Wall clock time and date at job start Mon Mar 30 2020 00:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48496 * 109.47392 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47037 * 300.00697 * 3 2 1 6 6 H 1.48509 * 109.46773 * 60.00249 * 3 2 1 7 7 C 1.37884 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99456 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50103 * 300.06710 * 9 7 2 11 11 C 1.53036 * 109.50074 * 60.16848 * 9 7 2 12 12 C 1.53034 * 109.53774 * 181.31444 * 11 9 7 13 13 C 1.53619 * 109.24234 * 298.50491 * 12 11 9 14 14 N 1.46924 * 108.54041 * 54.85833 * 13 12 11 15 15 C 1.34776 * 120.62873 * 126.36949 * 14 13 12 16 16 O 1.21285 * 120.00139 * 179.72042 * 15 14 13 17 17 C 1.50702 * 120.00292 * 359.72103 * 15 14 13 18 18 C 1.53002 * 109.47393 * 180.02562 * 17 15 14 19 19 H 1.09004 * 110.33963 * 304.15765 * 18 17 15 20 20 C 1.51094 * 110.39011 * 66.44758 * 18 17 15 21 21 C 1.30525 * 111.10287 * 135.36224 * 20 18 17 22 22 C 1.51104 * 111.10650 * 0.02562 * 21 20 18 23 23 C 1.54637 * 104.82203 * 343.50481 * 22 21 20 24 24 C 1.46920 * 118.74200 * 306.09327 * 14 13 12 25 25 H 0.97000 * 119.99676 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.45476 * 301.33381 * 11 9 7 27 27 H 1.08997 * 109.46218 * 61.30230 * 11 9 7 28 28 H 1.08998 * 109.50353 * 58.58886 * 12 11 9 29 29 H 1.09001 * 109.49408 * 178.64824 * 12 11 9 30 30 H 1.08997 * 109.74221 * 295.11951 * 13 12 11 31 31 H 1.09000 * 109.66760 * 174.55038 * 13 12 11 32 32 H 1.09000 * 109.47554 * 59.99939 * 17 15 14 33 33 H 1.09006 * 109.46965 * 300.00133 * 17 15 14 34 34 H 1.07999 * 124.45034 * 315.38984 * 20 18 17 35 35 H 1.08001 * 124.45397 * 180.02562 * 21 20 18 36 36 H 1.09002 * 110.38900 * 102.37280 * 22 21 20 37 37 H 1.09000 * 110.38594 * 224.63979 * 22 21 20 38 38 H 1.08997 * 111.03562 * 142.72145 * 23 22 21 39 39 H 1.09006 * 111.03454 * 266.65732 * 23 22 21 40 40 H 1.09000 * 109.58774 * 173.64699 * 24 14 13 41 41 H 1.08999 * 109.58936 * 294.07648 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6236 -2.5570 0.8889 11 6 0.3736 -2.5824 -1.2516 12 6 -0.4168 -3.8928 -1.2361 13 6 0.5633 -5.0755 -1.2540 14 7 1.5000 -4.9230 -0.1324 15 6 1.6758 -5.9211 0.7560 16 8 2.4558 -5.7849 1.6748 17 6 0.9033 -7.2066 0.6079 18 6 1.2856 -8.1646 1.7379 19 1 2.3634 -8.3273 1.7484 20 6 0.8225 -7.6199 3.0690 21 6 0.2617 -8.5530 3.7891 22 6 0.2577 -9.8756 3.0585 23 6 0.5385 -9.5127 1.5818 24 6 2.2460 -3.6641 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 -0.3189 -1.7407 -1.2661 27 1 1.0040 -2.5493 -2.1402 28 1 -1.0290 -3.9378 -0.3354 29 1 -1.0594 -3.9404 -2.1153 30 1 1.1160 -5.0815 -2.1934 31 1 0.0127 -6.0099 -1.1457 32 1 1.1402 -7.6643 -0.3526 33 1 -0.1651 -6.9960 0.6564 34 1 0.9397 -6.5933 3.3833 35 1 -0.1461 -8.3999 4.7774 36 1 1.0425 -10.5256 3.4456 37 1 -0.7150 -10.3584 3.1525 38 1 1.1736 -10.2617 1.1088 39 1 -0.3909 -9.3834 1.0271 40 1 2.8059 -3.6669 0.9341 41 1 2.9331 -3.5572 -0.8404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597916737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:32 Heat of formation + Delta-G solvation = -35.958367 kcal Electronic energy + Delta-G solvation = -20214.127200 eV Core-core repulsion = 17286.320301 eV Total energy + Delta-G solvation = -2927.806900 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90702 -38.35696 -36.59654 -33.51141 -31.69472 -31.18510 -29.99341 -28.90392 -25.96793 -25.01152 -23.78284 -21.68209 -20.61490 -19.84834 -18.64928 -18.11945 -16.79200 -16.24386 -15.77478 -15.53841 -14.92743 -14.55375 -14.46281 -13.50203 -13.29946 -13.13608 -12.71169 -12.48990 -12.13834 -12.00056 -11.83837 -11.80860 -11.74341 -11.28623 -11.12269 -10.98901 -10.84663 -10.73881 -10.65825 -10.29085 -9.95714 -9.78676 -9.45428 -9.19904 -8.82740 -8.80468 -8.39045 -7.86110 -6.02351 -4.09292 2.39158 3.11625 3.28486 3.36689 3.40876 3.59519 4.42405 4.57277 4.62153 4.85045 5.02243 5.25504 5.26294 5.31852 5.42702 5.51587 5.54809 5.63357 5.66157 5.74268 5.79297 5.85413 5.92770 6.11398 6.20577 6.28069 6.33763 6.42126 6.49255 6.66609 6.68335 6.82251 6.98932 7.00542 7.17775 7.33991 7.69128 7.92357 8.05509 8.07779 8.37817 8.71015 8.94880 9.55695 11.03222 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033703 B = 0.004349 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.582578 B = 6437.442866 C = 6724.418182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.605 5.605 15 C 0.507 3.493 16 O -0.550 6.550 17 C -0.131 4.131 18 C -0.054 4.054 19 H 0.088 0.912 20 C -0.132 4.132 21 C -0.192 4.192 22 C -0.097 4.097 23 C -0.122 4.122 24 C 0.117 3.883 25 H 0.260 0.740 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 -16.737 -0.761 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.338 5.338 15 C 0.295 3.705 16 O -0.429 6.429 17 C -0.171 4.171 18 C -0.072 4.072 19 H 0.106 0.894 20 C -0.150 4.150 21 C -0.210 4.210 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.004 4.004 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.929 -16.537 -0.291 16.652 hybrid contribution 0.317 1.093 -0.086 1.142 sum -1.612 -15.444 -0.378 15.532 Atomic orbital electron populations 1.69886 1.05899 1.26344 1.50670 1.24941 0.94853 0.99090 0.94953 0.86528 0.80206 0.83683 0.77549 1.19723 1.21044 1.21019 1.21129 0.93033 0.90312 1.50722 0.92445 1.18973 0.92980 0.91226 0.94760 0.95320 1.21623 0.99447 0.95383 0.98571 1.22074 0.97608 0.96698 1.00910 1.21826 0.91446 0.99004 0.89161 1.48335 1.42374 1.16118 1.26929 1.20550 0.82932 0.85095 0.81899 1.90652 1.37990 1.81720 1.32518 1.21722 1.01255 0.94016 1.00126 1.20873 1.00765 0.93031 0.92567 0.89383 1.23387 0.96584 0.99557 0.95446 1.23204 1.02589 0.95181 1.00015 1.21303 1.01351 0.96285 0.94433 1.22611 1.00370 0.96397 0.96609 1.21972 0.95060 0.82031 1.01370 0.93050 0.88689 0.94617 0.92384 0.92548 0.91990 0.91109 0.89265 0.89068 0.85457 0.86211 0.91158 0.91608 0.91011 0.90964 0.90352 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.32 55.43 0.63 -24.38 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.51 4.96 -26.70 -0.13 -2.64 16 12 C -0.13 -2.37 6.10 -26.39 -0.16 -2.53 16 13 C 0.11 1.66 6.37 -3.49 -0.02 1.64 16 14 N -0.61 -11.15 2.97 -172.51 -0.51 -11.66 16 15 C 0.51 9.01 7.46 -10.98 -0.08 8.92 16 16 O -0.55 -11.61 14.10 5.55 0.08 -11.54 16 17 C -0.13 -1.69 3.48 -27.88 -0.10 -1.78 16 18 C -0.05 -0.68 2.54 -90.57 -0.23 -0.91 16 19 H 0.09 1.21 8.01 -51.93 -0.42 0.79 16 20 C -0.13 -1.84 9.19 -35.70 -0.33 -2.17 16 21 C -0.19 -2.27 10.78 -35.70 -0.38 -2.65 16 22 C -0.10 -0.94 6.80 -26.82 -0.18 -1.12 16 23 C -0.12 -1.18 6.73 -24.86 -0.17 -1.34 16 24 C 0.12 2.55 5.65 -3.71 -0.02 2.52 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.09 2.42 6.05 -51.93 -0.31 2.10 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 32 H 0.09 0.94 7.93 -51.93 -0.41 0.53 16 33 H 0.09 1.10 7.70 -51.93 -0.40 0.70 16 34 H 0.13 2.08 7.31 -52.49 -0.38 1.70 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 40 H 0.08 1.84 7.01 -51.93 -0.36 1.48 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -29.79 320.67 -9.18 -38.96 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.78 Total: 1.58 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -2.40 Total: -13.93 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.12 Total: -36.04 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.79 -9.18 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.004 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds