Wall clock time and date at job start Mon Mar 30 2020 00:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99912 * 2 1 4 4 H 1.48500 * 109.47226 * 270.00168 * 3 2 1 5 5 H 1.48500 * 109.47121 * 30.00181 * 3 2 1 6 6 H 1.48502 * 109.47221 * 150.00014 * 3 2 1 7 7 C 1.37874 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00106 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47167 * 184.87168 * 9 7 2 11 11 C 1.46893 * 111.00179 * 75.74542 * 10 9 7 12 12 C 1.53002 * 109.47496 * 190.00118 * 11 10 9 13 13 C 1.52992 * 109.47245 * 180.02562 * 12 11 10 14 14 C 1.53786 * 113.61523 * 274.13410 * 13 12 11 15 15 C 1.53957 * 87.02045 * 220.05157 * 14 13 12 16 16 C 1.53779 * 87.11056 * 25.36188 * 15 14 13 17 17 C 1.46903 * 110.99890 * 199.70165 * 10 9 7 18 18 C 1.50702 * 109.46949 * 75.68155 * 17 10 9 19 19 C 1.34512 * 125.78756 * 89.71662 * 18 17 10 20 20 C 1.41385 * 106.84121 * 179.88448 * 19 18 17 21 21 C 1.34514 * 106.84013 * 0.37598 * 20 19 18 22 22 O 1.34301 * 125.78839 * 270.02140 * 18 17 10 23 23 H 0.97002 * 119.99936 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46902 * 64.86691 * 9 7 2 25 25 H 1.09000 * 109.46850 * 304.86995 * 9 7 2 26 26 H 1.09005 * 109.46897 * 310.00134 * 11 10 9 27 27 H 1.09000 * 109.47032 * 69.99894 * 11 10 9 28 28 H 1.08995 * 109.46782 * 300.00388 * 12 11 10 29 29 H 1.08998 * 109.46647 * 59.99877 * 12 11 10 30 30 H 1.08998 * 112.85321 * 45.33600 * 13 12 11 31 31 H 1.09004 * 113.61205 * 334.57054 * 14 13 12 32 32 H 1.09003 * 113.61295 * 105.47268 * 14 13 12 33 33 H 1.08999 * 113.53566 * 270.81650 * 15 14 13 34 34 H 1.08996 * 113.66858 * 139.93056 * 15 14 13 35 35 H 1.09003 * 113.61772 * 220.08984 * 16 15 14 36 36 H 1.09007 * 113.69141 * 89.20229 * 16 15 14 37 37 H 1.08993 * 109.46790 * 195.68631 * 17 10 9 38 38 H 1.08998 * 109.46733 * 315.68618 * 17 10 9 39 39 H 1.08004 * 126.57764 * 0.02772 * 19 18 17 40 40 H 1.08001 * 126.57884 * 180.16906 * 20 19 18 41 41 H 1.07996 * 125.79047 * 179.75458 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2013 -3.6133 0.1155 11 6 2.6999 -3.7374 1.4917 12 6 3.8610 -4.7331 1.5257 13 6 4.3798 -4.8629 2.9591 14 6 5.4253 -3.7993 3.3345 15 6 6.1786 -4.9177 4.0773 16 6 5.4973 -5.9074 3.1176 17 6 1.5960 -4.8717 -0.3406 18 6 1.5380 -4.8843 -1.8465 19 6 2.4977 -5.3488 -2.6667 20 6 2.0287 -5.1698 -3.9885 21 6 0.8141 -4.5991 -3.8971 22 8 0.5220 -4.4286 -2.5972 23 1 -0.4850 0.8401 0.0004 24 1 0.6918 -2.5949 -0.9323 25 1 0.5603 -2.5206 0.8412 26 1 3.0450 -2.7647 1.8422 27 1 1.8974 -4.0928 2.1382 28 1 3.5159 -5.7058 1.1751 29 1 4.6634 -4.3777 0.8792 30 1 3.5791 -4.9656 3.6914 31 1 5.9693 -3.4005 2.4782 32 1 5.0391 -3.0204 3.9920 33 1 5.8703 -5.0346 5.1162 34 1 7.2611 -4.8696 3.9588 35 1 5.1691 -6.8280 3.6002 36 1 6.0601 -6.0872 2.2016 37 1 2.1978 -5.7113 0.0070 38 1 0.5868 -4.9564 0.0625 39 1 3.4438 -5.7782 -2.3720 40 1 2.5477 -5.4368 -4.8972 41 1 0.1812 -4.3244 -4.7279 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595334025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:32 Heat of formation + Delta-G solvation = 28.762932 kcal Electronic energy + Delta-G solvation = -19944.029153 eV Core-core repulsion = 17019.028780 eV Total energy + Delta-G solvation = -2925.000374 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.99091 -38.87444 -36.73375 -32.71780 -32.41576 -31.16010 -29.63721 -26.90102 -25.60105 -25.11173 -23.71985 -21.59751 -21.17398 -20.51750 -19.54525 -19.19685 -16.89401 -16.34877 -15.63181 -15.46285 -15.04309 -14.58068 -14.43850 -13.91692 -13.85538 -13.24704 -12.63606 -12.33033 -12.31867 -12.28309 -12.14347 -11.90660 -11.73053 -11.36945 -11.24202 -10.99372 -10.70928 -10.58788 -10.42692 -10.39334 -10.01622 -9.81308 -9.60879 -9.41636 -9.19478 -8.37974 -7.95039 -7.29790 -5.97658 -3.98654 2.27200 3.11022 3.34493 3.40195 3.43989 3.56354 4.45875 4.68795 4.77059 4.83793 4.96903 5.10290 5.26458 5.37145 5.44689 5.49526 5.60920 5.67195 5.71793 5.84730 5.86921 5.88245 5.91273 5.97647 6.02973 6.12881 6.26234 6.26486 6.39567 6.44427 6.53571 6.61165 6.74651 6.79809 7.00043 7.27840 7.35696 7.70491 7.85303 8.13524 8.18840 8.54651 9.09247 9.64932 11.12889 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.010159 B = 0.007586 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.563044 B = 3690.144811 C = 5923.088641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.190 3.810 10 N -0.532 5.532 11 C 0.067 3.933 12 C -0.107 4.107 13 C -0.108 4.108 14 C -0.136 4.136 15 C -0.145 4.145 16 C -0.137 4.137 17 C 0.125 3.875 18 C 0.024 3.976 19 C -0.211 4.211 20 C -0.219 4.219 21 C -0.050 4.050 22 O -0.170 6.170 23 H 0.260 0.740 24 H 0.031 0.969 25 H -0.003 1.003 26 H 0.086 0.914 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 -12.281 1.504 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.065 3.935 10 N -0.257 5.257 11 C -0.061 4.061 12 C -0.145 4.145 13 C -0.127 4.127 14 C -0.173 4.173 15 C -0.182 4.182 16 C -0.175 4.175 17 C -0.003 4.003 18 C -0.027 4.027 19 C -0.231 4.231 20 C -0.238 4.238 21 C -0.118 4.118 22 O -0.065 6.065 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.015 0.985 26 H 0.104 0.896 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 6.978 -11.912 1.334 13.870 hybrid contribution -0.161 0.830 0.185 0.865 sum 6.817 -11.082 1.519 13.100 Atomic orbital electron populations 1.69970 1.06023 1.26627 1.51288 1.24983 0.94835 0.99206 0.95623 0.86534 0.79744 0.83255 0.78100 1.20714 1.21361 1.19829 1.21137 0.93525 0.89755 1.49578 0.91882 1.19824 0.89784 0.87351 0.96534 1.62128 1.39584 1.02544 1.21424 1.21970 0.95026 1.00136 0.88926 1.21657 0.98950 0.98919 0.94964 1.22512 0.96114 0.96349 0.97712 1.22997 0.97562 0.96438 1.00349 1.22847 0.99341 0.97472 0.98546 1.22932 0.97982 0.96971 0.99590 1.20550 0.98880 0.95433 0.85483 1.22423 0.87210 0.98991 0.94060 1.21382 1.00646 1.08875 0.92206 1.21701 0.96962 1.06956 0.98163 1.23874 0.98885 1.04809 0.84237 1.84089 1.41363 1.64003 1.17005 0.93022 0.95050 0.98512 0.89584 0.96230 0.92620 0.91186 0.89647 0.89924 0.91607 0.90645 0.91931 0.92067 0.90255 0.88897 0.94079 0.84103 0.84181 0.78869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -14.33 8.56 -34.44 -0.29 -14.63 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.19 5.04 4.57 -4.97 -0.02 5.02 16 10 N -0.53 -11.42 4.34 -237.52 -1.03 -12.46 16 11 C 0.07 1.25 4.78 -3.83 -0.02 1.23 16 12 C -0.11 -1.57 5.01 -26.73 -0.13 -1.70 16 13 C -0.11 -1.36 3.64 -89.81 -0.33 -1.68 16 14 C -0.14 -1.69 7.65 -25.82 -0.20 -1.89 16 15 C -0.14 -1.51 8.09 -25.83 -0.21 -1.72 16 16 C -0.14 -1.47 7.64 -25.92 -0.20 -1.67 16 17 C 0.12 2.30 5.37 -4.97 -0.03 2.27 16 18 C 0.02 0.47 6.25 -35.62 -0.22 0.24 16 19 C -0.21 -3.62 10.81 -39.70 -0.43 -4.05 16 20 C -0.22 -3.43 10.91 -39.70 -0.43 -3.87 16 21 C -0.05 -0.82 12.09 29.42 0.36 -0.46 16 22 O -0.17 -3.42 9.94 5.69 0.06 -3.36 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.03 0.91 6.72 -51.93 -0.35 0.56 16 25 H 0.00 -0.08 8.00 -51.93 -0.42 -0.50 16 26 H 0.09 1.79 7.44 -51.93 -0.39 1.40 16 27 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 28 H 0.06 0.76 6.25 -51.93 -0.32 0.43 16 29 H 0.07 1.09 7.88 -51.93 -0.41 0.68 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.09 1.42 5.88 -51.93 -0.31 1.12 16 38 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 39 H 0.14 2.12 8.06 -52.48 -0.42 1.70 16 40 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -31.37 334.53 -9.26 -40.62 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.79 Total: 1.02 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -2.25 Total: -21.42 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.30 Total: -38.94 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: 0.06 Total: -3.36 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.37 -9.26 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595334025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.388 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds