23056 4.26567 4.40851 4.48582 4.53710 4.58848 4.60283 4.60676 4.68220 4.70713 4.84991 4.95810 5.00903 5.04477 5.10198 5.15780 5.21280 5.24859 5.26535 5.37243 5.41341 5.47061 5.55587 5.60827 5.65784 5.75763 6.34408 6.72990 6.82451 7.34812 7.44036 8.95358 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.005346 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.725672 B = 5235.910138 C = 5669.438395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.289 1.289 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.001 3.999 10 C 0.180 3.820 11 N -0.697 5.697 12 C 0.528 3.472 13 O -0.599 6.599 14 C -0.109 4.109 15 C -0.106 4.106 16 C -0.108 4.108 17 C -0.093 4.093 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.101 4.101 21 C -0.156 4.156 22 C -0.173 4.173 23 H 0.259 0.741 24 H 0.030 0.970 25 H 0.026 0.974 26 H 0.409 0.591 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.093 -13.053 6.865 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.178 4.178 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.001 3.999 10 C 0.056 3.944 11 N -0.346 5.346 12 C 0.316 3.684 13 O -0.481 6.481 14 C -0.112 4.112 15 C -0.144 4.144 16 C -0.146 4.146 17 C -0.111 4.111 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.139 4.139 21 C -0.194 4.194 22 C -0.210 4.210 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.245 0.755 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.180 -12.880 7.254 18.534 hybrid contribution -0.266 1.533 -0.447 1.619 sum 10.914 -11.347 6.807 17.152 Atomic orbital electron populations 1.70158 1.07263 1.27405 1.49787 1.25708 0.95460 1.02147 0.94476 0.85662 0.79525 0.80151 0.77248 1.18560 1.20604 1.21584 1.20729 0.93108 0.89935 1.50288 0.92075 1.19069 1.00144 0.94752 0.85981 1.20623 0.87676 0.92019 0.94123 1.45911 1.16308 1.53032 1.19328 1.20613 0.89364 0.77615 0.80851 1.90622 1.28010 1.61532 1.67921 1.22931 0.92974 0.97938 0.97392 1.23267 0.98872 0.94097 0.98120 1.23250 1.00697 0.98113 0.92513 1.23604 0.92473 0.95928 0.99137 1.22617 0.99145 0.95745 0.97436 1.22616 0.94741 0.96940 1.00309 1.23355 0.98123 0.99156 0.93285 1.22411 0.93403 1.01079 1.02534 1.22996 0.97620 0.96465 1.03888 0.93198 0.95155 0.95511 0.75546 0.92267 0.89803 0.89239 0.90739 0.85996 0.89266 0.91437 0.90029 0.93724 0.92535 0.91736 0.91240 0.91754 0.89282 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.33 12.80 21.45 0.27 -52.05 16 2 C 0.02 1.22 5.36 84.65 0.45 1.67 16 3 Si 0.95 42.84 29.55 68.60 2.03 44.86 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.50 -26.27 8.84 25.60 0.23 -26.05 16 8 H 0.06 3.11 7.82 -2.91 -0.02 3.08 16 9 C 0.00 0.06 1.42 -52.93 -0.07 -0.01 16 10 C 0.18 8.52 5.57 86.38 0.48 9.00 16 11 N -0.70 -27.09 5.51 -463.07 -2.55 -29.64 16 12 C 0.53 20.43 7.20 87.66 0.63 21.06 16 13 O -0.60 -28.65 16.52 -3.02 -0.05 -28.70 16 14 C -0.11 -3.02 1.27 -49.50 -0.06 -3.08 16 15 C -0.11 -2.18 6.07 33.57 0.20 -1.98 16 16 C -0.11 -1.61 6.41 33.57 0.22 -1.40 16 17 C -0.09 -1.54 5.14 -7.38 -0.04 -1.58 16 18 C -0.11 -1.91 6.21 32.15 0.20 -1.71 16 19 C -0.11 -2.58 5.86 32.16 0.19 -2.39 16 20 C -0.10 -2.56 5.68 33.36 0.19 -2.37 16 21 C -0.16 -7.15 9.21 30.59 0.28 -6.87 16 22 C -0.17 -6.74 9.81 30.59 0.30 -6.44 16 23 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 24 H 0.03 1.45 7.94 -2.38 -0.02 1.43 16 25 H 0.03 1.50 8.12 -2.38 -0.02 1.48 16 26 H 0.41 13.75 8.39 -92.71 -0.78 12.97 16 27 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.08 1.51 7.80 -2.39 -0.02 1.49 16 29 H 0.09 1.01 7.82 -2.38 -0.02 0.99 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.17 7.81 -2.39 -0.02 1.15 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.08 1.75 7.80 -2.39 -0.02 1.73 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 3.06 8.08 -2.38 -0.02 3.04 16 39 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 Total: -1.00 -65.74 331.06 3.12 -62.62 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.22 Total: 25.05 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.20 Total: -22.14 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.28 Total: -81.69 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.05 Total: -28.70 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.74 3.12 -62.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582397290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.027 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds