Wall clock time and date at job start Mon Mar 30 2020 00:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47162 * 2 1 4 4 C 1.34512 * 125.78946 * 90.00302 * 3 2 1 5 5 C 1.41385 * 106.83968 * 179.74928 * 4 3 2 6 6 C 1.34515 * 106.83909 * 0.37109 * 5 4 3 7 7 C 1.50704 * 125.78390 * 179.88761 * 6 5 4 8 8 N 1.46898 * 109.46923 * 89.71763 * 7 6 5 9 9 C 1.46847 * 110.99897 * 169.99458 * 8 7 6 10 10 C 1.53034 * 109.51345 * 174.16738 * 9 8 7 11 11 C 1.53099 * 109.29509 * 59.18740 * 10 9 8 12 12 C 1.50694 * 109.57939 * 182.40274 * 11 10 9 13 13 H 1.08004 * 119.99655 * 119.71001 * 12 11 10 14 14 C 1.37875 * 120.00437 * 299.70654 * 12 11 10 15 15 N 1.31517 * 119.99734 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46770 * 90.00391 * 16 14 12 18 18 H 1.48498 * 109.47483 * 209.99811 * 16 14 12 19 19 H 1.48497 * 109.47580 * 330.00688 * 16 14 12 20 20 C 1.53126 * 109.15071 * 302.33888 * 11 10 9 21 21 C 1.46854 * 110.99958 * 45.78597 * 8 7 6 22 22 O 1.34295 * 108.42148 * 359.62771 * 6 5 4 23 23 H 1.09006 * 109.47178 * 299.99819 * 1 2 3 24 24 H 1.08999 * 109.47329 * 59.99928 * 1 2 3 25 25 H 1.08998 * 109.47085 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47178 * 240.00181 * 2 1 3 27 27 H 1.08999 * 109.47329 * 120.00072 * 2 1 3 28 28 H 1.07999 * 126.57981 * 0.02562 * 4 3 2 29 29 H 1.07994 * 126.57724 * 180.23534 * 5 4 3 30 30 H 1.08992 * 109.47568 * 329.71523 * 7 6 5 31 31 H 1.09001 * 109.46476 * 209.71507 * 7 6 5 32 32 H 1.09002 * 109.46481 * 294.17890 * 9 8 7 33 33 H 1.08994 * 109.46283 * 54.15743 * 9 8 7 34 34 H 1.09007 * 109.50453 * 179.12106 * 10 9 8 35 35 H 1.09009 * 109.50412 * 299.23146 * 10 9 8 36 36 H 1.09001 * 109.52470 * 62.23762 * 11 10 9 37 37 H 0.96999 * 120.00041 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.50076 * 297.71308 * 20 11 10 39 39 H 1.08998 * 109.53581 * 177.61293 * 20 11 10 40 40 H 1.08993 * 109.46229 * 305.85774 * 21 8 7 41 41 H 1.09008 * 109.45803 * 65.83386 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2946 2.1624 1.0911 5 6 2.7459 3.4212 0.6320 6 6 2.7245 3.3762 -0.7122 7 6 3.1219 4.4972 -1.6378 8 7 4.5564 4.3988 -1.9383 9 6 4.9330 5.3227 -3.0158 10 6 6.4518 5.2992 -3.2019 11 6 6.8972 3.8755 -3.5465 12 6 8.3982 3.8327 -3.6732 13 1 8.9768 3.1923 -3.0240 14 6 9.0328 4.6109 -4.6180 15 7 8.3281 5.3911 -5.4083 16 14 10.8934 4.5584 -4.7746 17 1 11.2787 3.5034 -5.7461 18 1 11.3874 5.8749 -5.2519 19 1 11.4933 4.2549 -3.4505 20 6 6.4504 2.9257 -2.4316 21 6 4.9316 3.0178 -2.2677 22 8 2.2945 2.1612 -1.0894 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1859 1.8539 2.1204 29 1 3.0475 4.2588 1.2433 30 1 2.9158 5.4543 -1.1589 31 1 2.5509 4.4236 -2.5634 32 1 4.4486 5.0162 -3.9429 33 1 4.6145 6.3323 -2.7563 34 1 6.7297 5.9733 -4.0122 35 1 6.9365 5.6190 -2.2794 36 1 6.4431 3.5698 -4.4891 37 1 8.7746 5.9389 -6.0727 38 1 6.9351 3.2081 -1.4971 39 1 6.7272 1.9038 -2.6907 40 1 4.6120 2.3533 -1.4650 41 1 4.4474 2.7221 -3.1985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584223796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:01 Heat of formation + Delta-G solvation = -16.362516 kcal Electronic energy + Delta-G solvation = -20037.934299 eV Core-core repulsion = 17110.977139 eV Total energy + Delta-G solvation = -2926.957160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.58061 -39.81664 -36.06981 -35.02179 -33.98202 -33.15534 -31.60609 -30.22457 -27.89103 -26.06502 -24.21133 -23.64841 -23.08478 -22.35494 -20.93304 -20.37166 -18.49385 -17.70950 -17.30912 -16.66889 -16.15027 -15.89975 -15.69944 -15.23029 -14.93836 -14.65047 -14.34777 -14.13492 -13.90771 -13.70019 -13.43526 -13.28159 -13.06846 -12.94800 -12.85628 -12.53642 -12.38358 -12.24031 -12.05320 -11.92534 -11.87378 -11.38934 -10.85932 -10.77073 -10.68613 -10.39003 -9.43284 -9.10054 -8.08324 -6.21643 0.74656 1.41336 1.42102 1.52696 1.70055 1.98126 2.44079 3.07293 3.18652 3.61875 3.92742 4.11685 4.16128 4.18142 4.24963 4.30169 4.37966 4.46059 4.48096 4.59623 4.64959 4.68436 4.85960 4.88987 4.90606 4.95881 5.01924 5.04586 5.18301 5.20764 5.21822 5.29560 5.35337 5.52583 5.61351 5.68456 5.95624 5.97487 6.16839 6.23686 6.29723 6.39976 6.88676 7.45930 8.96540 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037299 B = 0.004022 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.506098 B = 6959.569082 C = 7281.665303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.022 4.022 4 C -0.218 4.218 5 C -0.194 4.194 6 C -0.028 4.028 7 C 0.134 3.866 8 N -0.534 5.534 9 C 0.067 3.933 10 C -0.095 4.095 11 C 0.044 3.956 12 C -0.535 4.535 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.917 5.917 16 Si 0.954 3.046 17 H -0.277 1.277 18 H -0.281 1.281 19 H -0.269 1.269 20 C -0.097 4.097 21 C 0.075 3.925 22 O -0.196 6.196 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.169 0.831 29 H 0.160 0.840 30 H 0.125 0.875 31 H 0.046 0.954 32 H 0.018 0.982 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.034 0.966 36 H -0.013 1.013 37 H 0.261 0.739 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -6.291 11.699 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.072 4.072 4 C -0.237 4.237 5 C -0.214 4.214 6 C -0.078 4.078 7 C 0.007 3.993 8 N -0.260 5.260 9 C -0.060 4.060 10 C -0.133 4.133 11 C 0.026 3.974 12 C -0.573 4.573 13 H 0.068 0.932 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.780 3.220 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.135 4.135 21 C -0.053 4.053 22 O -0.094 6.094 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.132 0.868 28 H 0.186 0.814 29 H 0.177 0.823 30 H 0.143 0.857 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.006 0.994 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -15.197 -6.113 11.666 20.110 hybrid contribution 0.773 -0.002 -1.078 1.326 sum -14.424 -6.115 10.588 18.909 Atomic orbital electron populations 1.21760 0.93031 1.03326 1.02070 1.20268 0.97066 0.85788 1.05033 1.23133 1.04001 0.96211 0.83898 1.21851 1.07332 0.94221 1.00288 1.21811 1.05738 1.00266 0.93553 1.22288 1.04597 0.85675 0.95200 1.20704 0.87810 0.94436 0.96354 1.62210 1.14980 1.06566 1.42252 1.22116 0.97099 0.96155 0.90637 1.21422 0.92189 0.99993 0.99700 1.18655 0.94308 0.92448 0.92002 1.21552 0.93286 1.24505 1.17917 0.93241 1.25735 1.02533 0.95000 0.95276 1.70006 1.36650 1.27374 1.21594 0.85612 0.80586 0.77408 0.78383 1.20257 1.20684 1.19406 1.21536 0.93789 0.98912 0.99285 1.21946 0.96130 0.89399 0.97846 1.83979 1.66003 1.22990 1.36440 0.91895 0.93689 0.89711 0.90271 0.86827 0.81389 0.82284 0.85695 0.93579 0.96363 0.89545 0.91527 0.94724 0.99439 0.92999 0.93043 0.93262 0.91340 0.96713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 71.98 0.71 -1.23 16 2 C -0.04 -0.73 6.47 29.85 0.19 -0.53 16 3 C -0.02 -0.54 6.58 24.83 0.16 -0.38 16 4 C -0.22 -5.04 10.81 22.19 0.24 -4.80 16 5 C -0.19 -5.05 10.81 22.19 0.24 -4.81 16 6 C -0.03 -0.82 5.00 24.83 0.12 -0.70 16 7 C 0.13 3.88 5.81 85.56 0.50 4.37 16 8 N -0.53 -19.32 4.80 -900.93 -4.32 -23.64 16 9 C 0.07 2.62 5.43 86.32 0.47 3.09 16 10 C -0.09 -4.60 5.12 30.64 0.16 -4.45 16 11 C 0.04 2.33 2.16 -11.47 -0.02 2.30 16 12 C -0.53 -30.51 8.56 25.60 0.22 -30.29 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 14 C 0.01 0.74 5.31 84.65 0.45 1.19 16 15 N -0.92 -53.56 11.37 21.45 0.24 -53.32 16 16 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 C -0.10 -4.37 5.32 30.65 0.16 -4.21 16 21 C 0.07 2.92 4.98 86.32 0.43 3.35 16 22 O -0.20 -5.91 9.87 -2.42 -0.02 -5.93 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.05 1.32 8.08 -2.39 -0.02 1.31 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 2.89 8.12 -2.39 -0.02 2.88 16 34 H 0.07 3.60 6.17 -2.38 -0.01 3.59 16 35 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.07 2.56 6.02 -2.39 -0.01 2.55 16 41 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -64.17 327.42 2.93 -61.23 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.98 Total: 12.32 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 4.03 Total: -37.10 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -4.08 Total: -76.96 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.02 Total: -5.93 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -64.17 2.93 -61.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584223796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.872 kcal (2) G-P(sol) polarization free energy of solvation -64.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds