Wall clock time and date at job start Mon Mar 30 2020 00:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00585 * 2 1 4 4 H 1.48503 * 109.47249 * 270.00380 * 3 2 1 5 5 H 1.48505 * 109.46932 * 30.00024 * 3 2 1 6 6 H 1.48500 * 109.47355 * 149.99952 * 3 2 1 7 7 C 1.37884 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99536 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99996 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.49688 * 60.06262 * 9 7 2 11 11 C 1.53037 * 109.49682 * 299.99446 * 9 7 2 12 12 C 1.53048 * 109.53762 * 178.65114 * 11 9 7 13 13 C 1.53190 * 109.30978 * 61.36613 * 12 11 9 14 14 N 1.46924 * 108.77620 * 305.36609 * 13 12 11 15 15 C 1.34777 * 120.63123 * 233.58252 * 14 13 12 16 16 O 1.21290 * 119.99639 * 4.73287 * 15 14 13 17 17 C 1.50704 * 120.00160 * 184.45429 * 15 14 13 18 18 C 1.52996 * 119.29527 * 293.43240 * 17 15 14 19 19 C 1.53000 * 60.37962 * 248.69775 * 18 17 15 20 20 H 1.08995 * 119.29747 * 111.31085 * 19 18 17 21 21 C 1.54271 * 118.19596 * 266.38622 * 19 18 17 22 22 C 1.54893 * 104.19235 * 87.79053 * 21 19 18 23 23 C 1.54265 * 117.41271 * 87.77993 * 17 15 14 24 24 C 1.46924 * 118.73996 * 53.85939 * 14 13 12 25 25 H 0.97007 * 119.99665 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46002 * 58.63826 * 11 9 7 27 27 H 1.08998 * 109.44898 * 298.66670 * 11 9 7 28 28 H 1.08995 * 109.49509 * 301.41736 * 12 11 9 29 29 H 1.08995 * 109.49756 * 181.31749 * 12 11 9 30 30 H 1.08995 * 109.58846 * 185.57577 * 13 12 11 31 31 H 1.08999 * 109.70231 * 65.21863 * 13 12 11 32 32 H 1.08999 * 117.46613 * 356.29677 * 18 17 15 33 33 H 1.09000 * 117.45755 * 141.12231 * 18 17 15 34 34 H 1.09002 * 110.48431 * 206.46724 * 21 19 18 35 35 H 1.08997 * 110.48816 * 329.10863 * 21 19 18 36 36 H 1.09002 * 110.75598 * 80.37694 * 22 21 19 37 37 H 1.09000 * 110.75346 * 203.73905 * 22 21 19 38 38 H 1.09000 * 110.48069 * 235.05135 * 23 17 15 39 39 H 1.09000 * 110.48633 * 357.68726 * 23 17 15 40 40 H 1.09008 * 109.58445 * 65.92996 * 24 14 13 41 41 H 1.09003 * 109.58840 * 186.34795 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8756 -0.6815 0.8893 11 6 4.0218 -0.4727 -1.2506 12 6 5.5519 -0.4427 -1.2352 13 6 6.0869 -1.8780 -1.2533 14 7 5.4867 -2.6205 -0.1366 15 6 6.2635 -3.2737 0.7501 16 8 7.4710 -3.1820 0.6815 17 6 5.6318 -4.1130 1.8307 18 6 4.8096 -3.4294 2.9251 19 6 6.1506 -4.0756 3.2789 20 1 6.9896 -3.4410 3.5641 21 6 6.1464 -5.5324 3.7862 22 6 6.2231 -6.3845 2.4950 23 6 5.3158 -5.5848 1.4934 24 6 4.0232 -2.6426 -0.0084 25 1 -0.4850 0.8401 0.0004 26 1 3.6388 0.5477 -1.2625 27 1 3.6778 -1.0002 -2.1402 28 1 5.8968 0.0628 -0.3333 29 1 5.9141 0.0917 -2.1135 30 1 7.1712 -1.8653 -1.1428 31 1 5.8213 -2.3574 -2.1955 32 1 4.7639 -2.3405 2.9133 33 1 3.9043 -3.9340 3.2627 34 1 7.0147 -5.7187 4.4183 35 1 5.2255 -5.7447 4.3293 36 1 7.2484 -6.4402 2.1292 37 1 5.8182 -7.3819 2.6658 38 1 4.2638 -5.8013 1.6792 39 1 5.5736 -5.8024 0.4569 40 1 3.5907 -3.1816 -0.8514 41 1 3.7454 -3.1345 0.9238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:08:08 Heat of formation + Delta-G solvation = -16.770591 kcal Electronic energy + Delta-G solvation = -20956.140977 eV Core-core repulsion = 18029.166121 eV Total energy + Delta-G solvation = -2926.974855 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48809 -38.40291 -36.77717 -33.31740 -32.17594 -31.41379 -30.52618 -28.42714 -25.27078 -25.15852 -22.91196 -22.15879 -21.08497 -20.29892 -19.52861 -18.04937 -16.95349 -16.38751 -15.92419 -15.22853 -14.78627 -14.56324 -14.08461 -13.67515 -13.40234 -13.15466 -13.02752 -12.95699 -12.51831 -12.45468 -12.34837 -11.73534 -11.32239 -11.19955 -11.16510 -11.02123 -10.92549 -10.72602 -10.38577 -10.28552 -10.15572 -9.91482 -9.61654 -9.46607 -9.16057 -9.07016 -8.61637 -8.08250 -6.15870 -4.16327 2.91627 3.21374 3.32046 3.33773 3.35068 3.67093 4.33777 4.47989 4.69785 4.76033 4.90003 5.13843 5.18536 5.35239 5.40978 5.44590 5.47112 5.57034 5.61464 5.69008 5.81252 5.86332 5.90999 5.93737 5.95191 6.03720 6.07248 6.12376 6.20085 6.25511 6.35985 6.37978 6.43890 6.66683 6.69844 6.96655 7.00811 7.39758 7.62428 7.89000 8.39037 8.55142 8.86487 9.46242 10.96805 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.006478 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.694741 B = 4321.077512 C = 4912.751851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.006 3.994 10 H 0.030 0.970 11 C -0.123 4.123 12 C -0.137 4.137 13 C 0.115 3.885 14 N -0.602 5.602 15 C 0.555 3.445 16 O -0.558 6.558 17 C -0.167 4.167 18 C -0.131 4.131 19 C -0.136 4.136 20 H 0.111 0.889 21 C -0.094 4.094 22 C -0.120 4.120 23 C -0.077 4.077 24 C 0.121 3.879 25 H 0.265 0.735 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.248 -8.558 3.309 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.175 4.175 13 C -0.007 4.007 14 N -0.333 5.333 15 C 0.343 3.657 16 O -0.437 6.437 17 C -0.170 4.170 18 C -0.168 4.168 19 C -0.154 4.154 20 H 0.129 0.871 21 C -0.131 4.131 22 C -0.158 4.158 23 C -0.114 4.114 24 C -0.001 4.001 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.715 -8.405 3.250 14.000 hybrid contribution 0.238 1.222 -0.242 1.268 sum 10.953 -7.183 3.009 13.440 Atomic orbital electron populations 1.69886 1.06247 1.27053 1.50313 1.24962 0.94647 0.98963 0.94272 0.86866 0.79912 0.83652 0.77914 1.20576 1.22508 1.19129 1.20881 0.88206 0.94668 1.51610 0.90553 1.19540 0.96812 0.91263 0.93766 0.95226 1.21994 0.92195 1.00638 1.01194 1.21987 0.98344 0.95727 1.01493 1.21525 0.98628 0.91905 0.88688 1.48284 1.08504 1.49458 1.27048 1.19400 0.86157 0.78816 0.81344 1.90619 1.14513 1.64466 1.74089 1.22215 1.07354 0.97148 0.90266 1.23255 0.94630 1.00651 0.98283 1.23387 0.98702 0.98143 0.95209 0.87056 1.21940 1.01997 0.91998 0.97170 1.23027 1.00114 0.98095 0.94561 1.22196 1.00056 0.89618 0.99563 1.22063 0.76056 0.99768 1.02203 0.92555 0.93266 0.91938 0.92266 0.91836 0.89916 0.91817 0.87680 0.87809 0.91177 0.91076 0.91188 0.91280 0.90417 0.91098 0.91898 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.96 55.43 0.77 -25.61 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 21.38 24.39 -169.99 -4.15 17.24 16 4 H -0.28 -6.57 6.86 56.52 0.39 -6.18 16 5 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 7 C -0.52 -13.49 9.15 -34.44 -0.31 -13.81 16 8 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.01 0.13 1.85 -91.43 -0.17 -0.04 16 10 H 0.03 0.69 7.21 -51.93 -0.37 0.32 16 11 C -0.12 -2.52 4.65 -26.69 -0.12 -2.65 16 12 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 13 C 0.12 1.92 6.44 -3.71 -0.02 1.90 16 14 N -0.60 -10.75 2.97 -172.50 -0.51 -11.27 16 15 C 0.56 9.99 7.08 -10.98 -0.08 9.91 16 16 O -0.56 -11.48 16.49 5.55 0.09 -11.38 16 17 C -0.17 -2.47 1.35 -154.54 -0.21 -2.68 16 18 C -0.13 -1.83 8.02 -26.73 -0.21 -2.04 16 19 C -0.14 -1.79 6.78 -89.50 -0.61 -2.40 16 20 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 21 C -0.09 -0.98 6.63 -25.07 -0.17 -1.15 16 22 C -0.12 -1.28 6.96 -23.54 -0.16 -1.44 16 23 C -0.08 -0.95 6.59 -23.88 -0.16 -1.11 16 24 C 0.12 2.26 5.50 -3.49 -0.02 2.24 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.05 1.09 3.25 -51.93 -0.17 0.92 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.91 8.00 -51.93 -0.42 0.49 16 40 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 41 H 0.09 1.53 4.97 -51.93 -0.26 1.27 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -30.10 313.40 -8.25 -38.35 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.68 Total: 1.84 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -2.51 Total: -13.89 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.26 Total: -36.88 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.15 Total: 17.24 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.10 -8.25 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.583 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds