Wall clock time and date at job start Mon Mar 30 2020 00:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32615 * 124.62628 * 2 1 4 4 C 1.47101 * 124.61304 * 359.97438 * 3 2 1 5 5 O 1.21615 * 120.00405 * 8.58139 * 4 3 2 6 6 N 1.34779 * 119.99496 * 188.85511 * 4 3 2 7 7 C 1.46927 * 120.63132 * 7.79220 * 6 4 3 8 8 C 1.53626 * 108.54356 * 126.36730 * 7 6 4 9 9 C 1.53043 * 109.24109 * 54.85808 * 8 7 6 10 10 C 1.53047 * 109.53597 * 298.51009 * 9 8 7 11 11 H 1.08998 * 109.49808 * 301.41319 * 10 9 8 12 12 C 1.50694 * 109.52120 * 181.33383 * 10 9 8 13 13 H 1.08004 * 120.00524 * 0.14659 * 12 10 9 14 14 C 1.37887 * 119.99810 * 180.14696 * 12 10 9 15 15 N 1.31506 * 119.99861 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99958 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47112 * 59.99837 * 16 14 12 18 18 H 1.48497 * 109.46894 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46912 * 300.00277 * 16 14 12 20 20 C 1.46922 * 120.62998 * 188.07121 * 6 4 3 21 21 C 1.51109 * 110.76239 * 180.26167 * 3 2 1 22 22 C 1.54761 * 104.74959 * 343.00021 * 21 3 2 23 23 C 1.51120 * 124.61712 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46783 * 90.00503 * 1 2 3 25 25 H 1.08996 * 109.47472 * 210.00476 * 1 2 3 26 26 H 1.08999 * 109.47110 * 330.00520 * 1 2 3 27 27 H 1.08996 * 109.58646 * 246.20156 * 7 6 4 28 28 H 1.09000 * 109.58746 * 6.62641 * 7 6 4 29 29 H 1.08994 * 109.63367 * 294.86829 * 8 7 6 30 30 H 1.09000 * 109.46109 * 174.73900 * 8 7 6 31 31 H 1.08998 * 109.46335 * 178.49417 * 9 8 7 32 32 H 1.08997 * 109.44751 * 58.52136 * 9 8 7 33 33 H 0.97003 * 119.99876 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.58663 * 353.37514 * 20 6 4 35 35 H 1.08999 * 109.58770 * 113.65841 * 20 6 4 36 36 H 1.08997 * 110.36362 * 101.97301 * 21 3 2 37 37 H 1.08995 * 110.36588 * 224.29791 * 21 3 2 38 38 H 1.08991 * 111.21866 * 267.22350 * 22 21 3 39 39 H 1.09001 * 110.86117 * 143.37837 * 22 21 3 40 40 H 1.09003 * 110.36798 * 315.44142 * 23 2 1 41 41 H 1.09004 * 110.36447 * 77.65624 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.0913 0.0000 4 6 1.7391 2.4668 -0.0005 5 8 0.5497 2.6663 0.1561 6 7 2.5788 3.5056 -0.1802 7 6 3.9837 3.2781 -0.5452 8 6 4.2981 4.0925 -1.8093 9 6 3.9425 5.5608 -1.5647 10 6 2.4449 5.6830 -1.2735 11 1 1.8771 5.2864 -2.1151 12 6 2.0891 7.1324 -1.0651 13 1 2.8539 7.8919 -1.1357 14 6 0.7872 7.4892 -0.7841 15 7 -0.1441 6.5646 -0.6986 16 14 0.3462 9.2859 -0.5251 17 1 0.6732 10.0575 -1.7509 18 1 -1.1064 9.4028 -0.2398 19 1 1.1214 9.8255 0.6209 20 6 2.1082 4.8868 -0.0088 21 6 3.7276 0.7292 -0.0065 22 6 3.7688 -0.7559 0.4271 23 6 2.3654 -1.2437 0.0006 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 4.6301 3.6009 0.2709 28 1 4.1429 2.2180 -0.7428 29 1 3.7127 3.7109 -2.6458 30 1 5.3601 4.0090 -2.0403 31 1 4.1891 6.1466 -2.4502 32 1 4.5099 5.9345 -0.7124 33 1 -1.0599 6.8156 -0.5007 34 1 1.0295 4.8885 0.1477 35 1 2.6029 5.3373 0.8517 36 1 4.1428 0.8467 -1.0073 37 1 4.2737 1.3465 0.7067 38 1 3.9031 -0.8486 1.5047 39 1 4.5493 -1.2953 -0.1094 40 1 1.9817 -1.9692 0.7179 41 1 2.4011 -1.6804 -0.9975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:44 Heat of formation + Delta-G solvation = -14.366496 kcal Electronic energy + Delta-G solvation = -20756.472410 eV Core-core repulsion = 17829.601804 eV Total energy + Delta-G solvation = -2926.870606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04497 -37.80744 -36.49995 -33.44449 -31.80241 -31.04423 -30.12060 -28.58550 -25.99037 -24.92404 -24.42948 -21.96962 -21.10891 -20.54242 -18.80776 -17.37096 -16.33210 -15.80794 -15.49606 -15.15416 -14.51667 -14.21004 -14.00504 -13.56838 -13.20457 -12.95254 -12.80840 -12.63069 -12.36152 -12.23634 -12.00905 -11.85025 -11.48371 -11.37756 -11.21858 -10.99693 -10.92499 -10.65238 -10.44928 -10.19740 -9.98608 -9.72643 -9.12458 -9.04498 -8.75181 -8.53161 -8.37313 -7.59050 -5.94835 -4.04102 1.70626 3.34157 3.39954 3.41367 3.82416 3.93864 4.46000 4.52038 4.59903 4.90973 5.07775 5.19880 5.34463 5.43622 5.53754 5.57124 5.59706 5.66381 5.75738 5.78382 5.83191 5.92904 5.99339 6.07192 6.12610 6.22823 6.27564 6.38742 6.65828 6.71734 6.77559 6.81681 6.93333 7.03930 7.24667 7.41246 7.70169 7.93730 8.06269 8.38860 8.44807 8.97725 9.04055 9.61110 11.10085 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.005660 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.523605 B = 4945.373271 C = 5729.548440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.059 4.059 3 C -0.194 4.194 4 C 0.554 3.446 5 O -0.536 6.536 6 N -0.600 5.600 7 C 0.069 3.931 8 C -0.133 4.133 9 C -0.111 4.111 10 C 0.041 3.959 11 H 0.028 0.972 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.879 5.879 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.113 3.887 21 C -0.089 4.089 22 C -0.126 4.126 23 C -0.097 4.097 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.263 0.737 34 H 0.122 0.878 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.476 -14.609 1.183 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.061 4.061 3 C -0.197 4.197 4 C 0.343 3.657 5 O -0.415 6.415 6 N -0.331 5.331 7 C -0.053 4.053 8 C -0.172 4.172 9 C -0.148 4.148 10 C 0.022 3.978 11 H 0.046 0.954 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.517 5.517 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.008 4.008 21 C -0.126 4.126 22 C -0.164 4.164 23 C -0.134 4.134 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.125 0.875 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.650 -14.489 1.310 16.436 hybrid contribution -0.126 1.118 0.084 1.128 sum 7.524 -13.371 1.395 15.406 Atomic orbital electron populations 1.20863 0.90273 1.03884 1.02816 1.22684 0.96082 0.93923 0.93429 1.21802 0.95912 0.93611 1.08363 1.17932 0.85982 0.84114 0.77637 1.90724 1.15099 1.85098 1.50556 1.48327 1.09638 1.08022 1.67159 1.22808 0.83129 1.02520 0.96888 1.22020 0.99709 0.98029 0.97413 1.21627 0.99951 0.93102 1.00162 1.18943 0.89789 0.95192 0.93894 0.95396 1.21052 0.93812 0.91727 1.49473 0.92499 1.25057 0.96554 0.97296 0.95107 1.69891 1.01741 1.32272 1.47780 0.86665 0.77324 0.85428 0.78623 1.20308 1.21268 1.20273 1.22243 1.03750 0.76175 0.98583 1.21579 0.93762 0.95801 1.01414 1.22530 0.96567 0.95853 1.01428 1.21378 0.94191 0.95891 1.01958 0.91105 0.92416 0.88158 0.92568 0.87475 0.92310 0.92457 0.93204 0.93320 0.92644 0.86007 0.94226 0.89526 0.90259 0.90943 0.90762 0.90743 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.74 36.00 0.35 -1.43 16 2 C -0.06 -0.84 6.23 -101.05 -0.63 -1.47 16 3 C -0.19 -3.11 5.93 -102.73 -0.61 -3.72 16 4 C 0.55 11.73 7.63 -12.66 -0.10 11.63 16 5 O -0.54 -13.36 13.57 5.26 0.07 -13.29 16 6 N -0.60 -12.60 2.97 -173.90 -0.52 -13.11 16 7 C 0.07 1.13 5.21 -3.48 -0.02 1.11 16 8 C -0.13 -2.25 6.10 -26.38 -0.16 -2.41 16 9 C -0.11 -2.28 5.11 -26.68 -0.14 -2.42 16 10 C 0.04 1.04 2.25 -91.65 -0.21 0.84 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.52 -14.46 8.57 -34.44 -0.29 -14.76 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 15 N -0.88 -26.16 11.39 55.43 0.63 -25.53 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.11 2.82 5.41 -3.71 -0.02 2.80 16 21 C -0.09 -1.05 4.39 -26.76 -0.12 -1.17 16 22 C -0.13 -1.18 7.17 -24.98 -0.18 -1.36 16 23 C -0.10 -0.99 6.75 -26.85 -0.18 -1.17 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.10 1.80 5.81 -51.93 -0.30 1.50 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.11 1.45 2.47 -70.20 -0.17 1.27 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.12 3.54 5.12 -51.93 -0.27 3.28 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.93 6.68 -51.93 -0.35 0.58 16 37 H 0.08 0.91 6.90 -51.93 -0.36 0.56 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 313.44 15.07 4.72 4.72 Total: -1.00 -31.71 313.44 -8.99 -40.70 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.48 Total: 1.80 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.39 Total: -11.85 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.12 Total: -38.65 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.07 Total: -13.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.71 -8.99 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.336 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds