Wall clock time and date at job start Mon Mar 30 2020 00:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09000 * 109.49884 * 59.65344 * 9 7 2 11 11 C 1.53042 * 109.49563 * 299.55806 * 9 7 2 12 12 C 1.53035 * 109.53631 * 178.68406 * 11 9 7 13 13 C 1.53193 * 109.31159 * 61.36328 * 12 11 9 14 14 N 1.46917 * 108.77980 * 305.36417 * 13 12 11 15 15 C 1.34780 * 120.63251 * 233.58794 * 14 13 12 16 16 O 1.21286 * 119.99936 * 180.02562 * 15 14 13 17 17 C 1.50691 * 120.00057 * 0.02562 * 15 14 13 18 18 H 1.09004 * 115.55125 * 325.58425 * 17 15 14 19 19 C 1.53000 * 117.50251 * 111.25288 * 17 15 14 20 20 C 1.52999 * 117.50210 * 179.91442 * 17 15 14 21 21 H 1.09001 * 117.49713 * 359.97438 * 20 17 15 22 22 C 1.52999 * 117.50143 * 145.02076 * 20 17 15 23 23 C 1.53000 * 117.49748 * 248.62293 * 22 20 17 24 24 C 1.53000 * 60.00317 * 252.51080 * 23 22 20 25 25 C 1.46927 * 118.73670 * 53.60859 * 14 13 12 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.45779 * 298.70791 * 11 9 7 28 28 H 1.09000 * 109.46192 * 58.66665 * 11 9 7 29 29 H 1.09000 * 109.50027 * 301.41385 * 12 11 9 30 30 H 1.08998 * 109.52563 * 181.33285 * 12 11 9 31 31 H 1.09007 * 109.58652 * 185.57296 * 13 12 11 32 32 H 1.09005 * 109.70231 * 65.22817 * 13 12 11 33 33 H 1.08999 * 117.50256 * 214.98100 * 19 17 15 34 34 H 1.09005 * 117.49971 * 359.97438 * 19 17 15 35 35 H 1.08994 * 115.54891 * 34.32850 * 22 20 17 36 36 H 1.09006 * 117.49820 * 359.97438 * 23 22 20 37 37 H 1.08998 * 117.50112 * 145.01711 * 23 22 20 38 38 H 1.09000 * 117.49959 * 252.51496 * 24 23 22 39 39 H 1.08999 * 117.50262 * 107.48646 * 24 23 22 40 40 H 1.09002 * 109.58645 * 186.61056 * 25 14 13 41 41 H 1.08994 * 109.70536 * 66.24930 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6232 -2.5529 -0.8949 11 6 0.3738 -2.5882 1.2456 12 6 -0.4166 -3.8984 1.2243 13 6 0.5594 -5.0791 1.2330 14 7 1.4999 -4.9236 0.1151 15 6 1.6754 -5.9176 -0.7780 16 8 2.4551 -5.7771 -1.6963 17 6 0.9028 -7.2036 -0.6357 18 1 0.7072 -7.5238 0.3877 19 6 -0.1675 -7.5048 -1.6867 20 6 1.1448 -8.2928 -1.6825 21 1 1.8626 -8.0791 -2.4745 22 6 1.0934 -9.7480 -1.2129 23 6 2.4051 -10.5356 -1.2082 24 6 1.3355 -10.8372 -2.2598 25 6 2.2458 -3.6641 -0.0105 26 1 -0.4850 0.8401 -0.0004 27 1 1.0046 -2.5589 2.1342 28 1 -0.3187 -1.7466 1.2643 29 1 -1.0290 -3.9393 0.3235 30 1 -1.0589 -3.9508 2.1034 31 1 0.0062 -6.0114 1.1183 32 1 1.1094 -5.0943 2.1740 33 1 -1.0670 -8.0235 -1.3549 34 1 -0.3132 -6.7726 -2.4810 35 1 0.3750 -9.9614 -0.4214 36 1 3.3046 -10.0171 -1.5402 37 1 2.5500 -11.2673 -0.4134 38 1 0.7766 -11.7674 -2.1569 39 1 1.5313 -10.5170 -3.2832 40 1 2.8054 -3.6625 -0.9459 41 1 2.9348 -3.5598 0.8277 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:10 Heat of formation + Delta-G solvation = 1.036167 kcal Electronic energy + Delta-G solvation = -20006.634193 eV Core-core repulsion = 17080.431496 eV Total energy + Delta-G solvation = -2926.202697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.95645 -38.12009 -36.68954 -34.94553 -33.43814 -31.30223 -30.23301 -25.81167 -24.98183 -23.80962 -22.97651 -22.38083 -21.64403 -20.28362 -19.56767 -18.14066 -17.06770 -16.19968 -15.98439 -15.16859 -14.74889 -14.70508 -14.23928 -13.56415 -13.48336 -13.26852 -12.74963 -12.69784 -12.16683 -12.10771 -11.96213 -11.73706 -11.45264 -11.26482 -10.96516 -10.91154 -10.82273 -10.75193 -10.31758 -10.10497 -9.95401 -9.80449 -9.57506 -9.46077 -9.21879 -8.82385 -8.38118 -7.87399 -6.01758 -4.08872 2.85811 3.31634 3.34882 3.36006 3.40743 3.63506 4.16088 4.37922 4.43453 4.68354 4.76621 4.89363 5.09163 5.17068 5.19537 5.24990 5.27983 5.45193 5.48668 5.66671 5.68171 5.73598 5.80849 5.93057 5.97846 6.04838 6.13669 6.27935 6.34479 6.41880 6.49679 6.67374 6.82397 6.99388 7.18217 7.34206 7.69114 7.92450 8.04376 8.07703 8.37882 8.68887 8.94664 9.55888 11.03808 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040531 B = 0.004068 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.656164 B = 6881.684006 C = 7170.513124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.110 3.890 14 N -0.599 5.599 15 C 0.538 3.462 16 O -0.554 6.554 17 C -0.181 4.181 18 H 0.121 0.879 19 C -0.145 4.145 20 C -0.093 4.093 21 H 0.117 0.883 22 C -0.123 4.123 23 C -0.178 4.178 24 C -0.176 4.176 25 C 0.117 3.883 26 H 0.261 0.739 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 -17.570 1.408 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.013 4.013 14 N -0.330 5.330 15 C 0.325 3.675 16 O -0.433 6.433 17 C -0.202 4.202 18 H 0.139 0.861 19 C -0.182 4.182 20 C -0.112 4.112 21 H 0.134 0.866 22 C -0.141 4.141 23 C -0.214 4.214 24 C -0.213 4.213 25 C -0.004 4.004 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.559 -17.341 0.939 17.437 hybrid contribution 0.336 1.004 0.251 1.087 sum -1.224 -16.338 1.190 16.427 Atomic orbital electron populations 1.69868 1.05895 1.26577 1.50444 1.24938 0.94866 0.99075 0.94925 0.86634 0.79584 0.82963 0.78679 1.20224 1.21310 1.20248 1.21050 0.92966 0.90316 1.51047 0.92537 1.18964 0.92950 0.91119 0.94807 0.95294 1.21626 0.99433 0.95391 0.98566 1.21994 0.97644 0.96644 1.00960 1.21755 0.91388 0.99154 0.89040 1.48200 1.42029 1.15959 1.26779 1.19543 0.82198 0.83952 0.81786 1.90645 1.38052 1.81488 1.33097 1.22297 1.04532 0.95897 0.97478 0.86108 1.22986 0.92608 1.02483 1.00135 1.21780 1.00137 0.89100 1.00147 0.86552 1.21721 1.00308 0.90518 1.01594 1.22956 0.93519 1.03074 1.01897 1.22936 1.03175 0.99399 0.95777 1.21999 0.95097 0.81869 1.01470 0.92926 0.94598 0.88687 0.92349 0.92509 0.90953 0.92099 0.87960 0.88087 0.87762 0.88526 0.88838 0.88834 0.88626 0.90373 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.05 11.33 55.43 0.63 -24.42 16 2 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.07 8.56 -34.44 -0.29 -14.37 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 12 C -0.13 -2.40 6.08 -26.61 -0.16 -2.56 16 13 C 0.11 1.73 6.30 -3.71 -0.02 1.71 16 14 N -0.60 -11.37 2.97 -172.77 -0.51 -11.89 16 15 C 0.54 10.03 7.48 -10.99 -0.08 9.95 16 16 O -0.55 -12.29 15.67 5.55 0.09 -12.21 16 17 C -0.18 -2.49 4.68 -91.78 -0.43 -2.92 16 18 H 0.12 1.41 6.82 -51.93 -0.35 1.05 16 19 C -0.14 -1.75 9.96 -26.69 -0.27 -2.01 16 20 C -0.09 -1.16 5.36 -90.58 -0.49 -1.64 16 21 H 0.12 1.67 7.67 -51.93 -0.40 1.27 16 22 C -0.12 -1.22 5.85 -90.62 -0.53 -1.75 16 23 C -0.18 -1.65 10.25 -26.73 -0.27 -1.93 16 24 C -0.18 -1.53 10.25 -26.73 -0.27 -1.80 16 25 C 0.12 2.58 5.66 -3.71 -0.02 2.56 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.92 5.68 -51.93 -0.29 0.63 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.86 7.01 -51.93 -0.36 1.50 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -30.02 328.91 -9.90 -39.92 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.76 Total: 2.42 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -3.27 Total: -14.97 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.11 Total: -36.30 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.02 -9.90 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.956 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds