Wall clock time and date at job start Mon Mar 30 2020 00:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99613 * 2 1 4 4 H 1.48496 * 109.46947 * 269.99785 * 3 2 1 5 5 H 1.48499 * 109.47329 * 30.00165 * 3 2 1 6 6 H 1.48503 * 109.46975 * 150.00228 * 3 2 1 7 7 C 1.37872 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99835 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00262 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.49695 * 60.06147 * 9 7 2 11 11 C 1.53037 * 109.49432 * 299.99855 * 9 7 2 12 12 C 1.53047 * 109.54060 * 178.64626 * 11 9 7 13 13 C 1.53198 * 109.30504 * 61.36438 * 12 11 9 14 14 N 1.46920 * 108.77794 * 305.36614 * 13 12 11 15 15 C 1.34779 * 120.62943 * 233.59010 * 14 13 12 16 16 O 1.21282 * 119.99927 * 180.02562 * 15 14 13 17 17 C 1.50699 * 120.00033 * 359.97438 * 15 14 13 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 14 19 19 H 1.08997 * 110.34369 * 54.30415 * 18 17 15 20 20 C 1.51100 * 110.38565 * 292.00753 * 18 17 15 21 21 C 1.30722 * 110.99072 * 224.83930 * 20 18 17 22 22 C 1.51100 * 111.13738 * 359.84673 * 21 20 18 23 23 C 1.54632 * 104.72775 * 16.53277 * 22 21 20 24 24 C 1.46927 * 118.74133 * 53.86349 * 14 13 12 25 25 H 0.97004 * 120.00210 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46369 * 58.63124 * 11 9 7 27 27 H 1.08996 * 109.45369 * 298.66405 * 11 9 7 28 28 H 1.08999 * 109.49864 * 301.41752 * 12 11 9 29 29 H 1.08999 * 109.52707 * 181.33018 * 12 11 9 30 30 H 1.09000 * 109.58132 * 185.58166 * 13 12 11 31 31 H 1.08997 * 109.58854 * 65.15533 * 13 12 11 32 32 H 1.08993 * 109.47512 * 60.00410 * 17 15 14 33 33 H 1.09000 * 109.47247 * 300.00119 * 17 15 14 34 34 H 1.08001 * 124.44441 * 44.73628 * 20 18 17 35 35 H 1.07995 * 124.41283 * 179.97438 * 21 20 18 36 36 H 1.08999 * 110.38824 * 257.72235 * 22 21 20 37 37 H 1.09004 * 110.48299 * 135.39532 * 22 21 20 38 38 H 1.08993 * 111.04067 * 217.33433 * 23 22 21 39 39 H 1.09003 * 111.06798 * 93.40886 * 23 22 21 40 40 H 1.09000 * 109.58399 * 65.92043 * 24 14 13 41 41 H 1.09001 * 109.58955 * 186.35290 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8750 -0.6818 0.8909 11 6 4.0227 -0.4719 -1.2487 12 6 5.5528 -0.4418 -1.2322 13 6 6.0879 -1.8771 -1.2505 14 7 5.4869 -2.6202 -0.1346 15 6 6.2632 -3.2737 0.7524 16 8 5.7549 -3.8839 1.6691 17 6 7.7627 -3.2470 0.6046 18 6 8.4008 -4.0609 1.7323 19 1 7.9829 -5.0673 1.7565 20 6 8.1929 -3.3723 3.0611 21 6 9.2956 -3.3667 3.7632 22 6 10.4180 -4.0533 3.0203 23 6 9.9356 -4.1191 1.5526 24 6 4.0233 -2.6425 -0.0076 25 1 -0.4850 0.8401 0.0004 26 1 3.6397 0.5485 -1.2605 27 1 3.6795 -0.9989 -2.1388 28 1 5.8971 0.0633 -0.3297 29 1 5.9161 0.0932 -2.1096 30 1 7.1721 -1.8643 -1.1391 31 1 5.8210 -2.3546 -2.1933 32 1 8.1146 -2.2167 0.6557 33 1 8.0408 -3.6787 -0.3568 34 1 7.2576 -2.9408 3.3858 35 1 9.3909 -2.9303 4.7464 36 1 10.5751 -5.0577 3.4137 37 1 11.3360 -3.4701 3.0925 38 1 10.2393 -5.0543 1.0824 39 1 10.2956 -3.2623 0.9831 40 1 3.5915 -3.1810 -0.8511 41 1 3.7448 -3.1348 0.9242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597916736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:29 Heat of formation + Delta-G solvation = -27.796064 kcal Electronic energy + Delta-G solvation = -20309.612140 eV Core-core repulsion = 17382.159185 eV Total energy + Delta-G solvation = -2927.452956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.05094 -38.49893 -36.85298 -33.55367 -31.89079 -31.50623 -30.38375 -28.97045 -26.26302 -25.02654 -24.09672 -21.68315 -20.69671 -19.98139 -18.78382 -18.31351 -16.92880 -16.65999 -15.96791 -15.63009 -15.02100 -14.89674 -14.43366 -13.80406 -13.53121 -13.18805 -13.05053 -12.52885 -12.44978 -12.27569 -11.95891 -11.90307 -11.88890 -11.40541 -11.30443 -11.22105 -11.13192 -10.81257 -10.64266 -10.32144 -10.16006 -9.84164 -9.54261 -9.26731 -9.00545 -8.88899 -8.57493 -8.06133 -6.10510 -4.10521 2.30927 2.99202 3.22684 3.34994 3.37112 3.43678 4.37508 4.48865 4.54822 4.76768 4.91056 5.09673 5.17249 5.21005 5.32260 5.33906 5.41788 5.47166 5.55105 5.57688 5.68751 5.77461 5.84669 5.88697 5.97647 6.05573 6.11948 6.19275 6.23327 6.36111 6.52367 6.59291 6.68731 6.73054 6.87212 6.91889 7.13271 7.45732 7.72019 7.88037 8.46180 8.58134 8.92882 9.51122 11.02561 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.004691 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.083778 B = 5967.569465 C = 6055.018820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.006 3.994 10 H 0.030 0.970 11 C -0.122 4.122 12 C -0.140 4.140 13 C 0.111 3.889 14 N -0.610 5.610 15 C 0.508 3.492 16 O -0.545 6.545 17 C -0.132 4.132 18 C -0.054 4.054 19 H 0.090 0.910 20 C -0.134 4.134 21 C -0.190 4.190 22 C -0.097 4.097 23 C -0.122 4.122 24 C 0.127 3.873 25 H 0.264 0.736 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.707 -4.565 -0.821 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.178 4.178 13 C -0.012 4.012 14 N -0.343 5.343 15 C 0.296 3.704 16 O -0.423 6.423 17 C -0.172 4.172 18 C -0.073 4.073 19 H 0.108 0.892 20 C -0.152 4.152 21 C -0.208 4.208 22 C -0.134 4.134 23 C -0.160 4.160 24 C 0.006 3.994 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 20.264 -4.792 -0.344 20.825 hybrid contribution 0.218 1.179 -0.135 1.207 sum 20.482 -3.612 -0.479 20.803 Atomic orbital electron populations 1.69895 1.06266 1.26989 1.50536 1.24981 0.94678 0.98993 0.94368 0.86825 0.79923 0.83582 0.77761 1.20584 1.22507 1.19157 1.20922 0.88370 0.94722 1.51274 0.90615 1.19537 0.96805 0.91461 0.93588 0.95235 1.21985 0.92005 1.00689 1.01291 1.22009 0.98728 0.95518 1.01520 1.21679 0.97223 0.92611 0.89697 1.48369 1.08361 1.50195 1.27374 1.20575 0.89142 0.78882 0.81764 1.90671 1.75579 1.43635 1.32409 1.21738 0.92738 1.02378 1.00319 1.20834 0.94402 0.99577 0.92480 0.89239 1.23424 0.98308 0.97856 0.95604 1.23261 0.95545 1.01968 1.00034 1.21303 0.97553 1.00133 0.94397 1.22560 0.94654 1.02072 0.96693 1.21840 0.75943 0.99293 1.02324 0.92596 0.93249 0.91941 0.92151 0.91765 0.90626 0.91518 0.89073 0.89128 0.85515 0.86192 0.91074 0.91559 0.90968 0.90990 0.92067 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 21.81 24.38 -169.99 -4.15 17.67 16 4 H -0.28 -6.57 6.86 56.52 0.39 -6.18 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 7 C -0.51 -14.30 9.15 -34.44 -0.32 -14.62 16 8 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 9 C 0.01 0.13 1.85 -91.43 -0.17 -0.04 16 10 H 0.03 0.73 7.21 -51.93 -0.37 0.36 16 11 C -0.12 -2.48 4.65 -26.69 -0.12 -2.61 16 12 C -0.14 -2.18 6.08 -26.60 -0.16 -2.34 16 13 C 0.11 1.51 6.34 -3.71 -0.02 1.49 16 14 N -0.61 -10.42 2.97 -172.50 -0.51 -10.94 16 15 C 0.51 8.45 7.48 -10.99 -0.08 8.37 16 16 O -0.54 -11.00 14.21 5.56 0.08 -10.92 16 17 C -0.13 -1.55 3.45 -27.88 -0.10 -1.65 16 18 C -0.05 -0.64 2.52 -90.71 -0.23 -0.87 16 19 H 0.09 1.17 7.96 -51.93 -0.41 0.76 16 20 C -0.13 -1.76 9.24 -35.75 -0.33 -2.09 16 21 C -0.19 -2.11 10.78 -35.75 -0.39 -2.50 16 22 C -0.10 -0.88 6.81 -26.83 -0.18 -1.06 16 23 C -0.12 -1.09 6.71 -25.01 -0.17 -1.26 16 24 C 0.13 2.63 5.69 -3.49 -0.02 2.61 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.05 1.08 3.25 -51.93 -0.17 0.91 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.78 5.93 -51.93 -0.31 0.48 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.98 7.69 -51.93 -0.40 0.58 16 33 H 0.09 0.86 7.94 -51.93 -0.41 0.44 16 34 H 0.13 1.94 7.44 -52.49 -0.39 1.55 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.58 7.91 -51.93 -0.41 0.17 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.93 7.00 -51.93 -0.36 1.57 16 LS Contribution 314.04 15.07 4.73 4.73 Total: -1.00 -31.62 314.04 -8.10 -39.73 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.65 Total: 0.98 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.38 Total: -14.62 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.26 Total: -37.56 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.15 Total: 17.67 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.62 -8.10 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.929 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds