Wall clock time and date at job start Mon Mar 30 2020 00:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38285 * 119.97244 * 2 1 4 4 C 1.38248 * 120.11348 * 179.97438 * 3 2 1 5 5 C 1.38162 * 120.05073 * 359.77598 * 4 3 2 6 6 C 1.50706 * 120.02709 * 180.24966 * 5 4 3 7 7 C 1.38710 * 119.94820 * 0.52743 * 5 4 3 8 8 O 1.35899 * 120.05808 * 179.72530 * 7 5 4 9 9 C 1.42901 * 116.99859 * 179.72420 * 8 7 5 10 10 C 1.53001 * 109.46841 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.47173 * 65.00225 * 10 9 8 12 12 C 1.46904 * 111.00152 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.46956 * 324.99875 * 12 11 10 14 14 C 1.53000 * 109.46945 * 84.99616 * 12 11 10 15 15 C 1.50693 * 109.46986 * 204.99793 * 12 11 10 16 16 H 1.08001 * 120.00156 * 354.36414 * 15 12 11 17 17 C 1.37883 * 119.99975 * 174.36110 * 15 12 11 18 18 N 1.31514 * 119.99792 * 156.55708 * 17 15 12 19 19 Si 1.86795 * 120.00000 * 336.83419 * 17 15 12 20 20 H 1.48494 * 109.47243 * 179.72421 * 19 17 15 21 21 H 1.48501 * 109.46953 * 299.72341 * 19 17 15 22 22 H 1.48500 * 109.47267 * 59.72084 * 19 17 15 23 23 C 1.38125 * 119.97016 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46618 * 269.97300 * 1 2 3 25 25 H 1.08997 * 109.47106 * 29.96919 * 1 2 3 26 26 H 1.08998 * 109.47082 * 149.97373 * 1 2 3 27 27 H 1.08001 * 119.94405 * 0.02562 * 3 2 1 28 28 H 1.07994 * 119.97283 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47031 * 270.27832 * 6 5 4 30 30 H 1.08996 * 109.46777 * 30.27225 * 6 5 4 31 31 H 1.08995 * 109.47439 * 150.27748 * 6 5 4 32 32 H 1.09002 * 109.47406 * 60.00194 * 9 8 7 33 33 H 1.08993 * 109.47269 * 299.99458 * 9 8 7 34 34 H 1.08999 * 109.47702 * 305.00011 * 10 9 8 35 35 H 1.09000 * 109.47086 * 184.99901 * 10 9 8 36 36 H 1.00892 * 110.99818 * 56.04271 * 11 10 9 37 37 H 1.08996 * 109.47340 * 293.06818 * 14 12 11 38 38 H 1.09000 * 109.46855 * 53.06982 * 14 12 11 39 39 H 1.08997 * 109.46527 * 173.06766 * 14 12 11 40 40 H 0.96996 * 119.99955 * 355.20631 * 18 17 15 41 41 H 1.07992 * 120.03050 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0071 0.0057 6 6 5.7822 0.0115 0.0120 7 6 3.5846 -1.1958 -0.0006 8 8 4.2658 -2.3718 -0.0012 9 6 3.4892 -3.5713 -0.0017 10 6 4.4230 -4.7833 -0.0029 11 7 5.1860 -4.8149 1.2521 12 6 6.0950 -5.9684 1.2867 13 1 5.6282 -6.8141 0.7817 14 6 7.4022 -5.6091 0.5775 15 6 6.3851 -6.3364 2.7189 16 1 6.0138 -5.7166 3.5216 17 6 7.1247 -7.4645 3.0047 18 7 7.7665 -7.5576 4.1488 19 14 7.2214 -8.8571 1.7634 20 1 8.0777 -9.9432 2.3038 21 1 5.8576 -9.3845 1.5041 22 1 7.8055 -8.3505 0.4956 23 6 2.1970 -1.1966 -0.0005 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6565 2.1324 0.0004 28 1 4.1176 2.1382 0.0010 29 1 6.1498 0.0155 -1.0142 30 1 6.1407 0.9010 0.5298 31 1 6.1460 -0.8789 0.5247 32 1 2.8605 -3.5968 -0.8918 33 1 2.8605 -3.5976 0.8882 34 1 5.1115 -4.7109 -0.8449 35 1 3.8338 -5.6959 -0.0929 36 1 4.5690 -4.8170 2.0503 37 1 7.2106 -5.4628 -0.4854 38 1 7.8061 -4.6908 1.0037 39 1 8.1211 -6.4178 0.7093 40 1 7.7771 -6.8058 4.7615 41 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:16 Heat of formation + Delta-G solvation = -29.288961 kcal Electronic energy + Delta-G solvation = -19507.237788 eV Core-core repulsion = 16579.720095 eV Total energy + Delta-G solvation = -2927.517693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21077 -37.75605 -35.98433 -33.82398 -32.71420 -30.68234 -29.71098 -29.22586 -27.21882 -24.87644 -24.64177 -23.02446 -21.36855 -20.76175 -19.67147 -17.62644 -17.44277 -16.08219 -15.84949 -15.55494 -14.75157 -14.32721 -14.24738 -13.80967 -13.49193 -13.31997 -13.19608 -12.95623 -12.87357 -12.58448 -12.23850 -12.04005 -11.87251 -11.62229 -11.41475 -11.27199 -11.08684 -10.87436 -10.66788 -10.49225 -10.37331 -10.00415 -9.75812 -8.95176 -8.71800 -8.21660 -7.96659 -7.48762 -6.48250 -4.06781 1.28559 1.47361 3.38121 3.39485 3.41532 3.60159 3.71178 4.49279 4.66306 4.75241 4.88905 4.97093 5.10930 5.15248 5.20538 5.23234 5.32408 5.41733 5.52103 5.53801 5.64249 5.68313 5.73043 5.82513 5.92037 5.95998 6.13736 6.32047 6.34927 6.46960 6.51712 6.57615 6.73151 6.82780 6.85825 6.94047 7.49453 7.58868 7.76362 8.12929 8.38816 8.49464 8.95200 9.59183 10.89266 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031868 B = 0.003821 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.425188 B = 7326.058011 C = 7649.783164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 C -0.164 4.164 4 C -0.082 4.082 5 C -0.123 4.123 6 C -0.106 4.106 7 C 0.141 3.859 8 O -0.288 6.288 9 C 0.066 3.934 10 C 0.056 3.944 11 N -0.673 5.673 12 C 0.191 3.809 13 H -0.008 1.008 14 C -0.131 4.131 15 C -0.612 4.612 16 H 0.061 0.939 17 C 0.038 3.962 18 N -0.897 5.897 19 Si 1.039 2.961 20 H -0.285 1.285 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.212 4.212 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.335 0.665 37 H 0.017 0.983 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.270 0.730 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 14.688 -10.835 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.183 4.183 4 C -0.100 4.100 5 C -0.124 4.124 6 C -0.163 4.163 7 C 0.094 3.906 8 O -0.200 6.200 9 C -0.010 4.010 10 C -0.074 4.074 11 N -0.305 5.305 12 C 0.082 3.918 13 H 0.009 0.991 14 C -0.189 4.189 15 C -0.650 4.650 16 H 0.079 0.921 17 C -0.168 4.168 18 N -0.530 5.530 19 Si 0.867 3.133 20 H -0.210 1.210 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.231 4.231 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.153 0.847 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.874 13.534 -11.276 20.702 hybrid contribution -1.556 0.757 0.417 1.780 sum -12.430 14.291 -10.859 21.832 Atomic orbital electron populations 1.20789 0.91342 1.02577 1.02319 1.19645 0.95754 0.92620 0.97653 1.20829 0.94092 0.97235 1.06096 1.20832 0.93927 0.96756 0.98482 1.19297 0.96713 0.90336 1.06069 1.20614 0.90413 1.03152 1.02087 1.18954 0.90213 0.86518 0.94887 1.86260 1.34857 1.11543 1.87349 1.22936 0.94175 0.83471 1.00423 1.22028 0.95765 0.92984 0.96586 1.60565 1.21755 1.46495 1.01674 1.19398 0.89356 0.86006 0.97051 0.99097 1.22033 0.99290 1.01150 0.96469 1.22029 1.39099 1.12927 0.90929 0.92135 1.25669 0.91788 0.99829 0.99540 1.70835 1.35618 1.35448 1.11086 0.84113 0.76691 0.76592 0.75949 1.21037 1.21255 1.20278 1.21114 0.93032 0.98756 1.10152 0.91128 0.91564 0.91688 0.86341 0.85706 0.91723 0.92073 0.90314 0.92400 0.92336 0.90579 0.93968 0.84712 0.96439 0.93110 0.93403 0.92001 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.06 -0.65 5.88 -104.65 -0.62 -1.26 16 3 C -0.16 -1.80 9.70 -39.56 -0.38 -2.19 16 4 C -0.08 -0.95 9.70 -39.61 -0.38 -1.34 16 5 C -0.12 -1.70 5.89 -104.47 -0.62 -2.31 16 6 C -0.11 -1.36 9.79 36.01 0.35 -1.01 16 7 C 0.14 2.08 6.66 -39.22 -0.26 1.82 16 8 O -0.29 -4.70 9.13 -19.42 -0.18 -4.88 16 9 C 0.07 0.94 5.02 37.16 0.19 1.13 16 10 C 0.06 0.95 5.87 -3.82 -0.02 0.93 16 11 N -0.67 -14.17 6.25 -107.95 -0.67 -14.84 16 12 C 0.19 4.61 2.20 -68.87 -0.15 4.45 16 13 H -0.01 -0.20 6.37 -51.93 -0.33 -0.53 16 14 C -0.13 -3.05 9.09 37.16 0.34 -2.71 16 15 C -0.61 -17.25 8.77 -34.44 -0.30 -17.55 16 16 H 0.06 1.84 7.92 -52.49 -0.42 1.42 16 17 C 0.04 1.11 5.19 -17.82 -0.09 1.01 16 18 N -0.90 -27.49 13.70 55.43 0.76 -26.73 16 19 Si 1.04 25.13 26.45 -169.99 -4.50 20.63 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.28 6.15 56.52 0.35 -5.93 16 23 C -0.21 -2.74 8.69 -39.43 -0.34 -3.08 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.08 1.19 7.53 -51.93 -0.39 0.80 16 32 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 33 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 34 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 35 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.34 7.07 8.26 -39.30 -0.32 6.75 16 37 H 0.02 0.35 7.64 -51.93 -0.40 -0.05 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.14 5.48 -51.93 -0.28 0.86 16 40 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16 41 H 0.13 1.44 6.30 -52.49 -0.33 1.11 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -30.92 332.32 -8.17 -39.09 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.66 Total: 4.41 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -1.93 Total: -22.69 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.08 Total: -41.57 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.18 Total: -4.88 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.50 Total: 20.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.92 -8.17 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.804 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds