Wall clock time and date at job start Mon Mar 30 2020 00:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47576 * 2 1 4 4 C 1.38287 * 119.97039 * 270.02584 * 3 2 1 5 5 C 1.38241 * 120.10985 * 180.02562 * 4 3 2 6 6 C 1.38168 * 120.05451 * 359.67541 * 5 4 3 7 7 C 1.38709 * 119.94274 * 0.57809 * 6 5 4 8 8 O 1.35903 * 120.05305 * 179.72444 * 7 6 5 9 9 C 1.42897 * 117.00184 * 359.72228 * 8 7 6 10 10 C 1.53006 * 109.46881 * 180.02562 * 9 8 7 11 11 N 1.46898 * 109.47006 * 64.99925 * 10 9 8 12 12 C 1.46903 * 110.99673 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47201 * 35.00469 * 12 11 10 14 14 C 1.53003 * 109.47458 * 274.99797 * 12 11 10 15 15 C 1.50708 * 109.46830 * 155.00071 * 12 11 10 16 16 H 1.07999 * 120.00002 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00015 * 180.02562 * 15 12 11 18 18 N 1.31519 * 120.00060 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00249 * 180.02562 * 17 15 12 20 20 H 1.48508 * 109.47039 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47583 * 119.99718 * 19 17 15 22 22 H 1.48501 * 109.47237 * 240.00325 * 19 17 15 23 23 C 1.38117 * 119.97249 * 89.99669 * 3 2 1 24 24 H 1.08999 * 109.47174 * 300.00308 * 1 2 3 25 25 H 1.09005 * 109.46970 * 59.99857 * 1 2 3 26 26 H 1.08997 * 109.47731 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46940 * 239.99766 * 2 1 3 28 28 H 1.08999 * 109.47014 * 120.00580 * 2 1 3 29 29 H 1.07997 * 119.94741 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.97548 * 179.97438 * 5 4 3 31 31 H 1.08004 * 120.02738 * 180.29822 * 6 5 4 32 32 H 1.08992 * 109.47198 * 60.00388 * 9 8 7 33 33 H 1.08997 * 109.46749 * 300.00150 * 9 8 7 34 34 H 1.09001 * 109.47002 * 184.99708 * 10 9 8 35 35 H 1.08993 * 109.46955 * 305.00145 * 10 9 8 36 36 H 1.00895 * 111.00438 * 303.95603 * 11 10 9 37 37 H 1.08994 * 109.47006 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47007 * 300.00238 * 14 12 11 39 39 H 1.08996 * 109.46579 * 60.00291 * 14 12 11 40 40 H 0.96997 * 120.00033 * 179.97438 * 18 17 15 41 41 H 1.08010 * 120.02677 * 0.02736 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0723 -1.1980 5 6 2.7236 3.3754 -1.2013 6 6 2.9499 4.0324 -0.0071 7 6 2.7252 3.3794 1.1958 8 8 2.9524 4.0216 2.3718 9 6 3.4281 5.3669 2.2949 10 6 3.6245 5.9199 3.7079 11 7 4.6905 5.1686 4.3840 12 6 4.9077 5.6736 5.7463 13 1 3.9556 5.9886 6.1732 14 6 5.8661 6.8655 5.7018 15 6 5.5032 4.5818 6.5977 16 1 5.7008 3.6103 6.1694 17 6 5.7955 4.8233 7.9232 18 7 5.5553 6.0066 8.4446 19 14 6.5342 3.4704 8.9783 20 1 6.7062 2.2429 8.1603 21 1 7.8550 3.9107 9.4947 22 1 5.6280 3.1815 10.1187 23 6 2.2624 2.0714 1.1965 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 2.0817 1.5619 -2.1325 30 1 2.9027 3.8820 -2.1381 31 1 3.3058 5.0522 -0.0103 32 1 2.7008 5.9796 1.7624 33 1 4.3789 5.3861 1.7622 34 1 3.9018 6.9725 3.6509 35 1 2.6961 5.8186 4.2699 36 1 4.4871 4.1804 4.3924 37 1 6.0275 7.2397 6.7127 38 1 6.8182 6.5503 5.2750 39 1 5.4354 7.6550 5.0861 40 1 5.7606 6.1763 9.3773 41 1 2.0827 1.5621 2.1319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:05 Heat of formation + Delta-G solvation = -30.764616 kcal Electronic energy + Delta-G solvation = -19159.712643 eV Core-core repulsion = 16232.130961 eV Total energy + Delta-G solvation = -2927.581682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10949 -37.90267 -35.79222 -33.92454 -32.74080 -30.74895 -29.54609 -29.03380 -26.79991 -25.15294 -24.12811 -22.49837 -22.14635 -20.41596 -19.73847 -17.78415 -16.56407 -16.04758 -15.88386 -15.73107 -14.91099 -14.67964 -14.16839 -14.08475 -13.59461 -13.51181 -13.30278 -13.01676 -12.69247 -12.19086 -11.91536 -11.88896 -11.65184 -11.41311 -11.16592 -11.09351 -10.88240 -10.83339 -10.70086 -10.56152 -10.21913 -10.11940 -9.86394 -8.83676 -8.80324 -8.46561 -8.11502 -7.27985 -6.01418 -4.07340 1.29465 1.47414 3.30256 3.37275 3.37872 3.42971 3.74358 4.41892 4.62104 4.75441 4.92168 5.04021 5.09755 5.16963 5.24060 5.25663 5.30610 5.41069 5.50977 5.52852 5.54649 5.72551 5.80289 5.82205 5.98245 6.04626 6.18054 6.27302 6.35687 6.42935 6.56764 6.80379 6.87011 7.13249 7.22601 7.49159 7.58137 7.80233 7.90971 8.28393 8.39821 8.68520 9.03515 9.58587 11.05154 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.003697 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.809840 B = 7572.257832 C = 8462.956324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.046 4.046 4 C -0.165 4.165 5 C -0.079 4.079 6 C -0.217 4.217 7 C 0.145 3.855 8 O -0.309 6.309 9 C 0.063 3.937 10 C 0.062 3.938 11 N -0.688 5.688 12 C 0.209 3.791 13 H 0.001 0.999 14 C -0.125 4.125 15 C -0.516 4.516 16 H 0.061 0.939 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.154 4.154 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.030 0.970 36 H 0.338 0.662 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.003 0.997 40 H 0.260 0.740 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.505 -6.364 -18.244 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.046 4.046 4 C -0.183 4.183 5 C -0.097 4.097 6 C -0.235 4.235 7 C 0.099 3.901 8 O -0.222 6.222 9 C -0.012 4.012 10 C -0.069 4.069 11 N -0.320 5.320 12 C 0.102 3.898 13 H 0.019 0.981 14 C -0.183 4.183 15 C -0.555 4.555 16 H 0.079 0.921 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.173 4.173 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.156 0.844 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.022 0.978 40 H 0.070 0.930 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.003 -5.938 -18.124 20.683 hybrid contribution -0.256 -0.664 0.913 1.157 sum -8.258 -6.602 -17.211 20.200 Atomic orbital electron populations 1.21742 0.94647 1.01659 1.02332 1.20554 0.96230 0.92462 1.03001 1.19646 0.96816 0.95801 0.92321 1.20844 1.04710 0.95470 0.97325 1.20881 0.97030 0.94496 0.97273 1.21280 1.08570 1.01391 0.92292 1.19056 0.93928 0.92094 0.85071 1.86123 1.80143 1.28363 1.27568 1.23053 0.98350 0.79919 0.99887 1.21962 0.94770 0.98610 0.91515 1.60777 1.41681 1.07547 1.22030 1.19127 0.94395 0.93934 0.82334 0.98106 1.21724 0.98619 0.96506 1.01473 1.21312 1.41814 0.97719 0.94632 0.92127 1.24923 0.95619 0.95684 0.97853 1.69908 1.48454 1.21073 1.13593 0.86459 0.78793 0.82078 0.80194 1.19714 1.20975 1.21089 1.20322 1.05441 0.92898 0.98622 0.92364 0.92610 0.92411 0.90951 0.90758 0.86360 0.86098 0.85524 0.92462 0.91258 0.89830 0.95182 0.84402 0.90051 0.94938 0.97776 0.93008 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.15 0.37 -0.80 16 2 C -0.09 -0.75 6.06 -27.89 -0.17 -0.92 16 3 C -0.05 -0.52 5.13 -104.65 -0.54 -1.06 16 4 C -0.17 -1.76 9.70 -39.56 -0.38 -2.14 16 5 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 6 C -0.22 -2.75 9.04 -39.43 -0.36 -3.10 16 7 C 0.14 2.12 6.69 -39.22 -0.26 1.86 16 8 O -0.31 -5.09 9.66 -19.44 -0.19 -5.28 16 9 C 0.06 0.95 5.08 37.16 0.19 1.13 16 10 C 0.06 1.11 5.90 -3.82 -0.02 1.09 16 11 N -0.69 -15.18 6.30 -107.94 -0.68 -15.86 16 12 C 0.21 5.42 2.60 -68.86 -0.18 5.24 16 13 H 0.00 0.04 7.80 -51.93 -0.41 -0.37 16 14 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 15 C -0.52 -14.50 8.59 -34.44 -0.30 -14.80 16 16 H 0.06 1.69 7.62 -52.49 -0.40 1.30 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -25.77 11.32 55.43 0.63 -25.15 16 19 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.15 -2.08 9.64 -39.44 -0.38 -2.46 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.55 8.09 -51.92 -0.42 0.13 16 28 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.13 1.44 6.30 -52.48 -0.33 1.11 16 32 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 33 H 0.07 1.02 7.67 -51.93 -0.40 0.62 16 34 H 0.08 1.44 7.44 -51.93 -0.39 1.06 16 35 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 36 H 0.34 7.61 7.78 -39.29 -0.31 7.30 16 37 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -29.77 336.06 -9.06 -38.83 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.68 Total: 4.21 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.18 Total: -18.40 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.05 Total: -41.00 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.19 Total: -5.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.77 -9.06 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.064 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds