Wall clock time and date at job start Mon Mar 30 2020 00:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48499 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47178 * 300.00409 * 3 2 1 6 6 H 1.48499 * 109.47216 * 60.00377 * 3 2 1 7 7 C 1.37876 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00127 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49928 * 59.93836 * 9 7 2 11 11 C 1.53041 * 109.49484 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.53703 * 181.34658 * 11 9 7 13 13 C 1.53193 * 109.31405 * 298.64058 * 12 11 9 14 14 N 1.46924 * 108.77511 * 54.63084 * 13 12 11 15 15 C 1.34781 * 120.62928 * 126.37056 * 14 13 12 16 16 O 1.21611 * 120.00144 * 185.19942 * 15 14 13 17 17 C 1.47101 * 120.00063 * 5.19308 * 15 14 13 18 18 C 1.31552 * 118.10298 * 75.15948 * 17 15 14 19 19 C 1.50091 * 123.79340 * 180.40162 * 18 17 15 20 20 C 1.53008 * 110.02712 * 342.91921 * 19 18 17 21 21 C 1.53072 * 108.67241 * 49.76582 * 20 19 18 22 22 C 1.50094 * 118.10858 * 255.13924 * 17 15 14 23 23 C 1.46921 * 118.74272 * 306.64704 * 14 13 12 24 24 H 0.97007 * 120.00033 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46164 * 61.33438 * 11 9 7 26 26 H 1.08996 * 109.46716 * 301.36894 * 11 9 7 27 27 H 1.08996 * 109.50018 * 178.68711 * 12 11 9 28 28 H 1.09004 * 109.49342 * 58.59358 * 12 11 9 29 29 H 1.09003 * 109.58627 * 294.84729 * 13 12 11 30 30 H 1.08997 * 109.58524 * 174.42147 * 13 12 11 31 31 H 1.08001 * 118.10348 * 0.41688 * 18 17 15 32 32 H 1.09004 * 109.36536 * 103.05646 * 19 18 17 33 33 H 1.09005 * 109.36285 * 222.78701 * 19 18 17 34 34 H 1.08995 * 109.63861 * 169.38755 * 20 19 18 35 35 H 1.09002 * 109.62909 * 289.98123 * 20 19 18 36 36 H 1.09003 * 109.66132 * 172.22516 * 21 20 19 37 37 H 1.08994 * 109.65462 * 51.60294 * 21 20 19 38 38 H 1.08997 * 109.35845 * 283.03668 * 22 17 15 39 39 H 1.09006 * 109.36033 * 42.75808 * 22 17 15 40 40 H 1.08995 * 109.59044 * 173.14733 * 23 14 13 41 41 H 1.09011 * 109.58207 * 293.56866 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6229 -2.5567 -0.8896 11 6 2.2449 -3.6628 -0.0018 12 6 1.4809 -4.9885 -0.0357 13 6 0.6059 -5.1012 1.2167 14 7 -0.2525 -3.9120 1.3024 15 6 -1.5890 -4.0371 1.4243 16 8 -2.2971 -3.0487 1.3993 17 6 -2.1911 -5.3693 1.5876 18 6 -2.0820 -5.9594 2.7583 19 6 -2.6393 -7.3193 3.0628 20 6 -3.6759 -7.7092 2.0071 21 6 -3.0716 -7.4816 0.6193 22 6 -2.8949 -5.9764 0.4091 23 6 0.3729 -2.5837 1.2466 24 1 -0.4850 0.8401 0.0004 25 1 2.8563 -3.6192 0.8995 26 1 2.8869 -3.5912 -0.8797 27 1 2.1895 -5.8163 -0.0602 28 1 0.8504 -5.0224 -0.9243 29 1 1.2400 -5.1587 2.1015 30 1 -0.0139 -5.9953 1.1501 31 1 -1.5614 -5.4349 3.5459 32 1 -1.8303 -8.0500 3.0619 33 1 -3.1118 -7.3046 4.0450 34 1 -3.9375 -8.7611 2.1215 35 1 -4.5671 -7.0925 2.1237 36 1 -3.7409 -7.8817 -0.1423 37 1 -2.1026 -7.9765 0.5557 38 1 -3.8734 -5.5104 0.2932 39 1 -2.3047 -5.8061 -0.4913 40 1 -0.4007 -1.8172 1.1998 41 1 0.9876 -2.4317 2.1339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904150.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:24 Heat of formation + Delta-G solvation = -45.718360 kcal Electronic energy + Delta-G solvation = -20660.629753 eV Core-core repulsion = 17732.399628 eV Total energy + Delta-G solvation = -2928.230125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83490 -37.80682 -36.47641 -33.37401 -31.88372 -31.00916 -30.78508 -29.65318 -25.16128 -24.86644 -23.27131 -22.50537 -21.78281 -20.19174 -18.67917 -17.51895 -16.78877 -16.08535 -15.61767 -14.69973 -14.51479 -14.40401 -13.88427 -13.78862 -13.63062 -13.36835 -12.74639 -12.64165 -12.52839 -12.39243 -12.32201 -11.98180 -11.80030 -10.99857 -10.90600 -10.89288 -10.80162 -10.47237 -10.45497 -10.36613 -10.22168 -9.86626 -9.24912 -9.11568 -8.86876 -8.68666 -8.41676 -7.70301 -5.97796 -4.07050 2.03772 3.26986 3.31631 3.39259 3.42322 3.84524 4.44147 4.67899 4.72221 4.83268 5.14998 5.27234 5.31117 5.31894 5.40161 5.48638 5.53095 5.55269 5.68592 5.75809 5.81740 5.95649 5.96280 6.00831 6.07339 6.21296 6.25402 6.33977 6.51784 6.63183 6.69872 6.85128 6.88320 6.99817 7.18067 7.33577 7.66943 7.89765 8.02479 8.29718 8.40956 8.90377 8.98527 9.58713 11.07374 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.005182 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.700230 B = 5402.473884 C = 5808.782060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.111 3.889 14 N -0.601 5.601 15 C 0.538 3.462 16 O -0.535 6.535 17 C -0.134 4.134 18 C -0.132 4.132 19 C -0.086 4.086 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.075 4.075 23 C 0.111 3.889 24 H 0.263 0.737 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 -16.723 3.648 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.012 4.012 14 N -0.333 5.333 15 C 0.325 3.675 16 O -0.413 6.413 17 C -0.137 4.137 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.112 4.112 23 C -0.009 4.009 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.140 0.860 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.762 -16.037 3.639 16.870 hybrid contribution 0.589 1.002 0.057 1.164 sum -3.173 -15.035 3.696 15.804 Atomic orbital electron populations 1.69909 1.05741 1.26707 1.49395 1.25064 0.94869 0.99274 0.94865 0.86541 0.80040 0.83826 0.77631 1.19783 1.21001 1.20983 1.21118 0.92927 0.90118 1.51763 0.92311 1.18887 0.92632 0.92321 0.94105 0.95378 1.21628 0.98546 0.94128 1.00522 1.21946 0.98591 0.99032 0.97584 1.21607 0.93389 0.88050 0.98185 1.48520 1.05280 1.08920 1.70571 1.18667 0.82566 0.88968 0.77322 1.90820 1.60821 1.39298 1.50331 1.20920 1.00963 0.94914 0.96893 1.22429 0.99877 0.96473 0.96324 1.20437 0.98459 0.94183 0.99176 1.21569 0.98520 1.01035 0.94828 1.21542 1.01241 0.95565 0.97090 1.20285 1.00546 0.94873 0.95519 1.22202 0.98739 0.81456 0.98532 0.92708 0.93224 0.93042 0.92272 0.92213 0.92318 0.90933 0.87545 0.90523 0.90902 0.91749 0.91582 0.91436 0.91591 0.90174 0.90717 0.85951 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 11.39 55.43 0.63 -25.49 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.28 8.56 -34.44 -0.29 -14.58 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.04 1.00 2.23 -91.88 -0.21 0.79 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 12 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 13 C 0.11 1.80 6.15 -3.71 -0.02 1.78 16 14 N -0.60 -12.45 2.98 -174.43 -0.52 -12.97 16 15 C 0.54 11.34 6.83 -12.66 -0.09 11.25 16 16 O -0.54 -13.90 16.52 5.27 0.09 -13.81 16 17 C -0.13 -2.11 3.80 -103.17 -0.39 -2.50 16 18 C -0.13 -1.75 8.89 -36.45 -0.32 -2.07 16 19 C -0.09 -0.83 6.12 -28.17 -0.17 -1.00 16 20 C -0.12 -1.12 5.97 -26.69 -0.16 -1.28 16 21 C -0.12 -1.15 5.99 -26.69 -0.16 -1.31 16 22 C -0.07 -1.00 5.79 -28.18 -0.16 -1.17 16 23 C 0.11 2.75 5.39 -3.94 -0.02 2.73 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.01 6.12 -51.93 -0.32 0.69 16 31 H 0.11 1.47 7.95 -52.49 -0.42 1.05 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.12 3.56 5.11 -51.93 -0.27 3.30 16 41 H 0.04 1.02 8.14 -51.92 -0.42 0.59 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -31.76 321.27 -9.25 -41.01 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.88 Total: 0.40 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.39 Total: -10.43 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.11 Total: -38.45 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.76 -9.25 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904150.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.708 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds