Wall clock time and date at job start Mon Mar 30 2020 00:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36011 * 117.00055 * 2 1 4 4 C 1.38506 * 120.08006 * 359.97438 * 3 2 1 5 5 C 1.38283 * 120.01451 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.18346 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.92086 * 180.02562 * 6 5 4 8 8 C 1.38223 * 120.15914 * 0.02562 * 6 5 4 9 9 C 1.38724 * 119.97972 * 359.68272 * 8 6 5 10 10 N 1.39967 * 120.09274 * 180.29301 * 9 8 6 11 11 C 1.46499 * 119.99780 * 0.29612 * 10 9 8 12 12 C 1.52996 * 109.47142 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.47356 * 305.00167 * 12 11 10 14 14 C 1.53001 * 109.47356 * 65.00007 * 12 11 10 15 15 C 1.53007 * 109.47081 * 185.00166 * 12 11 10 16 16 C 1.50700 * 109.47123 * 175.00129 * 15 12 11 17 17 H 1.08000 * 119.99830 * 359.97438 * 16 15 12 18 18 C 1.37874 * 120.00089 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00319 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00106 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46933 * 90.00132 * 20 18 16 22 22 H 1.48495 * 109.47533 * 210.00373 * 20 18 16 23 23 H 1.48500 * 109.47010 * 330.00401 * 20 18 16 24 24 H 1.09001 * 109.47103 * 300.00352 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99856 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99143 * 0.02629 * 4 3 2 28 28 H 1.08005 * 119.90762 * 180.02562 * 5 4 3 29 29 H 1.09005 * 109.47639 * 90.00036 * 7 6 5 30 30 H 1.08999 * 109.47289 * 210.00628 * 7 6 5 31 31 H 1.08999 * 109.47175 * 329.99944 * 7 6 5 32 32 H 1.07997 * 120.00831 * 179.97438 * 8 6 5 33 33 H 0.97000 * 120.00594 * 180.29765 * 10 9 8 34 34 H 1.09002 * 109.47515 * 300.00066 * 11 10 9 35 35 H 1.09003 * 109.46898 * 60.00217 * 11 10 9 36 36 H 1.08994 * 109.47089 * 179.97438 * 14 12 11 37 37 H 1.09002 * 109.47184 * 300.00348 * 14 12 11 38 38 H 1.09007 * 109.46419 * 59.99997 * 14 12 11 39 39 H 1.09000 * 109.46912 * 294.99831 * 15 12 11 40 40 H 1.08997 * 109.46884 * 55.00171 * 15 12 11 41 41 H 0.96992 * 120.00292 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2938 2.3745 -0.0005 5 6 1.9230 3.6059 -0.0011 6 6 3.3035 3.6811 -0.0005 7 6 3.9831 5.0261 -0.0005 8 6 4.0619 2.5255 0.0000 9 6 3.4377 1.2867 0.0067 10 7 4.2034 0.1150 0.0134 11 6 5.6661 0.1960 0.0200 12 6 6.2550 -1.2161 0.0259 13 1 5.8469 -1.7764 0.8671 14 6 5.8947 -1.9245 -1.2815 15 6 7.7771 -1.1334 0.1586 16 6 8.3463 -2.5227 0.2879 17 1 7.6883 -3.3790 0.2770 18 6 9.7070 -2.7006 0.4211 19 7 10.2039 -3.9131 0.5334 20 14 10.8451 -1.2195 0.4407 21 1 11.0206 -0.7486 1.8380 22 1 12.1649 -1.6018 -0.1223 23 1 10.2544 -0.1305 -0.3781 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2153 2.3194 -0.0005 28 1 1.3344 4.5115 -0.0011 29 1 4.1466 5.3507 1.0271 30 1 4.9414 4.9491 -0.5141 31 1 3.3528 5.7516 -0.5148 32 1 5.1402 2.5871 0.0000 33 1 3.7656 -0.7505 0.0137 34 1 6.0047 0.7267 -0.8698 35 1 5.9963 0.7315 0.9101 36 1 6.3147 -2.9303 -1.2774 37 1 4.8104 -1.9834 -1.3760 38 1 6.3029 -1.3640 -2.1227 39 1 8.1931 -0.6511 -0.7260 40 1 8.0335 -0.5518 1.0441 41 1 11.1611 -4.0382 0.6268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602489078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:23 Heat of formation + Delta-G solvation = -31.944665 kcal Electronic energy + Delta-G solvation = -19509.340822 eV Core-core repulsion = 16581.707969 eV Total energy + Delta-G solvation = -2927.632853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.20291 -37.75741 -36.74715 -34.14856 -32.19878 -31.59782 -29.33847 -27.92245 -27.38120 -26.15314 -25.46716 -22.82529 -21.31162 -21.08190 -19.26071 -18.01531 -16.99405 -16.52207 -15.82176 -15.75343 -14.83053 -14.56051 -14.21503 -14.18624 -13.89619 -13.67520 -13.51762 -13.08735 -12.77434 -12.31195 -12.17793 -12.05413 -11.95958 -11.83042 -11.41686 -11.04117 -10.97989 -10.93952 -10.76826 -10.45228 -10.09539 -9.79133 -9.67735 -9.57647 -9.11639 -8.53902 -8.33682 -6.97033 -6.04253 -4.02005 1.46271 1.67560 3.28147 3.30645 3.38364 3.41356 3.75909 3.88789 4.45031 4.80708 4.91094 4.99514 5.05588 5.21875 5.29065 5.32032 5.37842 5.41936 5.55854 5.59068 5.62609 5.70071 5.81964 5.89944 5.96965 6.14018 6.18836 6.32307 6.38267 6.39149 6.70395 6.74678 6.86162 6.88370 7.02606 7.20494 7.23240 7.40451 7.67395 7.79363 8.04933 8.53592 9.00438 9.58067 11.09047 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.004245 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.266450 B = 6594.833150 C = 7628.407939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.322 6.322 3 C 0.039 3.961 4 C -0.158 4.158 5 C -0.154 4.154 6 C -0.071 4.071 7 C -0.110 4.110 8 C -0.174 4.174 9 C 0.210 3.790 10 N -0.735 5.735 11 C 0.125 3.875 12 C -0.087 4.087 13 H 0.068 0.932 14 C -0.133 4.133 15 C -0.006 4.006 16 C -0.516 4.516 17 H 0.074 0.926 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.404 0.596 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.018 0.982 40 H 0.012 0.988 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 14.531 -1.670 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.236 6.236 3 C -0.009 4.009 4 C -0.178 4.178 5 C -0.175 4.175 6 C -0.072 4.072 7 C -0.167 4.167 8 C -0.198 4.198 9 C 0.105 3.895 10 N -0.364 5.364 11 C 0.001 3.999 12 C -0.106 4.106 13 H 0.086 0.914 14 C -0.191 4.191 15 C -0.044 4.044 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.240 0.760 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.031 0.969 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.714 14.249 -1.655 22.794 hybrid contribution 0.279 0.459 0.071 0.542 sum -17.435 14.708 -1.584 22.865 Atomic orbital electron populations 1.22931 0.78944 1.03435 1.00830 1.85987 1.20798 1.26738 1.90065 1.18440 0.90423 0.84736 1.07338 1.20891 0.99166 0.91925 1.05800 1.20459 0.93718 0.96545 1.06759 1.19542 0.93362 0.94742 0.99539 1.20729 1.00314 0.93581 1.02037 1.20396 0.99815 0.89704 1.09850 1.17270 0.87075 0.88168 0.97019 1.44839 1.05388 1.05304 1.80917 1.21624 0.78565 0.99343 1.00323 1.21233 0.98457 0.92517 0.98378 0.91384 1.21724 0.98551 1.02002 0.96788 1.19569 0.90236 0.98229 0.96351 1.21093 0.92623 0.91748 1.49886 0.90824 1.25017 0.98248 0.95564 0.94661 1.69907 1.12857 1.20884 1.50649 0.86806 0.80259 0.83733 0.78653 1.20325 1.21439 1.19000 0.93111 0.93126 0.88644 0.85982 0.86634 0.91445 0.91689 0.91889 0.85404 0.76029 0.92728 0.92708 0.91292 0.94714 0.93579 0.96367 0.96925 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.24 9.74 -19.78 -0.19 -4.43 16 3 C 0.04 0.54 6.70 -39.08 -0.26 0.27 16 4 C -0.16 -1.88 9.04 -39.47 -0.36 -2.24 16 5 C -0.15 -1.78 9.69 -39.56 -0.38 -2.16 16 6 C -0.07 -0.87 5.88 -104.62 -0.62 -1.48 16 7 C -0.11 -1.03 10.01 36.00 0.36 -0.67 16 8 C -0.17 -2.43 8.96 -39.41 -0.35 -2.78 16 9 C 0.21 3.15 6.67 -83.56 -0.56 2.59 16 10 N -0.74 -11.42 5.46 -58.49 -0.32 -11.74 16 11 C 0.13 2.06 4.31 -4.04 -0.02 2.05 16 12 C -0.09 -1.67 2.37 -90.62 -0.22 -1.89 16 13 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -2.46 8.88 37.16 0.33 -2.13 16 15 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 16 C -0.52 -14.37 8.96 -34.44 -0.31 -14.68 16 17 H 0.07 2.20 7.30 -52.49 -0.38 1.82 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 20 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 24 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.12 1.15 6.30 -52.49 -0.33 0.82 16 28 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.13 1.73 6.74 -52.49 -0.35 1.37 16 33 H 0.40 6.25 7.02 -40.82 -0.29 5.97 16 34 H 0.05 0.89 7.94 -51.93 -0.41 0.47 16 35 H 0.05 0.90 7.96 -51.93 -0.41 0.48 16 36 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 37 H 0.03 0.56 7.18 -51.93 -0.37 0.19 16 38 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 40 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -30.78 330.24 -7.61 -38.39 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.60 Total: 3.12 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -1.58 Total: -20.26 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.45 Total: -38.70 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.19 Total: -4.43 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.78 -7.61 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602489078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.444 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds