Wall clock time and date at job start Mon Mar 30 2020 00:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99953 * 2 1 4 4 H 1.48496 * 109.47026 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47261 * 300.00448 * 3 2 1 6 6 H 1.48502 * 109.46658 * 60.00460 * 3 2 1 7 7 C 1.37879 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00012 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.49343 * 299.93521 * 9 7 2 11 11 C 1.53043 * 109.49679 * 59.99608 * 9 7 2 12 12 C 1.53045 * 109.53613 * 181.35017 * 11 9 7 13 13 C 1.53193 * 109.31211 * 298.63732 * 12 11 9 14 14 N 1.46927 * 108.77386 * 54.63774 * 13 12 11 15 15 C 1.34777 * 120.63303 * 126.36982 * 14 13 12 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.72079 * 15 14 13 18 18 H 1.09001 * 115.55767 * 326.00957 * 17 15 14 19 19 C 1.53120 * 117.51614 * 111.81621 * 17 15 14 20 20 C 1.52460 * 59.85918 * 107.44649 * 19 17 15 21 21 C 1.53252 * 128.58235 * 117.59858 * 20 19 17 22 22 C 1.53897 * 86.88141 * 114.94857 * 21 20 19 23 23 C 1.53255 * 128.58777 * 242.40035 * 20 19 17 24 24 C 1.46925 * 118.74028 * 306.63705 * 14 13 12 25 25 H 0.96998 * 120.00293 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.45653 * 61.33287 * 11 9 7 27 27 H 1.08988 * 109.46264 * 301.37349 * 11 9 7 28 28 H 1.08996 * 109.49670 * 178.68970 * 12 11 9 29 29 H 1.09000 * 109.49698 * 58.59077 * 12 11 9 30 30 H 1.08997 * 109.59146 * 294.85081 * 13 12 11 31 31 H 1.08999 * 109.70364 * 174.49312 * 13 12 11 32 32 H 1.08995 * 117.51549 * 214.89500 * 19 17 15 33 33 H 1.09006 * 117.51066 * 359.97438 * 19 17 15 34 34 H 1.08998 * 113.65037 * 229.44500 * 21 20 19 35 35 H 1.08998 * 113.65276 * 0.45235 * 21 20 19 36 36 H 1.08995 * 113.58631 * 270.38893 * 22 21 20 37 37 H 1.08998 * 113.58882 * 139.57136 * 22 21 20 38 38 H 1.09005 * 113.64550 * 359.55467 * 23 20 19 39 39 H 1.08995 * 113.64766 * 130.55559 * 23 20 19 40 40 H 1.09000 * 109.59194 * 173.14578 * 24 14 13 41 41 H 1.09004 * 109.59115 * 293.57214 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6255 -2.5580 0.8902 11 6 0.3705 -2.5806 -1.2496 12 6 -0.4205 -3.8907 -1.2336 13 6 0.5551 -5.0717 -1.2519 14 7 1.4987 -4.9229 -0.1356 15 6 1.6757 -5.9218 0.7518 16 8 2.4579 -5.7869 1.6688 17 6 0.8973 -7.2041 0.6080 18 1 -0.1129 -7.0991 0.2122 19 6 1.6774 -8.4669 0.2321 20 6 1.1369 -8.2938 1.6471 21 6 0.1053 -9.1517 2.3877 22 6 1.2396 -9.5294 3.3569 23 6 1.9161 -8.2043 2.9637 24 6 2.2414 -3.6623 -0.0016 25 1 -0.4850 0.8400 -0.0004 26 1 0.9988 -2.5465 -2.1396 27 1 -0.3216 -1.7387 -1.2614 28 1 -1.0647 -3.9374 -2.1115 29 1 -1.0303 -3.9365 -0.3313 30 1 1.1024 -5.0791 -2.1944 31 1 0.0037 -6.0056 -1.1422 32 1 1.1806 -9.1928 -0.4114 33 1 2.7536 -8.3697 0.0884 34 1 -0.6923 -8.5723 2.8527 35 1 -0.2666 -9.9919 1.8013 36 1 1.7993 -10.4128 3.0500 37 1 0.9272 -9.5668 4.4004 38 1 2.9960 -8.2850 2.8390 39 1 1.6226 -7.3612 3.5890 40 1 2.8005 -3.6652 0.9341 41 1 2.9291 -3.5523 -0.8402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:43 Heat of formation + Delta-G solvation = -13.025300 kcal Electronic energy + Delta-G solvation = -20327.252055 eV Core-core repulsion = 17400.439608 eV Total energy + Delta-G solvation = -2926.812447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50388 -39.82998 -38.15535 -35.41679 -34.56115 -32.97763 -31.99518 -27.37980 -26.61963 -26.49284 -24.35147 -23.89078 -23.28319 -21.29950 -19.88539 -19.06998 -18.59012 -18.03098 -16.89466 -16.64834 -16.15538 -16.05220 -15.56409 -15.19083 -15.08626 -14.66043 -14.46432 -13.86537 -13.61603 -13.52696 -13.19627 -12.98249 -12.89731 -12.71479 -12.58872 -12.40787 -12.30964 -11.92991 -11.87354 -11.62017 -11.30441 -11.20015 -10.99039 -10.86254 -10.64998 -10.52808 -10.43027 -9.47591 -8.12936 -6.28572 1.38223 1.40212 1.51629 1.55997 2.09838 2.42054 2.80338 3.13382 3.35562 3.70544 3.74451 3.90155 3.97257 4.00766 4.16889 4.25250 4.34946 4.50051 4.53459 4.61881 4.67794 4.78796 4.84053 4.86008 4.87207 4.91598 4.97179 5.05630 5.11160 5.11421 5.18573 5.27509 5.42243 5.47563 5.54643 5.56467 5.59218 5.90501 6.11637 6.32224 6.59710 6.81057 7.26873 7.39839 8.91006 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034006 B = 0.004518 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.182783 B = 6195.310764 C = 6546.558571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.041 3.959 10 H -0.017 1.017 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.111 3.889 14 N -0.606 5.606 15 C 0.528 3.472 16 O -0.591 6.591 17 C -0.189 4.189 18 H 0.146 0.854 19 C -0.098 4.098 20 C -0.139 4.139 21 C -0.087 4.087 22 C -0.128 4.128 23 C -0.098 4.098 24 C 0.131 3.869 25 H 0.262 0.738 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -19.337 -2.345 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.022 3.978 10 H 0.001 0.999 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.010 4.010 14 N -0.337 5.337 15 C 0.318 3.682 16 O -0.472 6.472 17 C -0.210 4.210 18 H 0.163 0.837 19 C -0.135 4.135 20 C -0.140 4.140 21 C -0.124 4.124 22 C -0.166 4.166 23 C -0.136 4.136 24 C 0.008 3.992 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.161 0.839 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.001 -19.138 -1.885 19.335 hybrid contribution 0.532 1.887 0.276 1.980 sum -1.469 -17.251 -1.609 17.388 Atomic orbital electron populations 1.70013 1.07117 1.27198 1.50896 1.25697 0.95708 1.02310 0.94468 0.85532 0.78991 0.79531 0.77763 1.19363 1.19954 1.20811 1.21465 0.93035 0.91941 1.51316 0.93067 1.18796 0.93205 0.91701 0.94099 0.99909 1.21421 0.98759 0.97152 0.97041 1.21924 0.97857 0.95014 1.01804 1.21988 0.90638 0.99665 0.88738 1.48321 1.42481 1.14594 1.28291 1.20448 0.82012 0.85141 0.80590 1.90619 1.39967 1.82402 1.34256 1.22203 1.01676 0.87591 1.09500 0.83693 1.22887 0.99670 0.95422 0.95509 1.22530 1.01876 0.98760 0.90820 1.22477 0.95260 0.98152 0.96485 1.22791 0.97387 0.96591 0.99799 1.22309 0.98547 0.97925 0.94813 1.21427 0.94585 0.83021 1.00121 0.92884 0.94376 0.91908 0.89068 0.93894 0.90159 0.86820 0.83937 0.89368 0.89874 0.88678 0.88652 0.90581 0.93109 0.92359 0.93243 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.00 11.31 21.45 0.24 -52.76 16 2 C 0.02 0.97 5.30 84.66 0.45 1.42 16 3 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.54 -30.66 8.57 25.60 0.22 -30.44 16 8 H 0.05 2.89 7.75 -2.91 -0.02 2.87 16 9 C 0.04 2.15 2.24 -11.61 -0.03 2.12 16 10 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 11 C -0.11 -4.85 4.96 30.62 0.15 -4.69 16 12 C -0.13 -4.41 6.08 30.67 0.19 -4.22 16 13 C 0.11 3.22 6.35 86.36 0.55 3.77 16 14 N -0.61 -22.93 2.98 -819.73 -2.44 -25.37 16 15 C 0.53 19.68 7.48 87.66 0.66 20.34 16 16 O -0.59 -26.89 14.55 -3.04 -0.04 -26.93 16 17 C -0.19 -4.85 5.13 -11.68 -0.06 -4.91 16 18 H 0.15 3.00 6.56 -2.39 -0.02 2.99 16 19 C -0.10 -1.91 10.23 30.46 0.31 -1.60 16 20 C -0.14 -3.21 2.87 -52.37 -0.15 -3.36 16 21 C -0.09 -1.47 8.10 30.98 0.25 -1.22 16 22 C -0.13 -2.28 8.08 31.19 0.25 -2.03 16 23 C -0.10 -2.62 6.47 30.98 0.20 -2.42 16 24 C 0.13 6.04 5.63 86.22 0.49 6.52 16 25 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 3.30 6.04 -2.39 -0.01 3.29 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.11 2.40 5.51 -2.39 -0.01 2.39 16 32 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.06 1.86 8.05 -2.39 -0.02 1.84 16 40 H 0.05 2.52 7.01 -2.39 -0.02 2.50 16 41 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -69.86 322.26 4.25 -65.61 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 1.00 Total: 13.89 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 3.48 Total: -20.73 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -2.20 Total: -78.13 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.04 Total: -26.93 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -69.86 4.25 -65.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.584 kcal (2) G-P(sol) polarization free energy of solvation -69.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds