Wall clock time and date at job start Mon Mar 30 2020 00:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47395 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47086 * 300.00372 * 3 2 1 6 6 H 1.48501 * 109.46780 * 59.99869 * 3 2 1 7 7 C 1.37871 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50710 * 120.00119 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49700 * 299.93689 * 9 7 2 11 11 C 1.53038 * 109.49491 * 60.00434 * 9 7 2 12 12 C 1.53045 * 109.53516 * 181.31704 * 11 9 7 13 13 C 1.53192 * 109.31100 * 298.63622 * 12 11 9 14 14 N 1.46916 * 108.77740 * 54.63615 * 13 12 11 15 15 C 1.34777 * 120.63351 * 126.41394 * 14 13 12 16 16 O 1.21280 * 119.99616 * 355.67581 * 15 14 13 17 17 C 1.50696 * 120.00253 * 175.67255 * 15 14 13 18 18 H 1.08997 * 109.63885 * 37.64263 * 17 15 14 19 19 C 1.53020 * 109.64659 * 277.22171 * 17 15 14 20 20 C 1.50163 * 110.09743 * 191.09768 * 19 17 15 21 21 C 1.29438 * 124.15032 * 16.71338 * 20 19 17 22 22 C 1.50074 * 124.07241 * 359.76080 * 21 20 19 23 23 C 1.53025 * 110.14496 * 17.13373 * 22 21 20 24 24 C 1.46932 * 118.74055 * 306.38969 * 14 13 12 25 25 H 0.97007 * 119.99634 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46139 * 301.33318 * 11 9 7 27 27 H 1.08991 * 109.45952 * 61.30890 * 11 9 7 28 28 H 1.08999 * 109.49556 * 58.58593 * 12 11 9 29 29 H 1.08998 * 109.49777 * 178.64801 * 12 11 9 30 30 H 1.08999 * 109.58208 * 174.42176 * 13 12 11 31 31 H 1.08999 * 109.58566 * 294.70167 * 13 12 11 32 32 H 1.09000 * 109.35446 * 311.08550 * 19 17 15 33 33 H 1.09000 * 109.35987 * 70.66716 * 19 17 15 34 34 H 1.07998 * 117.89070 * 196.92361 * 20 19 17 35 35 H 1.07995 * 117.96933 * 179.73868 * 21 20 19 36 36 H 1.08991 * 109.35981 * 256.92419 * 22 21 20 37 37 H 1.09005 * 109.24355 * 137.26360 * 22 21 20 38 38 H 1.09004 * 109.63979 * 190.87432 * 23 22 21 39 39 H 1.09001 * 109.81637 * 70.35433 * 23 22 21 40 40 H 1.09001 * 109.58140 * 293.82513 * 24 14 13 41 41 H 1.08996 * 109.58605 * 173.39621 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6253 -2.5581 0.8901 11 6 0.3704 -2.5806 -1.2496 12 6 -0.4200 -3.8910 -1.2341 13 6 0.5560 -5.0716 -1.2526 14 7 1.4995 -4.9228 -0.1363 15 6 1.6775 -5.9222 0.7503 16 8 0.9997 -6.9253 0.6773 17 6 2.7185 -5.7932 1.8322 18 1 2.7458 -4.7653 2.1937 19 6 4.0904 -6.1789 1.2746 20 6 5.0820 -6.3167 2.3938 21 6 4.7578 -6.4406 3.6408 22 6 3.3441 -6.4588 4.1441 23 6 2.3777 -6.7385 2.9911 24 6 2.2458 -3.6640 -0.0051 25 1 -0.4850 0.8401 0.0004 26 1 -0.3221 -1.7389 -1.2613 27 1 0.9987 -2.5462 -2.1396 28 1 -1.0299 -3.9373 -0.3319 29 1 -1.0647 -3.9374 -2.1117 30 1 0.0031 -6.0044 -1.1419 31 1 1.1015 -5.0800 -2.1963 32 1 4.0115 -7.1291 0.7464 33 1 4.4279 -5.4090 0.5807 34 1 6.1322 -6.3086 2.1421 35 1 5.5540 -6.5373 4.3640 36 1 3.1063 -5.4924 4.5885 37 1 3.2414 -7.2386 4.8988 38 1 1.3537 -6.5607 3.3199 39 1 2.4828 -7.7728 2.6635 40 1 2.9309 -3.5561 -0.8460 41 1 2.8079 -3.6681 0.9287 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597917111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:57 Heat of formation + Delta-G solvation = -57.202148 kcal Electronic energy + Delta-G solvation = -20655.304632 eV Core-core repulsion = 17726.576533 eV Total energy + Delta-G solvation = -2928.728099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49760 -39.07985 -38.06477 -35.19035 -33.59156 -32.21550 -31.75096 -31.44948 -27.06629 -26.41524 -24.60923 -23.92141 -22.94326 -21.42001 -19.75173 -18.93103 -18.51612 -17.74295 -17.27625 -16.64216 -16.30533 -15.89020 -15.13475 -15.08241 -14.83808 -14.56110 -14.46978 -14.09591 -13.99948 -13.66013 -13.56588 -13.20367 -13.14551 -12.87411 -12.72332 -12.53711 -12.05359 -11.93793 -11.79764 -11.63163 -11.57702 -11.40619 -11.20631 -10.79208 -10.53653 -10.40228 -9.84834 -9.49350 -8.07529 -6.22772 1.43281 1.44473 1.46444 1.56367 1.62273 2.11347 2.46155 3.20305 3.48047 3.75807 3.81944 4.00761 4.19367 4.23706 4.29186 4.32802 4.41670 4.46044 4.54495 4.56675 4.63901 4.73835 4.79694 4.83327 4.91907 4.97704 5.03706 5.04948 5.10609 5.24633 5.27135 5.34660 5.43336 5.62693 5.65062 5.79778 5.93331 6.08283 6.10141 6.33512 6.51642 6.89390 7.18863 7.46407 8.96643 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.006120 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.129006 B = 4574.133015 C = 5546.771239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.528 4.528 8 H 0.064 0.936 9 C 0.036 3.964 10 H -0.009 1.009 11 C -0.106 4.106 12 C -0.124 4.124 13 C 0.114 3.886 14 N -0.606 5.606 15 C 0.514 3.486 16 O -0.589 6.589 17 C -0.107 4.107 18 H 0.096 0.904 19 C -0.074 4.074 20 C -0.161 4.161 21 C -0.156 4.156 22 C -0.091 4.091 23 C -0.096 4.096 24 C 0.123 3.877 25 H 0.259 0.741 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 -10.303 3.337 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.567 4.567 8 H 0.082 0.918 9 C 0.017 3.983 10 H 0.009 0.991 11 C -0.144 4.144 12 C -0.162 4.162 13 C -0.008 4.008 14 N -0.336 5.336 15 C 0.303 3.697 16 O -0.471 6.471 17 C -0.128 4.128 18 H 0.114 0.886 19 C -0.111 4.111 20 C -0.178 4.178 21 C -0.174 4.174 22 C -0.127 4.127 23 C -0.134 4.134 24 C 0.002 3.998 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.034 -10.698 3.281 13.775 hybrid contribution -0.197 1.262 -0.123 1.283 sum 7.837 -9.436 3.158 12.666 Atomic orbital electron populations 1.70042 1.07356 1.27026 1.51291 1.25711 0.95528 1.02410 0.94789 0.85573 0.79420 0.79788 0.77278 1.18535 1.20976 1.21162 1.21473 0.93421 0.91252 1.50524 0.91752 1.18930 0.93337 0.92254 0.93795 0.99093 1.21449 0.98941 0.95993 0.98027 1.21871 0.97781 0.95483 1.01075 1.21590 0.91344 0.98716 0.89146 1.48382 1.41990 1.15722 1.27535 1.21112 0.84034 0.82025 0.82480 1.90590 1.49707 1.31846 1.74956 1.21447 0.94420 1.02505 0.94460 0.88605 1.20332 0.90957 1.02084 0.97734 1.22079 0.99657 1.01987 0.94120 1.22261 0.97751 1.00537 0.96846 1.20516 0.92015 1.02954 0.97249 1.21390 0.99183 0.98739 0.94106 1.21967 0.94247 0.81524 1.02093 0.93148 0.92007 0.94195 0.94517 0.90226 0.90288 0.90253 0.91011 0.89986 0.85784 0.85719 0.90390 0.89047 0.92653 0.91698 0.91175 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.52 11.31 21.45 0.24 -51.27 16 2 C 0.01 0.76 5.30 84.65 0.45 1.21 16 3 Si 0.95 41.62 29.54 68.60 2.03 43.64 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.53 -27.01 8.56 25.60 0.22 -26.79 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.04 1.70 2.25 -11.46 -0.03 1.68 16 10 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 11 C -0.11 -4.80 4.96 30.62 0.15 -4.64 16 12 C -0.12 -4.75 6.08 30.67 0.19 -4.56 16 13 C 0.11 4.00 6.44 86.36 0.56 4.56 16 14 N -0.61 -22.15 2.97 -818.93 -2.43 -24.58 16 15 C 0.51 18.55 6.82 87.66 0.60 19.14 16 16 O -0.59 -24.34 15.63 -3.03 -0.05 -24.39 16 17 C -0.11 -3.13 1.73 -11.40 -0.02 -3.15 16 18 H 0.10 2.88 6.20 -2.39 -0.01 2.87 16 19 C -0.07 -1.80 5.43 29.69 0.16 -1.64 16 20 C -0.16 -3.26 9.80 27.07 0.27 -3.00 16 21 C -0.16 -2.98 9.80 27.04 0.27 -2.72 16 22 C -0.09 -1.85 6.12 29.66 0.18 -1.66 16 23 C -0.10 -2.56 4.69 30.73 0.14 -2.41 16 24 C 0.12 4.66 5.33 86.36 0.46 5.12 16 25 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 26 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.08 2.79 7.00 -2.39 -0.02 2.77 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 33 H 0.08 1.94 7.94 -2.39 -0.02 1.92 16 34 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.09 3.01 5.43 -2.39 -0.01 3.00 16 Total: -1.00 -60.93 318.33 4.37 -56.56 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.99 Total: 18.90 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 3.59 Total: -18.86 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.19 Total: -75.85 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -60.93 4.37 -56.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597917111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.642 kcal (2) G-P(sol) polarization free energy of solvation -60.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds