Wall clock time and date at job start Mon Mar 30 2020 00:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99750 * 2 1 4 4 H 1.48495 * 109.47361 * 270.00154 * 3 2 1 5 5 H 1.48500 * 109.47077 * 30.00493 * 3 2 1 6 6 H 1.48505 * 109.46710 * 150.00273 * 3 2 1 7 7 C 1.37872 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00058 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99863 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.49618 * 60.05902 * 9 7 2 11 11 C 1.53047 * 109.49471 * 299.99420 * 9 7 2 12 12 C 1.53039 * 109.53630 * 178.68129 * 11 9 7 13 13 C 1.53198 * 109.30900 * 61.36959 * 12 11 9 14 14 N 1.46921 * 108.77517 * 305.36130 * 13 12 11 15 15 C 1.34778 * 120.62931 * 233.58932 * 14 13 12 16 16 O 1.21285 * 119.99470 * 184.66378 * 15 14 13 17 17 C 1.50693 * 120.00123 * 4.65923 * 15 14 13 18 18 H 1.09004 * 109.64000 * 325.04428 * 17 15 14 19 19 C 1.53024 * 109.64325 * 204.62730 * 17 15 14 20 20 C 1.50062 * 110.14964 * 190.66678 * 19 17 15 21 21 C 1.29445 * 124.07762 * 17.13169 * 20 19 17 22 22 C 1.50073 * 124.07082 * 359.79138 * 21 20 19 23 23 C 1.52866 * 110.23325 * 16.69214 * 22 21 20 24 24 C 1.46931 * 118.73948 * 53.86306 * 14 13 12 25 25 H 0.97002 * 120.00156 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.45414 * 58.66383 * 11 9 7 27 27 H 1.08999 * 109.44961 * 298.70094 * 11 9 7 28 28 H 1.09002 * 109.50223 * 301.41779 * 12 11 9 29 29 H 1.09001 * 109.49486 * 181.31595 * 12 11 9 30 30 H 1.09004 * 109.58101 * 185.57693 * 13 12 11 31 31 H 1.09000 * 109.70450 * 65.22211 * 13 12 11 32 32 H 1.09002 * 109.35726 * 70.45781 * 19 17 15 33 33 H 1.08996 * 109.25085 * 310.80886 * 19 17 15 34 34 H 1.08003 * 117.96448 * 197.10796 * 20 19 17 35 35 H 1.07998 * 117.96789 * 179.50897 * 21 20 19 36 36 H 1.09000 * 109.35637 * 137.07733 * 22 21 20 37 37 H 1.09003 * 109.35241 * 256.66394 * 22 21 20 38 38 H 1.08998 * 109.70558 * 191.10068 * 23 22 21 39 39 H 1.09004 * 109.61651 * 70.66033 * 23 22 21 40 40 H 1.08994 * 109.58793 * 65.92399 * 24 14 13 41 41 H 1.08994 * 109.58884 * 186.35343 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8757 -0.6814 0.8892 11 6 4.0218 -0.4725 -1.2507 12 6 5.5518 -0.4432 -1.2357 13 6 6.0863 -1.8788 -1.2543 14 7 5.4861 -2.6212 -0.1375 15 6 6.2630 -3.2748 0.7489 16 8 5.7546 -3.9532 1.6162 17 6 7.7633 -3.1627 0.6623 18 1 8.0659 -3.0954 -0.3827 19 6 8.4090 -4.3914 1.3066 20 6 9.8861 -4.1775 1.4617 21 6 10.4616 -3.0195 1.4021 22 6 9.7323 -1.7295 1.1651 23 6 8.2359 -1.9140 1.4175 24 6 4.0226 -2.6427 -0.0089 25 1 -0.4850 0.8400 0.0004 26 1 3.6391 0.5481 -1.2623 27 1 3.6773 -0.9997 -2.1403 28 1 5.8973 0.0620 -0.3337 29 1 5.9140 0.0912 -2.1140 30 1 7.1706 -1.8664 -1.1440 31 1 5.8202 -2.3578 -2.1965 32 1 8.2343 -5.2635 0.6765 33 1 7.9632 -4.5590 2.2870 34 1 10.5079 -5.0436 1.6341 35 1 11.5325 -2.9786 1.5356 36 1 10.1223 -0.9652 1.8373 37 1 9.8849 -1.4126 0.1334 38 1 7.6921 -1.0406 1.0579 39 1 8.0580 -2.0424 2.4852 40 1 3.5896 -3.1813 -0.8518 41 1 3.7448 -3.1346 0.9232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597917113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:02 Heat of formation + Delta-G solvation = -53.228862 kcal Electronic energy + Delta-G solvation = -20699.091840 eV Core-core repulsion = 17770.536035 eV Total energy + Delta-G solvation = -2928.555805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55222 -39.17382 -38.13909 -35.37681 -33.60521 -32.57317 -31.77339 -31.62452 -27.35698 -26.54971 -24.42045 -23.73501 -23.19324 -21.49984 -19.83508 -19.03383 -18.81320 -17.94387 -17.23153 -16.71015 -16.29370 -16.02526 -15.41585 -15.30283 -14.91173 -14.67486 -14.38952 -14.23255 -14.00849 -13.90091 -13.66187 -13.34842 -13.20702 -12.97931 -12.84379 -12.43558 -12.10679 -11.95361 -11.92034 -11.71241 -11.51219 -11.27712 -11.22202 -11.06474 -10.69901 -10.53224 -9.81894 -9.55359 -8.32881 -6.38444 1.27304 1.35128 1.44980 1.45533 1.61748 2.07163 2.30325 3.02054 3.46005 3.72721 3.84847 3.92889 4.05497 4.11891 4.23729 4.28854 4.32195 4.42201 4.44409 4.52278 4.63585 4.65709 4.74309 4.76631 4.88608 4.95039 5.00967 5.02850 5.07565 5.12733 5.14526 5.26292 5.33242 5.38298 5.43302 5.64125 5.73947 5.80090 6.09740 6.24252 6.52629 6.67906 7.19469 7.27500 8.84026 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032317 B = 0.005345 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.215253 B = 5237.142283 C = 5608.200730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.256 1.256 5 H -0.302 1.302 6 H -0.251 1.251 7 C -0.525 4.525 8 H 0.031 0.969 9 C 0.010 3.990 10 H 0.014 0.986 11 C -0.122 4.122 12 C -0.132 4.132 13 C 0.104 3.896 14 N -0.609 5.609 15 C 0.508 3.492 16 O -0.595 6.595 17 C -0.097 4.097 18 H 0.122 0.878 19 C -0.077 4.077 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.085 4.085 23 C -0.109 4.109 24 C 0.137 3.863 25 H 0.267 0.733 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.986 -1.273 -3.584 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.181 1.181 5 H -0.230 1.230 6 H -0.175 1.175 7 C -0.563 4.563 8 H 0.049 0.951 9 C -0.009 4.009 10 H 0.032 0.968 11 C -0.160 4.160 12 C -0.170 4.170 13 C -0.017 4.017 14 N -0.340 5.340 15 C 0.297 3.703 16 O -0.477 6.477 17 C -0.118 4.118 18 H 0.140 0.860 19 C -0.114 4.114 20 C -0.181 4.181 21 C -0.172 4.172 22 C -0.122 4.122 23 C -0.147 4.147 24 C 0.014 3.986 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.137 0.863 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 24.575 -1.537 -3.153 24.824 hybrid contribution -1.080 0.414 0.383 1.218 sum 23.495 -1.123 -2.770 23.684 Atomic orbital electron populations 1.70057 1.08328 1.28175 1.52374 1.25897 0.95451 1.03180 0.93900 0.85734 0.78817 0.78143 0.79047 1.18112 1.22983 1.17473 1.21243 0.91211 0.93155 1.50718 0.95096 1.19410 0.93604 0.93116 0.94819 0.96779 1.21870 0.95992 0.99125 0.98999 1.21990 0.94509 0.96975 1.03504 1.22096 0.99534 0.91274 0.88825 1.48397 1.06518 1.50633 1.28424 1.21412 0.90849 0.77943 0.80054 1.90639 1.76777 1.42524 1.37714 1.21425 0.88149 0.98566 1.03650 0.85999 1.20274 0.93713 0.96490 1.00921 1.22037 0.94781 0.98796 1.02481 1.22285 1.00647 0.94002 1.00261 1.20465 0.91737 0.96244 1.03727 1.21540 0.97867 0.95676 0.99642 1.21391 0.78927 0.97571 1.00663 0.92443 0.94395 0.91864 0.92097 0.87657 0.86295 0.89787 0.90856 0.92077 0.86467 0.85848 0.89364 0.88492 0.90777 0.93089 0.92187 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 2 C 0.01 0.75 5.45 84.65 0.46 1.21 16 3 Si 0.96 44.75 24.39 68.60 1.67 46.43 16 4 H -0.26 -10.97 6.86 99.48 0.68 -10.29 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 7 C -0.52 -30.46 9.15 25.60 0.23 -30.23 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 9 C 0.01 0.47 1.86 -11.31 -0.02 0.45 16 10 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 11 C -0.12 -4.67 4.66 30.62 0.14 -4.53 16 12 C -0.13 -3.47 6.08 30.67 0.19 -3.29 16 13 C 0.10 2.42 6.27 86.37 0.54 2.96 16 14 N -0.61 -20.24 2.97 -818.07 -2.43 -22.67 16 15 C 0.51 17.03 6.83 87.65 0.60 17.62 16 16 O -0.60 -25.72 15.30 -3.04 -0.05 -25.77 16 17 C -0.10 -2.20 1.73 -11.40 -0.02 -2.22 16 18 H 0.12 2.05 6.26 -2.39 -0.01 2.03 16 19 C -0.08 -1.73 5.17 29.66 0.15 -1.58 16 20 C -0.16 -2.76 9.80 27.03 0.27 -2.50 16 21 C -0.15 -2.17 9.81 27.04 0.27 -1.91 16 22 C -0.09 -1.14 6.11 29.61 0.18 -0.96 16 23 C -0.11 -2.21 5.18 30.68 0.16 -2.05 16 24 C 0.14 5.88 5.67 86.51 0.49 6.37 16 25 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 26 H 0.04 1.54 3.25 -2.39 -0.01 1.53 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.12 1.84 5.40 -2.38 -0.01 1.83 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.72 7.46 -2.39 -0.02 1.70 16 34 H 0.12 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.12 1.27 8.06 -2.91 -0.02 1.24 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 40 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.05 2.53 7.03 -2.39 -0.02 2.51 16 Total: -1.00 -74.07 311.28 4.05 -70.02 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.92 Total: 12.34 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 3.64 Total: -20.63 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.13 Total: -82.38 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.77 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.43 kcal Total: -74.07 4.05 -70.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597917113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.792 kcal (2) G-P(sol) polarization free energy of solvation -74.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds