Wall clock time and date at job start Mon Mar 30 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.46923 * 2 1 4 4 C 1.34519 * 125.79240 * 90.00134 * 3 2 1 5 5 C 1.41380 * 106.84187 * 179.97438 * 4 3 2 6 6 C 1.34509 * 106.84102 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.78727 * 179.97438 * 6 5 4 8 8 N 1.46893 * 109.47321 * 90.00079 * 7 6 5 9 9 C 1.46843 * 111.00274 * 66.04526 * 8 7 6 10 10 C 1.53036 * 109.52736 * 174.15982 * 9 8 7 11 11 C 1.53123 * 109.27570 * 59.18317 * 10 9 8 12 12 C 1.53126 * 109.15974 * 302.34236 * 11 10 9 13 13 H 1.08994 * 109.50238 * 297.71714 * 12 11 10 14 14 C 1.50694 * 109.50506 * 177.63500 * 12 11 10 15 15 H 1.08004 * 120.00139 * 275.20383 * 14 12 11 16 16 C 1.37878 * 119.99916 * 95.19764 * 14 12 11 17 17 N 1.31517 * 120.00147 * 185.51251 * 16 14 12 18 18 Si 1.86803 * 119.99902 * 5.52527 * 16 14 12 19 19 H 1.48495 * 109.47377 * 84.77423 * 18 16 14 20 20 H 1.48506 * 109.47015 * 204.77895 * 18 16 14 21 21 H 1.48496 * 109.47021 * 324.77434 * 18 16 14 22 22 C 1.46850 * 110.99837 * 301.83439 * 8 7 6 23 23 O 1.34301 * 108.42479 * 0.26422 * 6 5 4 24 24 H 1.09005 * 109.47180 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47249 * 299.99438 * 1 2 3 26 26 H 1.08996 * 109.47634 * 59.99779 * 1 2 3 27 27 H 1.09001 * 109.46751 * 240.00609 * 2 1 3 28 28 H 1.08996 * 109.47634 * 120.00221 * 2 1 3 29 29 H 1.08003 * 126.57113 * 359.97438 * 4 3 2 30 30 H 1.08007 * 126.57596 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.47156 * 210.00589 * 7 6 5 32 32 H 1.09004 * 109.47297 * 329.99641 * 7 6 5 33 33 H 1.09001 * 109.46405 * 294.18065 * 9 8 7 34 34 H 1.09006 * 109.45818 * 54.14500 * 9 8 7 35 35 H 1.09003 * 109.50233 * 179.11792 * 10 9 8 36 36 H 1.09002 * 109.50411 * 299.24245 * 10 9 8 37 37 H 1.08996 * 109.52476 * 62.24840 * 11 10 9 38 38 H 1.09003 * 109.52604 * 182.37990 * 11 10 9 39 39 H 0.97000 * 119.99956 * 180.02562 * 17 16 14 40 40 H 1.08992 * 109.46693 * 305.85218 * 22 8 7 41 41 H 1.09004 * 109.46124 * 65.82515 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7407 3.4231 0.6320 6 6 2.7240 3.3765 -0.7122 7 6 3.1202 4.4977 -1.6378 8 7 4.5547 4.4004 -1.9389 9 6 4.8488 3.1878 -2.7131 10 6 6.3207 3.1929 -3.1321 11 6 7.2021 3.2486 -1.8812 12 6 6.8423 4.4952 -1.0680 13 1 7.0483 5.3874 -1.6593 14 6 7.6648 4.5272 0.1943 15 1 7.3343 3.9851 1.0680 16 6 8.8392 5.2484 0.2338 17 7 9.6116 5.1896 1.2967 18 14 9.3332 6.3093 -1.2222 19 1 8.6756 7.6363 -1.1135 20 1 10.8077 6.4864 -1.2280 21 1 8.9091 5.6485 -2.4826 22 6 5.3552 4.4523 -0.7089 23 8 2.2881 2.1635 -1.0894 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.1851 1.8542 2.1204 30 1 3.0380 4.2624 1.2434 31 1 2.5489 4.4241 -2.5632 32 1 2.9136 5.4547 -1.1586 33 1 4.6485 2.3085 -2.1009 34 1 4.2183 3.1626 -3.6019 35 1 6.5425 2.2852 -3.6933 36 1 6.5185 4.0647 -3.7558 37 1 7.0330 2.3578 -1.2764 38 1 8.2505 3.2951 -2.1760 39 1 10.4377 5.6973 1.3246 40 1 5.0927 5.3455 -0.1421 41 1 5.1526 3.5671 -0.1060 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597178047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:15 Heat of formation + Delta-G solvation = -20.771186 kcal Electronic energy + Delta-G solvation = -20455.793743 eV Core-core repulsion = 17528.645409 eV Total energy + Delta-G solvation = -2927.148334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.60091 -39.92389 -35.88834 -35.01965 -34.31500 -33.40772 -31.98929 -30.04682 -27.25963 -26.85836 -24.50041 -23.23401 -23.14834 -22.31129 -21.04628 -20.42026 -19.01001 -17.68694 -17.30887 -16.72774 -16.09560 -15.96816 -15.49633 -15.27243 -15.03749 -14.75802 -14.52785 -14.36052 -13.97429 -13.79104 -13.68177 -13.33037 -13.21263 -12.97560 -12.82633 -12.72523 -12.42206 -12.19396 -11.92406 -11.81717 -11.78377 -11.34535 -11.10985 -10.87099 -10.79692 -10.63087 -9.51052 -9.18310 -8.28782 -6.32683 0.73233 1.37748 1.37934 1.50430 1.64061 1.96542 2.36929 3.00005 3.11971 3.65623 3.91348 4.04786 4.09854 4.12600 4.17938 4.25184 4.34773 4.36705 4.52862 4.56174 4.65014 4.72250 4.81359 4.84407 4.85240 4.89880 4.95890 4.99215 5.05036 5.12674 5.18855 5.20729 5.23009 5.32807 5.53900 5.59162 5.63909 5.72487 6.03684 6.13504 6.24307 6.36492 6.74941 7.33701 8.88416 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.005164 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.019085 B = 5420.434332 C = 5744.740433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.021 4.021 4 C -0.228 4.228 5 C -0.215 4.215 6 C -0.053 4.053 7 C 0.132 3.868 8 N -0.527 5.527 9 C 0.063 3.937 10 C -0.113 4.113 11 C -0.111 4.111 12 C 0.019 3.981 13 H 0.039 0.961 14 C -0.515 4.515 15 H 0.024 0.976 16 C 0.014 3.986 17 N -0.951 5.951 18 Si 0.945 3.055 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.244 1.244 22 C 0.083 3.917 23 O -0.183 6.183 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.158 0.842 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.017 0.983 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.041 0.959 39 H 0.266 0.734 40 H 0.061 0.939 41 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 -7.093 -7.917 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.071 4.071 4 C -0.247 4.247 5 C -0.236 4.236 6 C -0.104 4.104 7 C 0.005 3.995 8 N -0.250 5.250 9 C -0.065 4.065 10 C -0.151 4.151 11 C -0.149 4.149 12 C -0.001 4.001 13 H 0.057 0.943 14 C -0.554 4.554 15 H 0.042 0.958 16 C -0.183 4.183 17 N -0.592 5.592 18 Si 0.769 3.231 19 H -0.191 1.191 20 H -0.216 1.216 21 H -0.168 1.168 22 C -0.045 4.045 23 O -0.079 6.079 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.175 0.825 30 H 0.160 0.840 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.035 0.965 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -17.708 -6.714 -8.449 20.737 hybrid contribution 0.684 -0.085 1.119 1.315 sum -17.024 -6.799 -7.329 19.742 Atomic orbital electron populations 1.21750 0.92700 1.03427 1.02131 1.20252 0.97286 0.85473 1.04957 1.23107 1.03834 0.96294 0.83857 1.21812 1.07931 0.94587 1.00330 1.21838 1.06935 1.00092 0.94688 1.23828 1.03798 0.86874 0.95934 1.21135 0.88181 0.92501 0.97730 1.62443 1.04041 1.38221 1.20255 1.22081 0.97187 0.89744 0.97472 1.21641 0.93848 1.02406 0.97158 1.21745 0.98467 0.98592 0.96145 1.19122 0.92001 0.95014 0.93928 0.94324 1.21206 1.06307 1.29912 0.97957 0.95750 1.25930 0.95875 0.97762 0.98717 1.70069 1.13863 1.43498 1.31724 0.85767 0.76793 0.79731 0.80838 1.19051 1.21574 1.16791 1.21971 0.93731 0.99050 0.89708 1.83967 1.65410 1.22874 1.35697 0.89518 0.92413 0.93066 0.89623 0.87644 0.82479 0.83961 0.87135 0.86595 0.96476 0.88708 0.90183 0.91259 0.94882 0.94042 0.92561 0.92049 0.96783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.89 71.98 0.71 -1.33 16 2 C -0.04 -0.77 6.47 29.85 0.19 -0.58 16 3 C -0.02 -0.55 6.58 24.83 0.16 -0.39 16 4 C -0.23 -6.55 10.81 22.19 0.24 -6.31 16 5 C -0.22 -6.83 9.41 22.19 0.21 -6.62 16 6 C -0.05 -1.61 4.95 24.83 0.12 -1.48 16 7 C 0.13 3.59 5.91 85.56 0.51 4.09 16 8 N -0.53 -17.56 4.86 -900.93 -4.38 -21.93 16 9 C 0.06 1.95 5.14 86.33 0.44 2.40 16 10 C -0.11 -3.72 6.09 30.65 0.19 -3.53 16 11 C -0.11 -4.76 5.27 30.68 0.16 -4.60 16 12 C 0.02 0.88 1.94 -11.48 -0.02 0.86 16 13 H 0.04 1.84 5.26 -2.39 -0.01 1.82 16 14 C -0.52 -30.01 8.86 25.60 0.23 -29.78 16 15 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 16 C 0.01 0.83 5.47 84.65 0.46 1.29 16 17 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 18 Si 0.94 44.95 27.01 68.60 1.85 46.80 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.24 -10.80 6.80 99.48 0.68 -10.13 16 22 C 0.08 3.45 4.00 86.33 0.35 3.79 16 23 O -0.18 -5.49 10.25 -2.54 -0.03 -5.52 16 24 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 30 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.11 2.43 8.06 -2.39 -0.02 2.41 16 32 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.02 0.59 7.15 -2.39 -0.02 0.57 16 34 H 0.09 2.40 8.06 -2.38 -0.02 2.38 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.06 2.57 8.12 -2.39 -0.02 2.55 16 41 H 0.01 0.63 6.53 -2.39 -0.02 0.61 16 Total: -1.00 -68.84 324.97 2.65 -66.19 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.95 Total: 16.67 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 3.95 Total: -42.19 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -4.08 Total: -81.95 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.03 Total: -5.52 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.85 Total: 46.80 kcal Total: -68.84 2.65 -66.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597178047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.415 kcal (2) G-P(sol) polarization free energy of solvation -68.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds