Wall clock time and date at job start Mon Mar 30 2020 00:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47162 * 2 1 4 4 C 1.34512 * 125.78946 * 90.00302 * 3 2 1 5 5 C 1.41385 * 106.83968 * 179.74928 * 4 3 2 6 6 C 1.34515 * 106.83909 * 0.37109 * 5 4 3 7 7 C 1.50704 * 125.78390 * 179.88761 * 6 5 4 8 8 N 1.46898 * 109.46923 * 89.71763 * 7 6 5 9 9 C 1.46847 * 110.99897 * 169.99458 * 8 7 6 10 10 C 1.53034 * 109.51345 * 174.16738 * 9 8 7 11 11 C 1.53099 * 109.29509 * 59.18740 * 10 9 8 12 12 C 1.50694 * 109.57939 * 182.40274 * 11 10 9 13 13 H 1.08004 * 119.99655 * 119.71001 * 12 11 10 14 14 C 1.37875 * 120.00437 * 299.70654 * 12 11 10 15 15 N 1.31517 * 119.99734 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46770 * 90.00391 * 16 14 12 18 18 H 1.48498 * 109.47483 * 209.99811 * 16 14 12 19 19 H 1.48497 * 109.47580 * 330.00688 * 16 14 12 20 20 C 1.53126 * 109.15071 * 302.33888 * 11 10 9 21 21 C 1.46854 * 110.99958 * 45.78597 * 8 7 6 22 22 O 1.34295 * 108.42148 * 359.62771 * 6 5 4 23 23 H 1.09006 * 109.47178 * 299.99819 * 1 2 3 24 24 H 1.08999 * 109.47329 * 59.99928 * 1 2 3 25 25 H 1.08998 * 109.47085 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47178 * 240.00181 * 2 1 3 27 27 H 1.08999 * 109.47329 * 120.00072 * 2 1 3 28 28 H 1.07999 * 126.57981 * 0.02562 * 4 3 2 29 29 H 1.07994 * 126.57724 * 180.23534 * 5 4 3 30 30 H 1.08992 * 109.47568 * 329.71523 * 7 6 5 31 31 H 1.09001 * 109.46476 * 209.71507 * 7 6 5 32 32 H 1.09002 * 109.46481 * 294.17890 * 9 8 7 33 33 H 1.08994 * 109.46283 * 54.15743 * 9 8 7 34 34 H 1.09007 * 109.50453 * 179.12106 * 10 9 8 35 35 H 1.09009 * 109.50412 * 299.23146 * 10 9 8 36 36 H 1.09001 * 109.52470 * 62.23762 * 11 10 9 37 37 H 0.96999 * 120.00041 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.50076 * 297.71308 * 20 11 10 39 39 H 1.08998 * 109.53581 * 177.61293 * 20 11 10 40 40 H 1.08993 * 109.46229 * 305.85774 * 21 8 7 41 41 H 1.09008 * 109.45803 * 65.83386 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2946 2.1624 1.0911 5 6 2.7459 3.4212 0.6320 6 6 2.7245 3.3762 -0.7122 7 6 3.1219 4.4972 -1.6378 8 7 4.5564 4.3988 -1.9383 9 6 4.9330 5.3227 -3.0158 10 6 6.4518 5.2992 -3.2019 11 6 6.8972 3.8755 -3.5465 12 6 8.3982 3.8327 -3.6732 13 1 8.9768 3.1923 -3.0240 14 6 9.0328 4.6109 -4.6180 15 7 8.3281 5.3911 -5.4083 16 14 10.8934 4.5584 -4.7746 17 1 11.2787 3.5034 -5.7461 18 1 11.3874 5.8749 -5.2519 19 1 11.4933 4.2549 -3.4505 20 6 6.4504 2.9257 -2.4316 21 6 4.9316 3.0178 -2.2677 22 8 2.2945 2.1612 -1.0894 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1859 1.8539 2.1204 29 1 3.0475 4.2588 1.2433 30 1 2.9158 5.4543 -1.1589 31 1 2.5509 4.4236 -2.5634 32 1 4.4486 5.0162 -3.9429 33 1 4.6145 6.3323 -2.7563 34 1 6.7297 5.9733 -4.0122 35 1 6.9365 5.6190 -2.2794 36 1 6.4431 3.5698 -4.4891 37 1 8.7746 5.9389 -6.0727 38 1 6.9351 3.2081 -1.4971 39 1 6.7272 1.9038 -2.6907 40 1 4.6120 2.3533 -1.4650 41 1 4.4474 2.7221 -3.1985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584223796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:01 Heat of formation + Delta-G solvation = -0.025967 kcal Electronic energy + Delta-G solvation = -20037.225893 eV Core-core repulsion = 17110.977139 eV Total energy + Delta-G solvation = -2926.248754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.53155 -38.18936 -34.55602 -33.94057 -32.70719 -31.47663 -29.94405 -28.86722 -26.36116 -24.58040 -22.98393 -22.19188 -21.61325 -21.07546 -19.88636 -18.54356 -16.67519 -16.44490 -16.00377 -15.03766 -14.68736 -14.62260 -14.39426 -14.22548 -13.35556 -13.14520 -12.87639 -12.70594 -12.64685 -12.52536 -12.33396 -11.93080 -11.68962 -11.59390 -11.32589 -11.17877 -10.94137 -10.72705 -10.43180 -10.18596 -9.98254 -9.74463 -9.41696 -8.92681 -8.69107 -8.28903 -8.23524 -7.73954 -5.94760 -3.99717 1.79836 2.71882 2.97031 3.33290 3.39902 3.43868 4.46921 4.50886 4.59170 4.80294 5.01455 5.02540 5.16298 5.30217 5.35415 5.45771 5.57998 5.61396 5.66317 5.77963 5.89682 5.91489 5.94594 6.09139 6.15810 6.22213 6.23189 6.38113 6.58886 6.64770 6.67244 6.89648 7.09326 7.17142 7.31648 7.42916 7.61359 7.65335 7.84176 8.07727 8.17622 8.51481 9.03845 9.64484 11.11591 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037299 B = 0.004022 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.506098 B = 6959.569082 C = 7281.665303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C -0.018 4.018 4 C -0.210 4.210 5 C -0.195 4.195 6 C 0.001 3.999 7 C 0.131 3.869 8 N -0.530 5.530 9 C 0.057 3.943 10 C -0.104 4.104 11 C 0.047 3.953 12 C -0.509 4.509 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.105 4.105 21 C 0.061 3.939 22 O -0.175 6.175 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.020 0.980 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.768 -5.773 10.129 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.069 4.069 4 C -0.229 4.229 5 C -0.215 4.215 6 C -0.049 4.049 7 C 0.003 3.997 8 N -0.256 5.256 9 C -0.070 4.070 10 C -0.142 4.142 11 C 0.029 3.971 12 C -0.547 4.547 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.143 4.143 21 C -0.067 4.067 22 O -0.071 6.071 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.161 0.839 29 H 0.165 0.835 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.513 -5.592 10.087 18.538 hybrid contribution 0.608 -0.115 -0.619 0.875 sum -13.905 -5.708 9.468 17.764 Atomic orbital electron populations 1.21784 0.94184 1.02085 1.02564 1.20049 0.96142 0.87799 1.04000 1.22351 1.05061 0.95072 0.84369 1.21511 1.07543 0.94773 0.99069 1.21502 1.06846 0.99363 0.93814 1.22284 1.02519 0.85365 0.94742 1.20650 0.90326 0.92888 0.95815 1.62279 1.12206 1.07747 1.43338 1.22323 1.00257 0.94240 0.90194 1.21665 0.89097 1.01903 1.01507 1.18688 0.95439 0.90613 0.92382 1.21212 0.91819 1.24190 1.17506 0.92756 1.24969 0.97999 0.95433 0.95652 1.69874 1.34964 1.27055 1.21326 0.86626 0.86060 0.77219 0.78275 1.20826 1.21301 1.19949 1.21675 0.91777 0.99833 1.01000 1.22162 0.98374 0.88195 0.97939 1.83995 1.65491 1.22571 1.35077 0.92269 0.92342 0.91801 0.90139 0.89055 0.83883 0.83535 0.88166 0.93776 0.95655 0.92322 0.88762 0.93682 0.96145 0.93123 0.92512 0.93261 0.92318 0.95806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.15 0.37 -0.80 16 2 C -0.04 -0.40 6.47 -27.89 -0.18 -0.58 16 3 C -0.02 -0.24 6.58 -35.63 -0.23 -0.47 16 4 C -0.21 -2.67 10.81 -39.70 -0.43 -3.10 16 5 C -0.20 -2.75 10.81 -39.70 -0.43 -3.17 16 6 C 0.00 0.01 5.00 -35.62 -0.18 -0.16 16 7 C 0.13 2.00 5.81 -4.98 -0.03 1.97 16 8 N -0.53 -9.82 4.80 -236.11 -1.13 -10.96 16 9 C 0.06 1.12 5.43 -3.84 -0.02 1.10 16 10 C -0.10 -2.46 5.12 -26.66 -0.14 -2.60 16 11 C 0.05 1.20 2.16 -91.66 -0.20 1.01 16 12 C -0.51 -14.21 8.56 -34.44 -0.29 -14.51 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 15 N -0.89 -25.59 11.37 55.43 0.63 -24.96 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.10 -2.33 5.32 -26.65 -0.14 -2.47 16 21 C 0.06 1.19 4.98 -3.83 -0.02 1.18 16 22 O -0.17 -2.71 9.87 5.73 0.06 -2.66 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 34 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 35 H 0.04 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.12 6.02 -51.93 -0.31 0.81 16 41 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -29.58 327.42 -9.49 -39.07 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.94 Total: -0.89 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -2.02 Total: -21.03 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.50 Total: -35.91 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: 0.06 Total: -2.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.58 -9.49 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584223796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.044 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds