Wall clock time and date at job start Mon Mar 30 2020 00:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.32614 * 124.62178 * 2 1 4 4 C 1.47104 * 124.61708 * 359.92403 * 3 2 1 5 5 O 1.21614 * 120.00165 * 336.29014 * 4 3 2 6 6 N 1.34778 * 120.00019 * 156.29737 * 4 3 2 7 7 C 1.46930 * 120.62925 * 5.93870 * 6 4 3 8 8 C 1.52765 * 109.00333 * 233.58495 * 7 6 4 9 9 C 1.53037 * 109.38506 * 305.58416 * 8 7 6 10 10 C 1.53044 * 109.53744 * 61.24140 * 9 8 7 11 11 H 1.09000 * 109.49428 * 58.58569 * 10 9 8 12 12 C 1.50695 * 109.49706 * 178.67960 * 10 9 8 13 13 H 1.08000 * 120.00472 * 359.84722 * 12 10 9 14 14 C 1.37880 * 119.99996 * 179.83836 * 12 10 9 15 15 N 1.31524 * 119.99764 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00256 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47166 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47352 * 120.00112 * 16 14 12 19 19 H 1.48500 * 109.47202 * 240.00102 * 16 14 12 20 20 C 1.46922 * 120.63423 * 186.21666 * 6 4 3 21 21 C 1.51106 * 110.76124 * 179.97438 * 3 2 1 22 22 C 1.54575 * 104.84106 * 16.60023 * 21 3 2 23 23 C 1.51115 * 124.62149 * 179.69044 * 2 1 3 24 24 H 1.09003 * 109.47033 * 90.00536 * 1 2 3 25 25 H 1.08999 * 109.47848 * 330.00610 * 1 2 3 26 26 H 1.09000 * 109.47256 * 210.00355 * 1 2 3 27 27 H 1.09001 * 109.58479 * 353.41878 * 7 6 4 28 28 H 1.09000 * 109.58845 * 113.84629 * 7 6 4 29 29 H 1.09003 * 109.55949 * 185.54974 * 8 7 6 30 30 H 1.08996 * 109.38965 * 65.51830 * 8 7 6 31 31 H 1.09001 * 109.46072 * 301.22797 * 9 8 7 32 32 H 1.08995 * 109.44987 * 181.25834 * 9 8 7 33 33 H 0.97000 * 119.99571 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.58972 * 246.15829 * 20 6 4 35 35 H 1.09009 * 109.58553 * 6.57834 * 20 6 4 36 36 H 1.09003 * 110.36849 * 135.43746 * 21 3 2 37 37 H 1.08994 * 110.37136 * 257.64556 * 21 3 2 38 38 H 1.08993 * 110.98544 * 93.07084 * 22 21 3 39 39 H 1.09002 * 110.98034 * 216.83498 * 22 21 3 40 40 H 1.09000 * 110.36778 * 282.28107 * 23 2 1 41 41 H 1.08992 * 110.36604 * 44.60339 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.0913 0.0000 4 6 1.7389 2.4668 -0.0016 5 8 0.6221 2.6933 -0.4265 6 7 2.4989 3.4762 0.4677 7 6 3.8944 3.2413 0.8630 8 6 4.0992 3.7473 2.2897 9 6 3.6583 5.2102 2.3780 10 6 2.1709 5.3181 2.0342 11 1 1.5928 4.7015 2.7226 12 6 1.7301 6.7542 2.1530 13 1 2.4390 7.5142 2.4468 14 6 0.4218 7.0981 1.8862 15 7 -0.4416 6.1726 1.5286 16 14 -0.1244 8.8784 2.0327 17 1 1.0283 9.7173 2.4482 18 1 -0.6325 9.3500 0.7194 19 1 -1.2035 8.9832 3.0474 20 6 1.9459 4.8309 0.5994 21 6 3.7274 0.7293 0.0006 22 6 3.7690 -0.7559 -0.4259 23 6 2.3655 -1.2435 0.0067 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3635 0.8900 0.5137 26 1 -0.3634 -0.8899 0.5139 27 1 4.1114 2.1739 0.8206 28 1 4.5607 3.7788 0.1884 29 1 5.1529 3.6681 2.5573 30 1 3.5034 3.1457 2.9761 31 1 4.2379 5.8072 1.6739 32 1 3.8248 5.5789 3.3901 33 1 -1.3620 6.4146 1.3413 34 1 2.4501 5.5008 -0.0972 35 1 0.8776 4.8122 0.3832 36 1 4.2704 1.3451 -0.7164 37 1 4.1478 0.8509 0.9989 38 1 3.9037 -0.8489 -1.5034 39 1 4.5498 -1.2944 0.1111 40 1 2.4021 -1.6738 1.0075 41 1 1.9823 -1.9729 -0.7068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:46 Heat of formation + Delta-G solvation = -35.431440 kcal Electronic energy + Delta-G solvation = -20784.186165 eV Core-core repulsion = 17856.402115 eV Total energy + Delta-G solvation = -2927.784051 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.45418 -39.12529 -38.16223 -35.37373 -33.51628 -32.29146 -31.75438 -29.87909 -27.22936 -26.87839 -25.91046 -23.52751 -22.45461 -21.85394 -20.43942 -18.89440 -18.23523 -17.19044 -16.83971 -16.59277 -16.43898 -15.63759 -15.55345 -15.02167 -14.64170 -14.58044 -14.23434 -14.05565 -13.81926 -13.58154 -13.41302 -13.26343 -12.92965 -12.75322 -12.50735 -12.32881 -12.31486 -12.18904 -12.02418 -11.84893 -11.68484 -11.25708 -11.06449 -10.92871 -10.59161 -10.42490 -9.73000 -9.26068 -8.14273 -6.31963 0.50801 1.37190 1.38274 1.51013 2.16791 2.37827 2.44597 3.14031 3.51050 3.65504 3.94003 4.06277 4.17259 4.23143 4.25674 4.34411 4.49958 4.59022 4.65724 4.69707 4.78988 4.82431 4.84444 4.90336 4.97702 5.00858 5.07536 5.10496 5.23204 5.24799 5.28408 5.33981 5.41412 5.51826 5.54931 5.64813 5.71643 5.86715 5.96873 6.30279 6.74989 6.81483 7.36177 7.40053 8.89608 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.005733 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.570264 B = 4882.753005 C = 5627.681003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.055 4.055 3 C -0.223 4.223 4 C 0.540 3.460 5 O -0.597 6.597 6 N -0.605 5.605 7 C 0.058 3.942 8 C -0.126 4.126 9 C -0.106 4.106 10 C 0.039 3.961 11 H -0.016 1.016 12 C -0.536 4.536 13 H 0.063 0.937 14 C 0.007 3.993 15 N -0.918 5.918 16 Si 0.961 3.039 17 H -0.259 1.259 18 H -0.283 1.283 19 H -0.281 1.281 20 C 0.126 3.874 21 C -0.088 4.088 22 C -0.114 4.114 23 C -0.090 4.090 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.149 0.851 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.259 0.741 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.218 -15.953 -1.964 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.057 4.057 3 C -0.226 4.226 4 C 0.331 3.669 5 O -0.480 6.480 6 N -0.336 5.336 7 C -0.063 4.063 8 C -0.164 4.164 9 C -0.144 4.144 10 C 0.020 3.980 11 H 0.002 0.998 12 C -0.574 4.574 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.557 5.557 16 Si 0.786 3.214 17 H -0.183 1.183 18 H -0.209 1.209 19 H -0.207 1.207 20 C 0.004 3.996 21 C -0.124 4.124 22 C -0.151 4.151 23 C -0.127 4.127 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.110 0.890 27 H 0.165 0.835 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.502 -15.823 -2.226 19.688 hybrid contribution -1.307 1.741 0.052 2.178 sum 10.195 -14.081 -2.175 17.520 Atomic orbital electron populations 1.20646 0.91579 1.02157 1.02535 1.23160 0.95776 0.95845 0.90892 1.21789 0.99223 0.90561 1.10996 1.18904 0.84366 0.86256 0.77325 1.90721 1.22269 1.85416 1.49569 1.48389 1.13711 1.09240 1.62216 1.23130 0.80584 1.06569 0.95987 1.21842 1.02472 0.95702 0.96403 1.21525 0.95876 0.96533 1.00450 1.18897 0.93042 0.94682 0.91401 0.99815 1.21566 0.95245 0.94194 1.46434 0.91890 1.25953 0.96983 1.01693 0.94565 1.70116 1.04128 1.34586 1.46850 0.85457 0.78448 0.79905 0.77581 1.18255 1.20854 1.20663 1.21652 0.99728 0.79813 0.98440 1.21551 0.90075 0.98140 1.02658 1.22531 0.96748 0.93434 1.02359 1.21495 0.93640 0.93738 1.03807 0.90795 0.94466 0.88993 0.83455 0.91093 0.87567 0.93290 0.92677 0.92931 0.93161 0.95211 0.90866 0.90016 0.87550 0.90254 0.87452 0.87965 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.38 9.44 71.23 0.67 -2.71 16 2 C -0.05 -1.50 6.22 -17.48 -0.11 -1.61 16 3 C -0.22 -7.03 5.84 -18.57 -0.11 -7.14 16 4 C 0.54 24.11 7.43 86.57 0.64 24.75 16 5 O -0.60 -32.59 14.31 -4.08 -0.06 -32.65 16 6 N -0.61 -26.40 2.98 -823.99 -2.45 -28.86 16 7 C 0.06 1.78 5.73 86.22 0.49 2.27 16 8 C -0.13 -3.93 6.06 30.53 0.19 -3.75 16 9 C -0.11 -4.31 5.11 30.62 0.16 -4.15 16 10 C 0.04 2.07 2.25 -11.46 -0.03 2.05 16 11 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 12 C -0.54 -30.69 8.56 25.60 0.22 -30.47 16 13 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 14 C 0.01 0.41 5.30 84.65 0.45 0.86 16 15 N -0.92 -57.94 11.39 21.45 0.24 -57.70 16 16 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 C 0.13 6.76 5.38 86.36 0.47 7.22 16 21 C -0.09 -1.75 4.44 30.51 0.14 -1.62 16 22 C -0.11 -1.51 7.17 31.73 0.23 -1.28 16 23 C -0.09 -1.44 6.76 30.58 0.21 -1.23 16 24 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.04 1.46 6.69 -2.39 -0.02 1.44 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.15 3.48 2.05 -21.52 -0.04 3.43 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 4.66 5.16 -2.38 -0.01 4.65 16 36 H 0.08 1.56 7.47 -2.39 -0.02 1.54 16 37 H 0.11 1.77 6.47 -2.39 -0.02 1.75 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.18 314.98 4.34 -73.84 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.97 Total: 14.56 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 3.61 Total: -16.80 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.21 Total: -86.55 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.06 Total: -32.65 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.18 4.34 -73.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.407 kcal (2) G-P(sol) polarization free energy of solvation -78.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds