Wall clock time and date at job start Mon Mar 30 2020 00:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47395 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47086 * 300.00372 * 3 2 1 6 6 H 1.48501 * 109.46780 * 59.99869 * 3 2 1 7 7 C 1.37871 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50710 * 120.00119 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49700 * 299.93689 * 9 7 2 11 11 C 1.53038 * 109.49491 * 60.00434 * 9 7 2 12 12 C 1.53045 * 109.53516 * 181.31704 * 11 9 7 13 13 C 1.53192 * 109.31100 * 298.63622 * 12 11 9 14 14 N 1.46916 * 108.77740 * 54.63615 * 13 12 11 15 15 C 1.34777 * 120.63351 * 126.41394 * 14 13 12 16 16 O 1.21280 * 119.99616 * 355.67581 * 15 14 13 17 17 C 1.50696 * 120.00253 * 175.67255 * 15 14 13 18 18 H 1.08997 * 109.63885 * 37.64263 * 17 15 14 19 19 C 1.53020 * 109.64659 * 277.22171 * 17 15 14 20 20 C 1.50163 * 110.09743 * 191.09768 * 19 17 15 21 21 C 1.29438 * 124.15032 * 16.71338 * 20 19 17 22 22 C 1.50074 * 124.07241 * 359.76080 * 21 20 19 23 23 C 1.53025 * 110.14496 * 17.13373 * 22 21 20 24 24 C 1.46932 * 118.74055 * 306.38969 * 14 13 12 25 25 H 0.97007 * 119.99634 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46139 * 301.33318 * 11 9 7 27 27 H 1.08991 * 109.45952 * 61.30890 * 11 9 7 28 28 H 1.08999 * 109.49556 * 58.58593 * 12 11 9 29 29 H 1.08998 * 109.49777 * 178.64801 * 12 11 9 30 30 H 1.08999 * 109.58208 * 174.42176 * 13 12 11 31 31 H 1.08999 * 109.58566 * 294.70167 * 13 12 11 32 32 H 1.09000 * 109.35446 * 311.08550 * 19 17 15 33 33 H 1.09000 * 109.35987 * 70.66716 * 19 17 15 34 34 H 1.07998 * 117.89070 * 196.92361 * 20 19 17 35 35 H 1.07995 * 117.96933 * 179.73868 * 21 20 19 36 36 H 1.08991 * 109.35981 * 256.92419 * 22 21 20 37 37 H 1.09005 * 109.24355 * 137.26360 * 22 21 20 38 38 H 1.09004 * 109.63979 * 190.87432 * 23 22 21 39 39 H 1.09001 * 109.81637 * 70.35433 * 23 22 21 40 40 H 1.09001 * 109.58140 * 293.82513 * 24 14 13 41 41 H 1.08996 * 109.58605 * 173.39621 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6253 -2.5581 0.8901 11 6 0.3704 -2.5806 -1.2496 12 6 -0.4200 -3.8910 -1.2341 13 6 0.5560 -5.0716 -1.2526 14 7 1.4995 -4.9228 -0.1363 15 6 1.6775 -5.9222 0.7503 16 8 0.9997 -6.9253 0.6773 17 6 2.7185 -5.7932 1.8322 18 1 2.7458 -4.7653 2.1937 19 6 4.0904 -6.1789 1.2746 20 6 5.0820 -6.3167 2.3938 21 6 4.7578 -6.4406 3.6408 22 6 3.3441 -6.4588 4.1441 23 6 2.3777 -6.7385 2.9911 24 6 2.2458 -3.6640 -0.0051 25 1 -0.4850 0.8401 0.0004 26 1 -0.3221 -1.7389 -1.2613 27 1 0.9987 -2.5462 -2.1396 28 1 -1.0299 -3.9373 -0.3319 29 1 -1.0647 -3.9374 -2.1117 30 1 0.0031 -6.0044 -1.1419 31 1 1.1015 -5.0800 -2.1963 32 1 4.0115 -7.1291 0.7464 33 1 4.4279 -5.4090 0.5807 34 1 6.1322 -6.3086 2.1421 35 1 5.5540 -6.5373 4.3640 36 1 3.1063 -5.4924 4.5885 37 1 3.2414 -7.2386 4.8988 38 1 1.3537 -6.5607 3.3199 39 1 2.4828 -7.7728 2.6635 40 1 2.9309 -3.5561 -0.8460 41 1 2.8079 -3.6681 0.9287 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597917111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:58 Heat of formation + Delta-G solvation = -43.261021 kcal Electronic energy + Delta-G solvation = -20654.700099 eV Core-core repulsion = 17726.576533 eV Total energy + Delta-G solvation = -2928.123567 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09354 -37.82438 -36.55604 -33.34557 -32.10312 -30.89888 -30.53909 -29.97807 -25.25831 -24.84308 -23.42297 -22.70859 -21.36156 -19.81846 -18.24433 -17.85836 -16.88742 -16.09600 -15.99578 -15.21650 -14.62617 -14.44620 -13.91184 -13.58760 -13.36923 -13.27470 -12.97422 -12.71849 -12.57383 -12.32666 -12.21482 -11.97854 -11.82474 -11.06206 -10.94433 -10.84219 -10.75769 -10.62904 -10.33776 -10.20088 -9.98496 -9.77463 -9.59774 -9.07516 -8.97864 -8.87150 -8.44284 -7.89966 -6.07648 -4.16144 2.30305 3.06166 3.24005 3.32775 3.35349 3.55961 4.36073 4.67819 4.78733 4.95113 5.19435 5.22465 5.31796 5.33913 5.50048 5.60806 5.65663 5.76064 5.79833 5.82744 5.91920 5.97673 6.01822 6.08591 6.24491 6.25806 6.32447 6.41789 6.54163 6.55793 6.65713 6.78054 6.94925 6.98648 7.15734 7.32558 7.63545 7.85871 7.95648 8.05974 8.30733 8.66129 8.87981 9.49580 10.97552 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.006120 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.129006 B = 4574.133015 C = 5546.771239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.038 3.962 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.601 5.601 15 C 0.517 3.483 16 O -0.563 6.563 17 C -0.110 4.110 18 H 0.101 0.899 19 C -0.078 4.078 20 C -0.150 4.150 21 C -0.157 4.157 22 C -0.092 4.092 23 C -0.098 4.098 24 C 0.109 3.891 25 H 0.261 0.739 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 -9.890 3.135 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.076 0.924 9 C 0.019 3.981 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.333 5.333 15 C 0.305 3.695 16 O -0.443 6.443 17 C -0.131 4.131 18 H 0.119 0.881 19 C -0.115 4.115 20 C -0.168 4.168 21 C -0.175 4.175 22 C -0.129 4.129 23 C -0.135 4.135 24 C -0.012 4.012 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.937 -10.279 3.080 12.263 hybrid contribution 0.520 1.152 -0.072 1.266 sum 6.457 -9.127 3.008 11.578 Atomic orbital electron populations 1.69891 1.05927 1.26458 1.50214 1.24942 0.94830 0.99121 0.94868 0.86543 0.80132 0.83743 0.77630 1.19725 1.21005 1.21015 1.21094 0.92941 0.90242 1.51276 0.92391 1.18991 0.92918 0.91056 0.95105 0.95203 1.21623 0.99443 0.95554 0.98384 1.21990 0.97742 0.96533 1.00931 1.21557 0.91430 0.99611 0.88311 1.48316 1.41907 1.15873 1.27171 1.20517 0.83903 0.82688 0.82343 1.90609 1.48554 1.30843 1.74264 1.21408 0.94172 1.02409 0.95104 0.88149 1.20354 0.91909 1.02263 0.96973 1.21998 0.99146 1.01185 0.94498 1.22052 0.97533 1.01461 0.96446 1.20496 0.92342 1.02132 0.97951 1.21401 0.99074 0.99492 0.93582 1.22205 0.95323 0.82811 1.00897 0.92945 0.88684 0.94608 0.92502 0.92603 0.90352 0.92370 0.90605 0.90239 0.87778 0.88054 0.90614 0.90975 0.91279 0.91074 0.92353 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.34 11.31 55.43 0.63 -23.72 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -13.24 8.56 -34.44 -0.29 -13.54 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.04 0.90 2.25 -91.65 -0.21 0.69 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 12 C -0.13 -2.57 6.08 -26.61 -0.16 -2.73 16 13 C 0.11 2.04 6.44 -3.72 -0.02 2.02 16 14 N -0.60 -11.20 2.97 -172.78 -0.51 -11.71 16 15 C 0.52 9.44 6.82 -10.99 -0.07 9.37 16 16 O -0.56 -11.65 15.63 5.56 0.09 -11.56 16 17 C -0.11 -1.65 1.73 -91.56 -0.16 -1.81 16 18 H 0.10 1.55 6.20 -51.93 -0.32 1.23 16 19 C -0.08 -1.01 5.43 -28.13 -0.15 -1.17 16 20 C -0.15 -1.73 9.80 -35.85 -0.35 -2.08 16 21 C -0.16 -1.73 9.80 -35.90 -0.35 -2.08 16 22 C -0.09 -1.04 6.12 -28.17 -0.17 -1.21 16 23 C -0.10 -1.34 4.69 -26.52 -0.12 -1.46 16 24 C 0.11 2.11 5.33 -3.71 -0.02 2.09 16 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 34 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.10 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.33 5.43 -51.93 -0.28 1.05 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -28.28 318.33 -9.07 -37.35 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.73 Total: 2.46 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.32 Total: -12.96 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.11 Total: -35.43 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.28 -9.07 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597917111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.911 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds