Wall clock time and date at job start Mon Mar 30 2020 00:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34774 * 125.75462 * 2 1 4 4 C 1.40643 * 106.63723 * 180.02562 * 3 2 1 5 5 C 1.34892 * 107.16166 * 359.96298 * 4 3 2 6 6 O 1.33831 * 108.29895 * 0.05224 * 5 4 3 7 7 C 1.50935 * 123.89978 * 180.11301 * 5 4 3 8 8 C 1.53338 * 108.42727 * 16.67007 * 7 5 4 9 9 C 1.53000 * 109.45280 * 189.95671 * 8 7 5 10 10 C 1.52996 * 109.45893 * 69.99107 * 8 7 5 11 11 C 1.53122 * 109.53428 * 309.97198 * 8 7 5 12 12 C 1.50647 * 128.28006 * 179.86203 * 4 3 2 13 13 H 1.08997 * 109.67804 * 76.71398 * 12 4 3 14 14 N 1.46903 * 109.67933 * 316.19401 * 12 4 3 15 15 C 1.46895 * 111.00034 * 84.99894 * 14 12 4 16 16 C 1.50701 * 109.47103 * 179.97438 * 15 14 12 17 17 H 1.07995 * 119.99752 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99831 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00472 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99696 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47293 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47337 * 119.99902 * 20 18 16 23 23 H 1.48502 * 109.46811 * 239.99920 * 20 18 16 24 24 H 1.08999 * 109.47497 * 89.99845 * 1 2 3 25 25 H 1.09006 * 109.47391 * 209.99988 * 1 2 3 26 26 H 1.08997 * 109.47614 * 329.99498 * 1 2 3 27 27 H 1.08000 * 126.68125 * 359.75059 * 3 2 1 28 28 H 1.09007 * 109.66952 * 136.38589 * 7 5 4 29 29 H 1.08994 * 109.67013 * 256.91064 * 7 5 4 30 30 H 1.09003 * 109.47042 * 180.02562 * 9 8 7 31 31 H 1.09001 * 109.47624 * 300.06077 * 9 8 7 32 32 H 1.08997 * 109.47328 * 60.06464 * 9 8 7 33 33 H 1.09007 * 109.46902 * 299.93228 * 10 8 7 34 34 H 1.08998 * 109.47445 * 59.93310 * 10 8 7 35 35 H 1.09004 * 109.47187 * 179.97438 * 10 8 7 36 36 H 1.09009 * 109.47952 * 310.02845 * 11 8 7 37 37 H 1.09007 * 109.49212 * 190.00542 * 11 8 7 38 38 H 1.00901 * 110.99400 * 208.95137 * 14 12 4 39 39 H 1.09002 * 109.47322 * 299.99530 * 15 14 12 40 40 H 1.09006 * 109.47199 * 59.99604 * 15 14 12 41 41 H 0.97007 * 120.00567 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2944 1.0937 0.0000 4 6 3.6233 0.6331 -0.0006 5 6 3.5773 -0.7150 -0.0001 6 8 2.2930 -1.0916 -0.0004 7 6 4.8006 -1.5991 0.0020 8 6 6.0092 -0.7533 0.4206 9 6 7.2938 -1.5528 0.1936 10 6 5.8893 -0.3913 1.9023 11 6 6.0515 0.5285 -0.4159 12 6 4.8924 1.4448 -0.0037 13 1 5.0757 1.8433 0.9941 14 7 4.7702 2.5504 -0.9633 15 6 4.1075 3.7090 -0.3499 16 6 4.0008 4.8206 -1.3618 17 1 4.3872 4.6805 -2.3605 18 6 3.4101 6.0164 -1.0126 19 7 2.9401 6.1872 0.2037 20 14 3.2773 7.3941 -2.2671 21 1 3.8779 6.9534 -3.5518 22 1 1.8474 7.7341 -2.4796 23 1 4.0016 8.5902 -1.7672 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9685 2.1234 -0.0038 28 1 4.6617 -2.4161 0.7102 29 1 4.9632 -2.0028 -0.9973 30 1 8.1531 -0.9520 0.4916 31 1 7.2639 -2.4654 0.7890 32 1 7.3797 -1.8103 -0.8620 33 1 4.9743 0.1787 2.0641 34 1 5.8591 -1.3037 2.4980 35 1 6.7485 0.2095 2.2002 36 1 5.9577 0.2765 -1.4723 37 1 6.9983 1.0417 -0.2474 38 1 5.6718 2.8057 -1.3374 39 1 3.1096 3.4229 -0.0175 40 1 4.6911 4.0510 0.5049 41 1 2.5248 7.0287 0.4496 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583494986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:28 Heat of formation + Delta-G solvation = -24.081718 kcal Electronic energy + Delta-G solvation = -20552.358544 eV Core-core repulsion = 17625.066654 eV Total energy + Delta-G solvation = -2927.291890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.68134 -39.83515 -36.92573 -34.77873 -33.69960 -32.77941 -30.69759 -29.51870 -28.21586 -27.69945 -25.58794 -24.02567 -23.55718 -22.21208 -20.61729 -18.93764 -18.46757 -17.46400 -17.29996 -16.74566 -16.26690 -15.85639 -15.55951 -15.13097 -14.82495 -14.66584 -14.13047 -14.06450 -13.84812 -13.72961 -13.61082 -13.31946 -12.99618 -12.82979 -12.70487 -12.64006 -12.60698 -12.41480 -12.29942 -12.10243 -11.58965 -11.54513 -11.45957 -11.04131 -10.69371 -10.46854 -9.16814 -8.95554 -8.23965 -6.35059 0.80593 1.38342 1.39210 1.53253 1.70658 1.96852 2.38201 3.08868 3.50945 3.65270 3.70958 3.82928 4.07422 4.08412 4.21942 4.35304 4.48204 4.51655 4.53683 4.61615 4.68426 4.75494 4.85426 4.88791 4.91647 4.96499 5.00153 5.08867 5.16463 5.17208 5.21730 5.25632 5.34963 5.45431 5.47077 5.54118 5.60752 5.70377 6.02525 6.29347 6.45630 6.73302 6.89874 7.35648 8.87793 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.005956 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.683121 B = 4700.121822 C = 5762.169359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.034 4.034 3 C -0.216 4.216 4 C -0.168 4.168 5 C -0.027 4.027 6 O -0.176 6.176 7 C -0.017 4.017 8 C -0.050 4.050 9 C -0.132 4.132 10 C -0.146 4.146 11 C -0.104 4.104 12 C 0.152 3.848 13 H 0.024 0.976 14 N -0.680 5.680 15 C 0.209 3.791 16 C -0.533 4.533 17 H 0.062 0.938 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.276 1.276 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.336 0.664 39 H 0.011 0.989 40 H -0.049 1.049 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 -17.868 0.947 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C -0.236 4.236 4 C -0.170 4.170 5 C -0.077 4.077 6 O -0.074 6.074 7 C -0.054 4.054 8 C -0.051 4.051 9 C -0.189 4.189 10 C -0.203 4.203 11 C -0.142 4.142 12 C 0.042 3.958 13 H 0.042 0.958 14 N -0.311 5.311 15 C 0.082 3.918 16 C -0.572 4.572 17 H 0.080 0.920 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.201 1.201 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.154 0.846 39 H 0.029 0.971 40 H -0.031 1.031 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.290 -18.274 0.773 18.584 hybrid contribution 0.168 2.082 0.327 2.114 sum 3.458 -16.192 1.099 16.593 Atomic orbital electron populations 1.20368 0.82502 1.04793 1.04370 1.22976 0.95242 0.83105 1.07007 1.21499 0.94047 0.99074 1.08953 1.20233 0.95275 0.93861 1.07624 1.22741 0.83902 0.94010 1.07049 1.83776 1.16411 1.34848 1.72318 1.20445 0.85194 0.95619 1.04154 1.20531 0.95347 0.94063 0.95133 1.21792 0.94312 0.99921 1.02857 1.21976 1.01127 1.01981 0.95245 1.21864 0.96318 0.95330 1.00643 1.19953 0.91641 0.90906 0.93286 0.95812 1.60505 1.26023 1.08519 1.36064 1.19322 0.93079 0.87240 0.92174 1.21564 1.38614 0.98449 0.98535 0.91983 1.25946 0.94818 1.01348 0.97529 1.70107 1.40557 1.26392 1.20399 0.85281 0.77953 0.78158 0.78874 1.18735 1.20342 1.20139 0.89190 0.88659 0.89299 0.86217 0.87962 0.88178 0.91704 0.90564 0.91430 0.95065 0.90649 0.92131 0.90807 0.90551 0.84635 0.97109 1.03120 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.60 10.42 71.23 0.74 -0.86 16 2 C -0.03 -1.19 7.33 24.89 0.18 -1.01 16 3 C -0.22 -9.29 10.01 22.06 0.22 -9.07 16 4 C -0.17 -6.69 4.85 -20.06 -0.10 -6.79 16 5 C -0.03 -0.88 6.77 24.99 0.17 -0.71 16 6 O -0.18 -5.99 10.65 -0.14 0.00 -5.99 16 7 C -0.02 -0.40 5.05 30.04 0.15 -0.24 16 8 C -0.05 -1.10 0.77 -52.03 -0.04 -1.14 16 9 C -0.13 -1.95 8.45 71.98 0.61 -1.34 16 10 C -0.15 -3.44 7.71 71.98 0.56 -2.89 16 11 C -0.10 -2.95 4.16 30.77 0.13 -2.82 16 12 C 0.15 5.97 2.21 44.28 0.10 6.07 16 13 H 0.02 1.04 6.67 -2.39 -0.02 1.03 16 14 N -0.68 -31.59 6.24 -498.86 -3.11 -34.70 16 15 C 0.21 11.85 5.16 85.56 0.44 12.29 16 16 C -0.53 -31.62 9.32 25.60 0.24 -31.38 16 17 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 18 C 0.00 0.09 5.46 84.66 0.46 0.56 16 19 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 20 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 21 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.12 5.93 5.98 -2.91 -0.02 5.91 16 28 H 0.10 1.86 8.12 -2.38 -0.02 1.84 16 29 H 0.10 1.96 8.12 -2.39 -0.02 1.94 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.03 0.94 5.61 -2.38 -0.01 0.93 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.07 2.10 8.12 -2.38 -0.02 2.08 16 37 H 0.08 1.98 8.12 -2.38 -0.02 1.96 16 38 H 0.34 14.50 8.38 -89.69 -0.75 13.74 16 39 H 0.01 0.67 5.34 -2.39 -0.01 0.66 16 40 H -0.05 -3.00 8.06 -2.38 -0.02 -3.01 16 41 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -71.73 322.44 3.32 -68.41 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.26 Total: 21.82 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 3.86 Total: -39.33 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -2.83 Total: -92.36 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: 0.00 Total: -5.99 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -71.73 3.32 -68.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583494986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.324 kcal (2) G-P(sol) polarization free energy of solvation -71.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds