Wall clock time and date at job start Mon Mar 30 2020 00:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00585 * 2 1 4 4 H 1.48503 * 109.47249 * 270.00380 * 3 2 1 5 5 H 1.48505 * 109.46932 * 30.00024 * 3 2 1 6 6 H 1.48500 * 109.47355 * 149.99952 * 3 2 1 7 7 C 1.37884 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99536 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99996 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.49688 * 60.06262 * 9 7 2 11 11 C 1.53037 * 109.49682 * 299.99446 * 9 7 2 12 12 C 1.53048 * 109.53762 * 178.65114 * 11 9 7 13 13 C 1.53190 * 109.30978 * 61.36613 * 12 11 9 14 14 N 1.46924 * 108.77620 * 305.36609 * 13 12 11 15 15 C 1.34777 * 120.63123 * 233.58252 * 14 13 12 16 16 O 1.21290 * 119.99639 * 4.73287 * 15 14 13 17 17 C 1.50704 * 120.00160 * 184.45429 * 15 14 13 18 18 C 1.52996 * 119.29527 * 293.43240 * 17 15 14 19 19 C 1.53000 * 60.37962 * 248.69775 * 18 17 15 20 20 H 1.08995 * 119.29747 * 111.31085 * 19 18 17 21 21 C 1.54271 * 118.19596 * 266.38622 * 19 18 17 22 22 C 1.54893 * 104.19235 * 87.79053 * 21 19 18 23 23 C 1.54265 * 117.41271 * 87.77993 * 17 15 14 24 24 C 1.46924 * 118.73996 * 53.85939 * 14 13 12 25 25 H 0.97007 * 119.99665 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46002 * 58.63826 * 11 9 7 27 27 H 1.08998 * 109.44898 * 298.66670 * 11 9 7 28 28 H 1.08995 * 109.49509 * 301.41736 * 12 11 9 29 29 H 1.08995 * 109.49756 * 181.31749 * 12 11 9 30 30 H 1.08995 * 109.58846 * 185.57577 * 13 12 11 31 31 H 1.08999 * 109.70231 * 65.21863 * 13 12 11 32 32 H 1.08999 * 117.46613 * 356.29677 * 18 17 15 33 33 H 1.09000 * 117.45755 * 141.12231 * 18 17 15 34 34 H 1.09002 * 110.48431 * 206.46724 * 21 19 18 35 35 H 1.08997 * 110.48816 * 329.10863 * 21 19 18 36 36 H 1.09002 * 110.75598 * 80.37694 * 22 21 19 37 37 H 1.09000 * 110.75346 * 203.73905 * 22 21 19 38 38 H 1.09000 * 110.48069 * 235.05135 * 23 17 15 39 39 H 1.09000 * 110.48633 * 357.68726 * 23 17 15 40 40 H 1.09008 * 109.58445 * 65.92996 * 24 14 13 41 41 H 1.09003 * 109.58840 * 186.34795 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8756 -0.6815 0.8893 11 6 4.0218 -0.4727 -1.2506 12 6 5.5519 -0.4427 -1.2352 13 6 6.0869 -1.8780 -1.2533 14 7 5.4867 -2.6205 -0.1366 15 6 6.2635 -3.2737 0.7501 16 8 7.4710 -3.1820 0.6815 17 6 5.6318 -4.1130 1.8307 18 6 4.8096 -3.4294 2.9251 19 6 6.1506 -4.0756 3.2789 20 1 6.9896 -3.4410 3.5641 21 6 6.1464 -5.5324 3.7862 22 6 6.2231 -6.3845 2.4950 23 6 5.3158 -5.5848 1.4934 24 6 4.0232 -2.6426 -0.0084 25 1 -0.4850 0.8401 0.0004 26 1 3.6388 0.5477 -1.2625 27 1 3.6778 -1.0002 -2.1402 28 1 5.8968 0.0628 -0.3333 29 1 5.9141 0.0917 -2.1135 30 1 7.1712 -1.8653 -1.1428 31 1 5.8213 -2.3574 -2.1955 32 1 4.7639 -2.3405 2.9133 33 1 3.9043 -3.9340 3.2627 34 1 7.0147 -5.7187 4.4183 35 1 5.2255 -5.7447 4.3293 36 1 7.2484 -6.4402 2.1292 37 1 5.8182 -7.3819 2.6658 38 1 4.2638 -5.8013 1.6792 39 1 5.5736 -5.8024 0.4569 40 1 3.5907 -3.1816 -0.8514 41 1 3.7454 -3.1345 0.9238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597901466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:08:07 Heat of formation + Delta-G solvation = -33.894812 kcal Electronic energy + Delta-G solvation = -20956.883538 eV Core-core repulsion = 18029.166121 eV Total energy + Delta-G solvation = -2927.717417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.75688 -39.67153 -38.30455 -35.16877 -33.70145 -32.65067 -32.08012 -29.42959 -27.04339 -26.69915 -24.12011 -23.44667 -22.54853 -21.42472 -20.91828 -19.46941 -18.72084 -17.86264 -17.34750 -16.70002 -16.24457 -15.85490 -15.44779 -15.31072 -14.89114 -14.66803 -14.22091 -14.14197 -13.99707 -13.88144 -13.78501 -13.03387 -12.91174 -12.86549 -12.41023 -12.15842 -12.04264 -11.95770 -11.92768 -11.84927 -11.59657 -11.34495 -11.25561 -10.98329 -10.72877 -10.65906 -10.46520 -9.58540 -8.29539 -6.32488 1.28441 1.35626 1.43914 1.52370 2.00010 2.31165 2.55787 3.06072 3.42756 3.56369 3.70085 3.83104 3.99801 4.01650 4.14845 4.20742 4.31555 4.43631 4.45703 4.48842 4.64117 4.65278 4.68491 4.73578 4.83175 4.89480 4.94335 4.96456 4.99254 5.06369 5.11177 5.16011 5.18757 5.27794 5.32288 5.46426 5.49509 5.59992 5.73749 6.28084 6.42853 6.74229 7.13070 7.33249 8.86292 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.006478 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.694741 B = 4321.077512 C = 4912.751851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.022 3.978 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.302 1.302 6 H -0.257 1.257 7 C -0.510 4.510 8 H 0.048 0.952 9 C 0.006 3.994 10 H 0.017 0.983 11 C -0.123 4.123 12 C -0.129 4.129 13 C 0.112 3.888 14 N -0.604 5.604 15 C 0.551 3.449 16 O -0.587 6.587 17 C -0.184 4.184 18 C -0.133 4.133 19 C -0.128 4.128 20 H 0.100 0.900 21 C -0.088 4.088 22 C -0.115 4.115 23 C -0.076 4.076 24 C 0.133 3.867 25 H 0.265 0.735 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.614 -9.384 3.468 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.230 1.230 6 H -0.182 1.182 7 C -0.548 4.548 8 H 0.066 0.934 9 C -0.013 4.013 10 H 0.035 0.965 11 C -0.161 4.161 12 C -0.167 4.167 13 C -0.010 4.010 14 N -0.334 5.334 15 C 0.340 3.660 16 O -0.468 6.468 17 C -0.187 4.187 18 C -0.170 4.170 19 C -0.147 4.147 20 H 0.119 0.881 21 C -0.125 4.125 22 C -0.152 4.152 23 C -0.114 4.114 24 C 0.011 3.989 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.098 -9.238 3.400 15.597 hybrid contribution -0.192 1.439 -0.291 1.480 sum 11.906 -7.799 3.109 14.569 Atomic orbital electron populations 1.70013 1.07889 1.27854 1.52587 1.25677 0.95211 1.02301 0.94431 0.85969 0.78878 0.79754 0.78481 1.19321 1.23006 1.18157 1.21148 0.90460 0.93384 1.49822 0.93367 1.19456 0.94103 0.93618 0.94152 0.96491 1.21913 0.94537 0.99438 1.00201 1.21919 0.95758 0.96503 1.02482 1.21650 0.98620 0.91569 0.89180 1.48330 1.07986 1.49632 1.27480 1.19944 0.85867 0.78597 0.81591 1.90595 1.15748 1.65555 1.74926 1.22349 1.08280 0.98034 0.90062 1.23235 0.95836 0.99658 0.98235 1.23529 0.97597 0.99627 0.93913 0.88143 1.21994 1.03550 0.89604 0.97400 1.23017 0.99337 0.99085 0.93760 1.22274 1.01259 0.88084 0.99763 1.21814 0.76655 0.97603 1.02810 0.92584 0.94612 0.91527 0.93293 0.88771 0.89799 0.89883 0.89704 0.86241 0.89762 0.89428 0.92058 0.88721 0.89193 0.91847 0.91583 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.58 13.96 21.45 0.30 -56.28 16 2 C 0.02 1.20 5.45 84.66 0.46 1.66 16 3 Si 0.94 44.07 24.39 68.60 1.67 45.74 16 4 H -0.27 -11.92 6.86 99.48 0.68 -11.24 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.26 -11.52 6.53 99.48 0.65 -10.87 16 7 C -0.51 -26.95 9.15 25.60 0.23 -26.71 16 8 H 0.05 2.76 7.99 -2.91 -0.02 2.74 16 9 C 0.01 0.27 1.85 -11.32 -0.02 0.25 16 10 H 0.02 0.78 7.21 -2.39 -0.02 0.77 16 11 C -0.12 -4.87 4.65 30.62 0.14 -4.73 16 12 C -0.13 -4.18 6.08 30.67 0.19 -3.99 16 13 C 0.11 3.52 6.44 86.36 0.56 4.07 16 14 N -0.60 -20.87 2.97 -818.06 -2.43 -23.29 16 15 C 0.55 19.36 7.08 87.66 0.62 19.98 16 16 O -0.59 -23.80 16.49 -3.06 -0.05 -23.85 16 17 C -0.18 -5.24 1.35 -52.20 -0.07 -5.31 16 18 C -0.13 -3.57 8.02 30.59 0.25 -3.32 16 19 C -0.13 -3.19 6.78 -10.07 -0.07 -3.25 16 20 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 21 C -0.09 -1.59 6.63 31.67 0.21 -1.38 16 22 C -0.11 -2.10 6.96 32.66 0.23 -1.87 16 23 C -0.08 -1.74 6.59 32.44 0.21 -1.52 16 24 C 0.13 4.87 5.50 86.51 0.48 5.35 16 25 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 26 H 0.04 1.51 3.25 -2.39 -0.01 1.50 16 27 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.08 2.66 7.00 -2.39 -0.02 2.65 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.53 8.00 -2.39 -0.02 1.51 16 40 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.09 3.24 4.97 -2.39 -0.01 3.23 16 Total: -1.00 -65.00 313.40 3.83 -61.17 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.92 Total: 17.28 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 3.41 Total: -20.77 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -2.13 Total: -79.57 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.67 Total: 45.74 kcal Total: -65.00 3.83 -61.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.274 kcal (2) G-P(sol) polarization free energy of solvation -64.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds