Wall clock time and date at job start Mon Mar 30 2020 00:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99750 * 2 1 4 4 H 1.48495 * 109.47361 * 270.00154 * 3 2 1 5 5 H 1.48500 * 109.47077 * 30.00493 * 3 2 1 6 6 H 1.48505 * 109.46710 * 150.00273 * 3 2 1 7 7 C 1.37872 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00058 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99863 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.49618 * 60.05902 * 9 7 2 11 11 C 1.53047 * 109.49471 * 299.99420 * 9 7 2 12 12 C 1.53039 * 109.53630 * 178.68129 * 11 9 7 13 13 C 1.53198 * 109.30900 * 61.36959 * 12 11 9 14 14 N 1.46921 * 108.77517 * 305.36130 * 13 12 11 15 15 C 1.34778 * 120.62931 * 233.58932 * 14 13 12 16 16 O 1.21285 * 119.99470 * 184.66378 * 15 14 13 17 17 C 1.50693 * 120.00123 * 4.65923 * 15 14 13 18 18 H 1.09004 * 109.64000 * 325.04428 * 17 15 14 19 19 C 1.53024 * 109.64325 * 204.62730 * 17 15 14 20 20 C 1.50062 * 110.14964 * 190.66678 * 19 17 15 21 21 C 1.29445 * 124.07762 * 17.13169 * 20 19 17 22 22 C 1.50073 * 124.07082 * 359.79138 * 21 20 19 23 23 C 1.52866 * 110.23325 * 16.69214 * 22 21 20 24 24 C 1.46931 * 118.73948 * 53.86306 * 14 13 12 25 25 H 0.97002 * 120.00156 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.45414 * 58.66383 * 11 9 7 27 27 H 1.08999 * 109.44961 * 298.70094 * 11 9 7 28 28 H 1.09002 * 109.50223 * 301.41779 * 12 11 9 29 29 H 1.09001 * 109.49486 * 181.31595 * 12 11 9 30 30 H 1.09004 * 109.58101 * 185.57693 * 13 12 11 31 31 H 1.09000 * 109.70450 * 65.22211 * 13 12 11 32 32 H 1.09002 * 109.35726 * 70.45781 * 19 17 15 33 33 H 1.08996 * 109.25085 * 310.80886 * 19 17 15 34 34 H 1.08003 * 117.96448 * 197.10796 * 20 19 17 35 35 H 1.07998 * 117.96789 * 179.50897 * 21 20 19 36 36 H 1.09000 * 109.35637 * 137.07733 * 22 21 20 37 37 H 1.09003 * 109.35241 * 256.66394 * 22 21 20 38 38 H 1.08998 * 109.70558 * 191.10068 * 23 22 21 39 39 H 1.09004 * 109.61651 * 70.66033 * 23 22 21 40 40 H 1.08994 * 109.58793 * 65.92399 * 24 14 13 41 41 H 1.08994 * 109.58884 * 186.35343 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8757 -0.6814 0.8892 11 6 4.0218 -0.4725 -1.2507 12 6 5.5518 -0.4432 -1.2357 13 6 6.0863 -1.8788 -1.2543 14 7 5.4861 -2.6212 -0.1375 15 6 6.2630 -3.2748 0.7489 16 8 5.7546 -3.9532 1.6162 17 6 7.7633 -3.1627 0.6623 18 1 8.0659 -3.0954 -0.3827 19 6 8.4090 -4.3914 1.3066 20 6 9.8861 -4.1775 1.4617 21 6 10.4616 -3.0195 1.4021 22 6 9.7323 -1.7295 1.1651 23 6 8.2359 -1.9140 1.4175 24 6 4.0226 -2.6427 -0.0089 25 1 -0.4850 0.8400 0.0004 26 1 3.6391 0.5481 -1.2623 27 1 3.6773 -0.9997 -2.1403 28 1 5.8973 0.0620 -0.3337 29 1 5.9140 0.0912 -2.1140 30 1 7.1706 -1.8664 -1.1440 31 1 5.8202 -2.3578 -2.1965 32 1 8.2343 -5.2635 0.6765 33 1 7.9632 -4.5590 2.2870 34 1 10.5079 -5.0436 1.6341 35 1 11.5325 -2.9786 1.5356 36 1 10.1223 -0.9652 1.8373 37 1 9.8849 -1.4126 0.1334 38 1 7.6921 -1.0406 1.0579 39 1 8.0580 -2.0424 2.4852 40 1 3.5896 -3.1813 -0.8518 41 1 3.7448 -3.1346 0.9232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597917113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:03 Heat of formation + Delta-G solvation = -33.654463 kcal Electronic energy + Delta-G solvation = -20698.243030 eV Core-core repulsion = 17770.536035 eV Total energy + Delta-G solvation = -2927.706995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.27977 -38.02943 -36.78831 -33.56378 -31.86594 -31.40697 -30.83667 -30.33069 -25.64856 -25.02727 -23.38656 -22.76197 -21.69593 -19.92324 -18.48964 -18.04868 -16.95147 -16.65259 -16.14651 -15.08948 -15.01836 -14.56959 -14.20363 -13.78184 -13.64388 -13.33846 -13.16288 -12.95161 -12.61479 -12.53188 -12.44090 -12.32378 -12.17540 -11.46439 -11.17861 -10.97800 -10.89989 -10.65456 -10.39250 -10.32868 -10.16951 -9.84757 -9.55348 -9.25779 -9.09154 -8.98420 -8.57946 -8.07775 -6.10812 -4.10880 2.15166 2.93484 3.22306 3.34332 3.36542 3.40665 4.37070 4.48379 4.60457 4.76550 4.93936 5.07646 5.15042 5.18695 5.19929 5.31372 5.37905 5.40756 5.55193 5.57495 5.71992 5.83797 5.85649 5.94120 5.97477 6.04381 6.05740 6.17289 6.22425 6.36838 6.48964 6.52336 6.67841 6.72528 6.80692 6.86294 7.12268 7.44867 7.71384 7.86248 8.45623 8.55405 8.92641 9.50713 11.02267 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032317 B = 0.005345 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.215253 B = 5237.142283 C = 5608.200730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.006 3.994 10 H 0.030 0.970 11 C -0.122 4.122 12 C -0.139 4.139 13 C 0.108 3.892 14 N -0.607 5.607 15 C 0.515 3.485 16 O -0.547 6.547 17 C -0.108 4.108 18 H 0.092 0.908 19 C -0.078 4.078 20 C -0.148 4.148 21 C -0.163 4.163 22 C -0.088 4.088 23 C -0.109 4.109 24 C 0.127 3.873 25 H 0.264 0.736 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.556 -3.015 -1.876 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.177 4.177 13 C -0.015 4.015 14 N -0.339 5.339 15 C 0.302 3.698 16 O -0.425 6.425 17 C -0.129 4.129 18 H 0.110 0.890 19 C -0.115 4.115 20 C -0.166 4.166 21 C -0.181 4.181 22 C -0.125 4.125 23 C -0.147 4.147 24 C 0.006 3.994 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.102 -3.275 -1.416 20.416 hybrid contribution 0.393 1.065 -0.201 1.153 sum 20.495 -2.210 -1.617 20.677 Atomic orbital electron populations 1.69895 1.06269 1.26993 1.50510 1.24981 0.94675 0.98987 0.94364 0.86827 0.79931 0.83586 0.77761 1.20586 1.22513 1.19130 1.20920 0.88346 0.94735 1.51297 0.90602 1.19542 0.96829 0.91393 0.93596 0.95214 1.21991 0.92010 1.00700 1.01298 1.22007 0.98711 0.95443 1.01515 1.21749 0.97460 0.92663 0.89614 1.48333 1.08318 1.50092 1.27160 1.20467 0.88863 0.79195 0.81236 1.90659 1.75530 1.40493 1.35812 1.21385 0.92239 0.97601 1.01665 0.88983 1.20332 0.92086 0.96605 1.02459 1.22079 0.96271 0.97571 1.00711 1.22035 0.99490 0.94476 1.02108 1.20410 0.94222 0.95887 1.01949 1.21516 0.95607 0.96504 1.01100 1.21858 0.75849 0.99309 1.02373 0.92591 0.93221 0.91924 0.92113 0.91755 0.90399 0.91511 0.90867 0.89181 0.87816 0.88049 0.90746 0.90807 0.90904 0.90953 0.92000 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 21.68 24.39 -169.99 -4.15 17.54 16 4 H -0.28 -6.54 6.86 56.52 0.39 -6.15 16 5 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 7 C -0.51 -14.25 9.15 -34.44 -0.31 -14.57 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.01 0.14 1.86 -91.42 -0.17 -0.03 16 10 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 11 C -0.12 -2.47 4.66 -26.69 -0.12 -2.60 16 12 C -0.14 -2.14 6.08 -26.61 -0.16 -2.31 16 13 C 0.11 1.49 6.27 -3.71 -0.02 1.47 16 14 N -0.61 -10.47 2.97 -172.50 -0.51 -10.98 16 15 C 0.51 8.77 6.83 -10.99 -0.08 8.69 16 16 O -0.55 -11.34 15.30 5.55 0.08 -11.25 16 17 C -0.11 -1.35 1.73 -91.56 -0.16 -1.51 16 18 H 0.09 1.00 6.26 -51.93 -0.33 0.67 16 19 C -0.08 -0.92 5.17 -28.18 -0.15 -1.07 16 20 C -0.15 -1.46 9.80 -35.90 -0.35 -1.81 16 21 C -0.16 -1.49 9.81 -35.90 -0.35 -1.85 16 22 C -0.09 -0.79 6.11 -28.25 -0.17 -0.97 16 23 C -0.11 -1.27 5.18 -26.60 -0.14 -1.40 16 24 C 0.13 2.63 5.67 -3.48 -0.02 2.61 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.05 1.08 3.25 -51.93 -0.17 0.91 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.85 5.40 -51.93 -0.28 0.57 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.23 7.46 -51.93 -0.39 0.84 16 34 H 0.10 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.93 7.03 -51.93 -0.37 1.56 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -31.43 311.28 -7.99 -39.42 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.57 Total: 0.52 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.30 Total: -13.39 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.26 Total: -37.52 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.15 Total: 17.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.43 -7.99 -39.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597917113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.763 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds