Wall clock time and date at job start Mon Mar 30 2020 00:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00080 * 2 1 4 4 C 1.38758 * 120.05486 * 0.24640 * 3 2 1 5 5 C 1.38119 * 119.94423 * 180.30356 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.46692 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.38172 * 120.05200 * 0.03764 * 7 6 5 10 10 C 1.50701 * 120.02651 * 179.97438 * 9 7 6 11 11 N 1.46899 * 109.47442 * 90.00393 * 10 9 7 12 12 C 1.46902 * 110.99934 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46760 * 179.97438 * 12 11 10 14 14 C 1.52993 * 109.46797 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47236 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99414 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00202 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99890 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99729 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46929 * 90.00450 * 19 17 15 21 21 H 1.48504 * 109.47155 * 209.99803 * 19 17 15 22 22 H 1.48493 * 109.47498 * 330.00309 * 19 17 15 23 23 H 1.09009 * 109.46903 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47429 * 300.00517 * 1 2 3 25 25 H 1.09004 * 109.46686 * 60.00811 * 1 2 3 26 26 H 1.07998 * 120.02572 * 0.04829 * 4 3 2 27 27 H 1.08002 * 119.97592 * 179.75244 * 5 4 3 28 28 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 29 29 H 1.09000 * 109.47471 * 89.99834 * 8 7 6 30 30 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 31 31 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 32 32 H 1.09006 * 109.46628 * 210.00277 * 10 9 7 33 33 H 1.09001 * 109.47332 * 329.99633 * 10 9 7 34 34 H 1.00904 * 110.99345 * 303.95183 * 11 10 9 35 35 H 1.08997 * 109.46933 * 299.99465 * 12 11 10 36 36 H 1.08999 * 109.47276 * 60.00012 * 12 11 10 37 37 H 1.09001 * 109.46993 * 300.00075 * 13 12 11 38 38 H 1.08999 * 109.46947 * 60.00140 * 13 12 11 39 39 H 1.09001 * 109.47204 * 299.99692 * 14 13 12 40 40 H 1.08999 * 109.47464 * 60.00204 * 14 13 12 41 41 H 0.97007 * 120.00042 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6047 -0.0012 6 6 3.3019 3.6757 -0.0015 7 6 4.0560 2.5172 -0.0006 8 6 5.5608 2.5982 -0.0004 9 6 3.4311 1.2848 0.0000 10 6 4.2537 0.0222 0.0005 11 7 4.5211 -0.3876 1.3856 12 6 5.3222 -1.6184 1.4251 13 6 5.5801 -2.0124 2.8809 14 6 6.4150 -3.2938 2.9222 15 6 6.6685 -3.6823 4.3560 16 1 6.2739 -3.0755 5.1577 17 6 7.4041 -4.8122 4.6444 18 7 7.8841 -5.5512 3.6682 19 14 7.7189 -5.2932 6.4217 20 1 6.6288 -6.1845 6.8938 21 1 9.0180 -6.0060 6.5190 22 1 7.7599 -4.0719 7.2653 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 0.2128 2.3203 0.0100 27 1 1.3339 4.5114 -0.0012 28 1 3.7922 4.6381 -0.0023 29 1 5.9235 2.6185 1.0273 30 1 5.9715 1.7286 -0.5134 31 1 5.8757 3.5060 -0.5149 32 1 3.7063 -0.7683 -0.5131 33 1 5.1977 0.2033 -0.5135 34 1 4.9708 0.3538 1.9015 35 1 4.7818 -2.4199 0.9217 36 1 6.2736 -1.4490 0.9210 37 1 6.1206 -1.2106 3.3840 38 1 4.6288 -2.1816 3.3855 39 1 5.8748 -4.0957 2.4189 40 1 7.3662 -3.1241 2.4178 41 1 8.4020 -6.3460 3.8711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602541192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:38 Heat of formation + Delta-G solvation = -52.288880 kcal Electronic energy + Delta-G solvation = -19222.177413 eV Core-core repulsion = 16293.662369 eV Total energy + Delta-G solvation = -2928.515044 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26111 -38.75295 -37.61413 -35.59107 -33.96021 -32.78742 -31.46574 -28.55976 -28.33808 -27.42985 -25.87486 -23.90336 -22.64609 -22.00415 -21.43307 -18.58992 -18.45338 -17.62773 -16.78401 -16.71173 -16.53804 -16.42481 -15.57974 -15.42632 -14.90366 -14.74061 -14.41967 -14.34411 -14.13757 -13.54218 -13.39656 -13.22685 -12.99551 -12.91447 -12.72867 -12.58217 -12.46552 -12.26899 -12.15973 -11.82115 -11.64052 -11.50716 -11.37285 -11.09256 -10.55192 -9.64479 -9.32011 -9.02650 -8.19761 -6.30993 0.35501 0.53457 1.40081 1.41999 1.53251 2.41472 2.46075 2.74813 3.13096 3.43368 3.81381 3.87113 4.09704 4.17060 4.22183 4.28092 4.38393 4.39994 4.40667 4.51680 4.62843 4.71118 4.72375 4.73873 4.82879 4.88130 4.98122 5.00802 5.10160 5.23760 5.27706 5.45249 5.51816 5.53066 5.66990 5.75070 5.85702 5.93103 6.05024 6.27414 6.49039 6.54772 6.85563 7.38093 8.92285 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027197 B = 0.003362 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.274903 B = 8325.522299 C = 8813.897929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.131 3.869 4 C -0.224 4.224 5 C -0.078 4.078 6 C -0.165 4.165 7 C -0.050 4.050 8 C -0.121 4.121 9 C -0.139 4.139 10 C 0.110 3.890 11 N -0.683 5.683 12 C 0.074 3.926 13 C -0.091 4.091 14 C 0.026 3.974 15 C -0.544 4.544 16 H 0.059 0.941 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.263 1.263 23 H 0.108 0.892 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.341 0.659 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.051 0.949 38 H 0.049 0.951 39 H -0.010 1.010 40 H -0.007 1.007 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 20.256 -10.032 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.085 3.915 4 C -0.243 4.243 5 C -0.096 4.096 6 C -0.183 4.183 7 C -0.050 4.050 8 C -0.177 4.177 9 C -0.140 4.140 10 C -0.018 4.018 11 N -0.314 5.314 12 C -0.055 4.055 13 C -0.129 4.129 14 C -0.012 4.012 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.187 1.187 23 H 0.127 0.873 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.163 0.837 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.159 0.841 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.008 0.992 40 H 0.011 0.989 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.592 19.562 -10.010 25.839 hybrid contribution 0.855 -0.398 0.432 1.037 sum -12.737 19.164 -9.579 24.925 Atomic orbital electron populations 1.23276 0.76961 1.05043 1.02095 1.86129 1.22987 1.27218 1.88314 1.19067 0.91968 0.84907 0.95593 1.21466 1.00911 0.92080 1.09818 1.21273 0.94796 0.97560 0.95928 1.21212 0.94106 0.98239 1.04788 1.19867 0.97017 0.91647 0.96508 1.20938 0.89953 1.03691 1.03149 1.19094 0.91084 0.95096 1.08755 1.20619 0.97328 0.94105 0.89763 1.60482 1.51146 1.06432 1.13359 1.21829 0.94559 0.92106 0.97011 1.21361 0.99061 0.97427 0.95010 1.18965 0.93857 0.92738 0.95610 1.21698 1.33154 1.09678 0.93649 0.92304 1.26008 0.95399 0.96346 1.02193 1.70101 1.36879 1.16603 1.33839 0.85417 0.77649 0.78591 0.79209 1.19778 1.20559 1.18701 0.87347 0.91987 0.91317 0.83724 0.83069 0.83693 0.90492 0.91674 0.89315 0.91716 0.93496 0.84114 0.92404 0.95543 0.93021 0.93267 0.99154 0.98872 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -8.92 9.54 -92.40 -0.88 -9.80 16 3 C 0.13 3.36 6.66 22.51 0.15 3.51 16 4 C -0.22 -4.45 9.04 22.37 0.20 -4.25 16 5 C -0.08 -1.31 10.04 22.25 0.22 -1.09 16 6 C -0.17 -2.96 9.70 22.28 0.22 -2.75 16 7 C -0.05 -1.08 5.88 -19.88 -0.12 -1.19 16 8 C -0.12 -2.16 9.60 71.23 0.68 -1.47 16 9 C -0.14 -3.66 5.41 -19.77 -0.11 -3.77 16 10 C 0.11 3.18 5.18 85.56 0.44 3.62 16 11 N -0.68 -22.24 6.49 -517.91 -3.36 -25.60 16 12 C 0.07 2.77 5.69 86.31 0.49 3.26 16 13 C -0.09 -4.00 5.41 30.59 0.17 -3.84 16 14 C 0.03 1.43 4.97 29.85 0.15 1.58 16 15 C -0.54 -32.18 9.11 25.60 0.23 -31.95 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 18 N -0.93 -58.23 13.29 21.45 0.28 -57.95 16 19 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 23 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 24 H 0.06 0.92 7.65 -2.39 -0.02 0.91 16 25 H 0.07 0.89 7.67 -2.38 -0.02 0.87 16 26 H 0.15 2.15 6.30 -2.91 -0.02 2.14 16 27 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 28 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.25 5.94 -2.38 -0.01 1.23 16 31 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 32 H 0.06 2.04 7.53 -2.38 -0.02 2.02 16 33 H 0.05 1.25 5.95 -2.39 -0.01 1.23 16 34 H 0.34 10.35 8.72 -89.69 -0.78 9.57 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -70.01 337.29 2.60 -67.41 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.22 Total: 15.11 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 4.31 Total: -36.52 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -3.08 Total: -83.55 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.88 Total: -9.80 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.01 2.60 -67.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602541192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.120 kcal (2) G-P(sol) polarization free energy of solvation -70.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds