Wall clock time and date at job start Mon Mar 30 2020 00:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48509 * 109.46977 * 239.99525 * 3 2 1 5 5 H 1.48495 * 109.47536 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47023 * 120.00380 * 3 2 1 7 7 C 1.37872 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99922 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00214 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.49847 * 60.06250 * 9 7 2 11 11 C 1.53040 * 109.49863 * 300.00147 * 9 7 2 12 12 C 1.53041 * 109.54103 * 178.68125 * 11 9 7 13 13 C 1.53191 * 109.31121 * 61.36829 * 12 11 9 14 14 N 1.46928 * 108.77340 * 305.36602 * 13 12 11 15 15 C 1.34779 * 120.63000 * 233.58912 * 14 13 12 16 16 O 1.21281 * 120.00312 * 179.97438 * 15 14 13 17 17 C 1.50705 * 119.99983 * 359.97438 * 15 14 13 18 18 C 1.53001 * 109.47357 * 180.02562 * 17 15 14 19 19 H 1.08998 * 110.34235 * 307.28777 * 18 17 15 20 20 C 1.51097 * 110.48183 * 69.63646 * 18 17 15 21 21 C 1.30528 * 111.10203 * 135.29648 * 20 18 17 22 22 C 1.51106 * 111.10324 * 0.02562 * 21 20 18 23 23 C 1.54631 * 104.72516 * 343.56033 * 22 21 20 24 24 C 1.46917 * 118.74219 * 53.85981 * 14 13 12 25 25 H 0.97004 * 119.99402 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46008 * 58.65891 * 11 9 7 27 27 H 1.09000 * 109.44866 * 298.69940 * 11 9 7 28 28 H 1.08993 * 109.49551 * 301.41195 * 12 11 9 29 29 H 1.09001 * 109.52291 * 181.32719 * 12 11 9 30 30 H 1.08997 * 109.58890 * 185.57959 * 13 12 11 31 31 H 1.08995 * 109.70666 * 65.21721 * 13 12 11 32 32 H 1.09007 * 109.47171 * 59.99815 * 17 15 14 33 33 H 1.08998 * 109.46978 * 300.00061 * 17 15 14 34 34 H 1.07996 * 124.45390 * 315.32055 * 20 18 17 35 35 H 1.07997 * 124.44973 * 180.26405 * 21 20 18 36 36 H 1.08999 * 110.38677 * 102.37503 * 22 21 20 37 37 H 1.09000 * 110.38738 * 224.74949 * 22 21 20 38 38 H 1.09002 * 111.03445 * 142.66604 * 23 22 21 39 39 H 1.09002 * 111.03910 * 266.60573 * 23 22 21 40 40 H 1.09000 * 109.58956 * 65.93076 * 24 14 13 41 41 H 1.09005 * 109.59315 * 186.35400 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5576 -0.8907 11 6 0.3714 -2.5811 1.2491 12 6 -0.4190 -3.8915 1.2336 13 6 0.5570 -5.0721 1.2512 14 7 1.4998 -4.9228 0.1342 15 6 1.6772 -5.9218 -0.7529 16 8 2.4581 -5.7862 -1.6709 17 6 0.9051 -7.2075 -0.6042 18 6 1.2901 -8.1670 -1.7321 19 1 1.1812 -7.6774 -2.6998 20 6 2.7068 -8.6587 -1.5474 21 6 2.7874 -9.9460 -1.7477 22 6 1.4378 -10.5273 -2.1000 23 6 0.4200 -9.4438 -1.6744 24 6 2.2501 -3.6662 0.0062 25 1 -0.4849 0.8401 -0.0004 26 1 -0.3210 -1.7395 1.2616 27 1 1.0005 -2.5469 2.1386 28 1 -1.0295 -3.9374 0.3319 29 1 -1.0629 -3.9389 2.1118 30 1 0.0042 -6.0049 1.1405 31 1 1.1052 -5.0818 2.1932 32 1 -0.1634 -6.9976 -0.6541 33 1 1.1412 -7.6639 0.3570 34 1 3.5430 -8.0281 -1.2839 35 1 3.6982 -10.5209 -1.6681 36 1 1.3714 -10.7103 -3.1725 37 1 1.2650 -11.4495 -1.5452 38 1 -0.4080 -9.3857 -2.3809 39 1 0.0569 -9.6240 -0.6625 40 1 2.9334 -3.5610 0.8489 41 1 2.8148 -3.6709 -0.9262 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597916738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:34 Heat of formation + Delta-G solvation = -52.347575 kcal Electronic energy + Delta-G solvation = -20150.226412 eV Core-core repulsion = 17221.708822 eV Total energy + Delta-G solvation = -2928.517589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24532 -39.46824 -38.14399 -35.36899 -33.21682 -32.59234 -31.59217 -29.75632 -27.42708 -26.69252 -25.18755 -23.32148 -21.71304 -21.19198 -19.99567 -19.29316 -18.51855 -17.85020 -16.98166 -16.77311 -16.50148 -16.17890 -15.56784 -15.08520 -14.86358 -14.68284 -14.15687 -14.05547 -13.59181 -13.42013 -12.96246 -12.87274 -12.74051 -12.69358 -12.61445 -12.58730 -12.09074 -11.99820 -11.86862 -11.81445 -11.64883 -11.59413 -11.25622 -10.85881 -10.60084 -10.42491 -9.76285 -9.44702 -8.11700 -6.27244 1.40101 1.41345 1.41755 1.49236 1.74095 2.18218 2.43353 3.14388 3.55694 3.76707 3.90460 4.00451 4.13632 4.27250 4.36569 4.40215 4.50183 4.55326 4.59145 4.66503 4.70741 4.77323 4.82962 4.88155 4.98374 5.01479 5.03060 5.12960 5.13835 5.29786 5.33479 5.46003 5.49126 5.58754 5.60262 5.71800 5.92710 6.02133 6.13223 6.33996 6.63383 6.82132 7.30406 7.40862 8.91610 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039463 B = 0.004171 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.355470 B = 6711.686645 C = 7101.855725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.542 4.542 8 H 0.050 0.950 9 C 0.042 3.958 10 H -0.015 1.015 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.110 3.890 14 N -0.611 5.611 15 C 0.499 3.501 16 O -0.594 6.594 17 C -0.119 4.119 18 C -0.057 4.057 19 H 0.060 0.940 20 C -0.169 4.169 21 C -0.170 4.170 22 C -0.098 4.098 23 C -0.114 4.114 24 C 0.129 3.871 25 H 0.262 0.738 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 -19.647 2.965 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.580 4.580 8 H 0.069 0.931 9 C 0.023 3.977 10 H 0.003 0.997 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.012 4.012 14 N -0.343 5.343 15 C 0.289 3.711 16 O -0.476 6.476 17 C -0.159 4.159 18 C -0.075 4.075 19 H 0.079 0.921 20 C -0.187 4.187 21 C -0.188 4.188 22 C -0.135 4.135 23 C -0.151 4.151 24 C 0.006 3.994 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.069 -19.458 2.505 19.728 hybrid contribution 0.793 1.765 -0.352 1.966 sum -1.276 -17.694 2.153 17.870 Atomic orbital electron populations 1.70004 1.07063 1.27291 1.50798 1.25689 0.95722 1.02256 0.94512 0.85661 0.78462 0.79030 0.78803 1.20224 1.20618 1.19259 1.21432 0.93038 0.92084 1.51444 0.93140 1.18943 0.93097 0.91572 0.94116 0.99679 1.21424 0.98747 0.97259 0.97000 1.21913 0.97834 0.94911 1.01912 1.21988 0.90634 0.99827 0.88752 1.48432 1.42347 1.14975 1.28566 1.21577 0.82627 0.86236 0.80663 1.90632 1.39942 1.82668 1.34346 1.21786 1.01214 0.90815 1.02064 1.20832 0.93289 0.95961 0.97461 0.92125 1.23222 0.97636 0.96389 1.01503 1.23523 0.99683 0.95582 0.99996 1.21393 0.91358 0.99080 1.01679 1.22570 0.97208 0.91986 1.03352 1.21587 0.94467 0.83293 1.00021 0.92893 0.91978 0.94551 0.93639 0.89129 0.86500 0.90240 0.86628 0.86410 0.88605 0.85034 0.90481 0.89286 0.89767 0.88993 0.92395 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.75 11.31 21.45 0.24 -52.51 16 2 C 0.02 0.97 5.30 84.65 0.45 1.42 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.54 -30.66 8.56 25.60 0.22 -30.44 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 9 C 0.04 2.16 2.27 -11.32 -0.03 2.14 16 10 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 11 C -0.11 -4.81 4.96 30.62 0.15 -4.66 16 12 C -0.13 -4.26 6.08 30.67 0.19 -4.07 16 13 C 0.11 3.01 6.34 86.36 0.55 3.56 16 14 N -0.61 -22.29 2.97 -818.07 -2.43 -24.72 16 15 C 0.50 17.67 7.50 87.66 0.66 18.32 16 16 O -0.59 -26.39 14.33 -3.03 -0.04 -26.43 16 17 C -0.12 -2.77 3.45 29.85 0.10 -2.66 16 18 C -0.06 -1.35 2.51 -10.86 -0.03 -1.38 16 19 H 0.06 1.77 7.90 -2.39 -0.02 1.75 16 20 C -0.17 -4.36 9.27 26.26 0.24 -4.11 16 21 C -0.17 -3.40 10.78 26.26 0.28 -3.12 16 22 C -0.10 -1.50 6.81 30.53 0.21 -1.29 16 23 C -0.11 -1.78 6.71 31.70 0.21 -1.56 16 24 C 0.13 5.85 5.68 86.51 0.49 6.35 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.12 2.19 5.93 -2.39 -0.01 2.18 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.12 2.16 7.69 -2.38 -0.02 2.14 16 33 H 0.12 2.11 7.93 -2.39 -0.02 2.09 16 34 H 0.10 2.97 7.59 -2.91 -0.02 2.94 16 35 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.11 7.91 -2.39 -0.02 1.09 16 40 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.05 2.48 7.00 -2.38 -0.02 2.46 16 Total: -1.00 -69.67 321.07 4.49 -65.18 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.99 Total: 13.81 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 3.70 Total: -21.51 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -2.18 Total: -77.23 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.04 Total: -26.43 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -69.67 4.49 -65.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.834 kcal (2) G-P(sol) polarization free energy of solvation -69.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds