Wall clock time and date at job start Sun Mar 29 2020 23:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 119.99854 * 2 1 4 4 H 1.48500 * 109.47137 * 270.00140 * 3 2 1 5 5 H 1.48501 * 109.47188 * 30.00365 * 3 2 1 6 6 H 1.48494 * 109.47160 * 150.00211 * 3 2 1 7 7 C 1.38949 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00429 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99477 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99642 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00179 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00118 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47348 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46991 * 65.00452 * 13 12 10 15 15 C 1.52997 * 109.47592 * 59.99657 * 14 13 12 16 16 C 1.52996 * 109.47165 * 60.00300 * 15 14 13 17 17 C 1.52997 * 109.47131 * 59.99833 * 16 15 14 18 18 C 1.52997 * 109.47232 * 300.00126 * 17 16 15 19 19 C 1.52996 * 109.47165 * 59.99895 * 18 17 16 20 20 C 1.53002 * 109.47415 * 299.99873 * 18 17 16 21 21 C 1.52997 * 109.46817 * 59.99873 * 20 18 17 22 22 C 1.52997 * 109.47232 * 300.00239 * 21 20 18 23 23 H 0.97001 * 119.99808 * 359.97438 * 1 2 3 24 24 H 0.96994 * 120.00148 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.46894 * 59.99894 * 12 10 9 26 26 H 1.09001 * 109.46755 * 300.00519 * 12 10 9 27 27 H 1.08993 * 109.47194 * 304.99609 * 13 12 10 28 28 H 1.09002 * 109.46719 * 299.99711 * 14 13 12 29 29 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 30 30 H 1.09000 * 109.47140 * 300.00346 * 15 14 13 31 31 H 1.08992 * 109.47534 * 180.02562 * 16 15 14 32 32 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.47533 * 60.00505 * 17 16 15 34 34 H 1.09000 * 109.47140 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.46993 * 60.00298 * 19 18 17 36 36 H 1.09000 * 109.47380 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.47070 * 300.00053 * 20 18 17 38 38 H 1.08996 * 109.47407 * 179.97438 * 20 18 17 39 39 H 1.09001 * 109.47289 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47140 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47230 * 299.99295 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5577 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 6 2.2382 -6.0258 -0.0040 14 6 3.0339 -6.0184 1.3028 15 6 2.0745 -6.1695 2.4850 16 6 1.3136 -7.4908 2.3588 17 6 2.3079 -8.6537 2.3570 18 6 3.2672 -8.5026 1.1747 19 6 4.0281 -7.1813 1.3010 20 6 2.4715 -8.5101 -0.1320 21 6 1.4773 -7.3472 -0.1302 22 6 0.5179 -7.4983 1.0520 23 1 -0.4850 0.8401 0.0004 24 1 0.3535 -2.3906 -0.0005 25 1 0.6169 -4.9200 -0.8920 26 1 0.6175 -4.9212 0.8880 27 1 2.9216 -5.9182 -0.8462 28 1 3.5759 -5.0771 1.3928 29 1 2.6414 -6.1638 3.4160 30 1 1.3662 -5.3410 2.4863 31 1 0.6299 -7.5983 3.2007 32 1 1.7659 -9.5951 2.2666 33 1 2.8748 -8.6485 3.2879 34 1 3.9759 -9.3309 1.1737 35 1 4.5951 -7.1761 2.2319 36 1 4.7119 -7.0739 0.4590 37 1 1.9294 -9.4514 -0.2220 38 1 3.1549 -8.4020 -0.9742 39 1 0.9100 -7.3527 -1.0610 40 1 -0.1907 -6.6700 1.0530 41 1 -0.0243 -8.4396 0.9620 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593443571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:34 Heat of formation + Delta-G solvation = -79.033742 kcal Electronic energy + Delta-G solvation = -21083.282224 eV Core-core repulsion = 18153.607436 eV Total energy + Delta-G solvation = -2929.674788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35455 -37.99791 -34.12610 -33.22267 -32.42282 -32.26149 -31.16527 -28.40845 -25.64952 -25.23822 -23.73044 -21.24671 -21.16248 -20.68682 -18.94115 -17.78613 -16.94504 -15.81680 -14.93004 -14.89047 -14.48396 -14.20753 -14.14197 -13.68656 -13.53155 -13.08089 -13.02722 -12.94472 -12.43117 -12.18724 -11.91730 -11.77156 -11.49471 -11.28952 -11.01154 -10.70247 -10.66312 -10.60046 -10.50512 -10.36750 -10.27934 -10.15647 -9.54672 -9.35835 -9.30996 -9.21472 -8.20151 -7.90429 -6.37799 -3.78272 3.19858 3.28100 3.34077 3.98828 4.20777 4.66589 4.70212 4.73251 5.09354 5.27662 5.30698 5.32968 5.41853 5.46816 5.49444 5.56203 5.56433 5.59737 5.68336 5.84605 5.87775 5.94860 5.98229 6.07648 6.13554 6.18308 6.18688 6.25935 6.27542 6.36385 6.39431 6.42688 6.52358 6.54043 6.75611 6.81222 6.94656 7.09002 7.58745 8.11201 8.66608 9.22435 9.61090 10.12961 10.80087 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039370 B = 0.004856 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.036845 B = 5765.093530 C = 5908.711167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.443 3.557 11 O -0.593 6.593 12 C -0.131 4.131 13 C -0.050 4.050 14 C -0.085 4.085 15 C -0.110 4.110 16 C -0.085 4.085 17 C -0.105 4.105 18 C -0.086 4.086 19 C -0.105 4.105 20 C -0.105 4.105 21 C -0.084 4.084 22 C -0.109 4.109 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 -16.114 2.842 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.478 6.478 12 C -0.172 4.172 13 C -0.069 4.069 14 C -0.103 4.103 15 C -0.148 4.148 16 C -0.103 4.103 17 C -0.142 4.142 18 C -0.104 4.104 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.102 4.102 22 C -0.146 4.146 23 H 0.080 0.920 24 H 0.225 0.775 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.005 -15.938 2.848 16.221 hybrid contribution -0.316 0.917 -0.030 0.970 sum 0.689 -15.021 2.818 15.299 Atomic orbital electron populations 1.69614 1.05924 1.28039 1.50864 1.25245 0.95600 0.99662 0.97471 0.85887 0.79241 0.80985 0.78347 1.20461 1.20968 1.19469 1.19709 0.93335 0.82434 1.47386 0.88016 1.41944 1.09180 1.04764 1.64277 1.20008 0.88329 0.85015 0.83686 1.90462 1.14028 1.87333 1.56022 1.21677 0.98894 0.94026 1.02559 1.20724 0.95968 0.91657 0.98534 1.21179 0.95820 0.99617 0.93716 1.21592 0.98473 0.96541 0.98158 1.21035 0.96570 0.95451 0.97294 1.21509 0.97153 0.97666 0.97901 1.21051 0.96709 0.97712 0.94970 1.21515 0.97462 0.94129 1.01142 1.21502 0.97809 0.97710 0.97215 1.21120 0.96105 0.95074 0.97901 1.21564 0.97381 1.01165 0.94487 0.91952 0.77509 0.90916 0.90163 0.90899 0.88387 0.92665 0.91758 0.91937 0.92626 0.92433 0.92052 0.92639 0.92225 0.92562 0.92185 0.91615 0.91668 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.57 -14.52 5.29 -10.96 -0.06 -14.57 16 10 C 0.44 10.42 7.50 -10.99 -0.08 10.34 16 11 O -0.59 -15.68 13.54 5.54 0.08 -15.60 16 12 C -0.13 -2.33 4.47 -27.88 -0.12 -2.46 16 13 C -0.05 -0.80 1.58 -90.62 -0.14 -0.95 16 14 C -0.09 -1.38 2.46 -90.62 -0.22 -1.60 16 15 C -0.11 -1.60 4.92 -26.73 -0.13 -1.73 16 16 C -0.09 -1.04 3.20 -90.62 -0.29 -1.33 16 17 C -0.10 -1.17 5.19 -26.73 -0.14 -1.31 16 18 C -0.09 -1.01 3.19 -90.62 -0.29 -1.30 16 19 C -0.10 -1.45 5.19 -26.73 -0.14 -1.59 16 20 C -0.10 -1.23 5.19 -26.73 -0.14 -1.37 16 21 C -0.08 -1.08 2.72 -90.62 -0.25 -1.33 16 22 C -0.11 -1.31 4.92 -26.73 -0.13 -1.44 16 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.08 1.33 4.83 -51.93 -0.25 1.08 16 27 H 0.07 1.31 7.95 -51.93 -0.41 0.90 16 28 H 0.10 1.97 5.95 -51.93 -0.31 1.66 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.01 6.32 -51.93 -0.33 0.69 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 301.14 15.07 4.54 4.54 Total: -1.00 -29.50 301.14 -8.61 -38.11 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.55 Total: 9.58 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.32 Total: -14.14 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.67 Total: -38.73 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.08 Total: -15.60 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.50 -8.61 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593443571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.925 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds