Wall clock time and date at job start Mon Mar 30 2020 00:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 113.37885 * 2 1 4 4 C 1.53506 * 114.16885 * 133.07705 * 2 1 3 5 5 N 1.47479 * 87.92968 * 87.62742 * 4 2 1 6 6 C 1.46901 * 110.99966 * 138.70623 * 5 4 2 7 7 C 1.52997 * 109.47819 * 76.48213 * 6 5 4 8 8 C 1.52999 * 109.47438 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46996 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99936 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99638 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00495 * 359.97438 * 11 9 8 13 13 Si 1.86810 * 119.99751 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47059 * 180.02562 * 13 11 9 15 15 H 1.48496 * 109.47086 * 59.99687 * 13 11 9 16 16 H 1.48503 * 109.46954 * 299.99879 * 13 11 9 17 17 C 1.47478 * 87.83744 * 27.00976 * 5 4 2 18 18 H 1.08997 * 113.47120 * 218.22120 * 17 5 4 19 19 C 1.50698 * 113.47576 * 87.75590 * 17 5 4 20 20 C 1.34517 * 125.78944 * 131.90614 * 19 17 5 21 21 C 1.41381 * 106.84179 * 179.97438 * 20 19 17 22 22 C 1.34512 * 106.84094 * 0.02562 * 21 20 19 23 23 O 1.34296 * 125.79192 * 311.60085 * 19 17 5 24 24 H 1.08993 * 109.47350 * 306.42476 * 1 2 3 25 25 H 1.09006 * 109.46824 * 66.42705 * 1 2 3 26 26 H 1.09001 * 109.46582 * 186.42140 * 1 2 3 27 27 H 1.09000 * 109.47004 * 173.56999 * 3 2 1 28 28 H 1.08993 * 109.47604 * 293.57252 * 3 2 1 29 29 H 1.09001 * 109.47378 * 53.57431 * 3 2 1 30 30 H 1.08997 * 113.48143 * 332.85909 * 4 2 1 31 31 H 1.09003 * 113.52990 * 202.40171 * 4 2 1 32 32 H 1.09002 * 109.47040 * 316.48137 * 6 5 4 33 33 H 1.09000 * 109.47130 * 196.48716 * 6 5 4 34 34 H 1.09002 * 109.46877 * 59.99824 * 7 6 5 35 35 H 1.09000 * 109.47181 * 300.00472 * 7 6 5 36 36 H 1.08997 * 109.46585 * 60.00575 * 8 7 6 37 37 H 1.08991 * 109.47504 * 300.00157 * 8 7 6 38 38 H 0.97001 * 119.99614 * 0.02562 * 12 11 9 39 39 H 1.08004 * 126.57353 * 0.03849 * 20 19 17 40 40 H 1.08000 * 126.57593 * 180.02562 * 21 20 19 41 41 H 1.08003 * 125.78860 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1372 1.4044 0.0000 4 6 2.1586 -0.9565 1.0230 5 7 2.0811 -2.0160 0.0000 6 6 3.2986 -2.8379 0.0001 7 6 3.2646 -3.8000 1.1892 8 6 4.5324 -4.6564 1.1889 9 6 4.4991 -5.6036 2.3606 10 1 3.6576 -5.5958 3.0376 11 6 5.5429 -6.4801 2.5684 12 7 6.5674 -6.4900 1.7438 13 14 5.5013 -7.6547 4.0204 14 1 6.7324 -8.4850 4.0208 15 1 4.3101 -8.5346 3.9112 16 1 5.4285 -6.8775 5.2837 17 6 2.1587 -0.9565 -1.0230 18 1 1.5248 -1.1428 -1.8899 19 6 3.5705 -0.5886 -1.4003 20 6 4.0434 -0.4666 -2.6537 21 6 5.4071 -0.1101 -2.5441 22 6 5.6862 -0.0360 -1.2303 23 8 4.5685 -0.3212 -0.5423 24 1 -0.3633 0.6101 0.8268 25 1 -0.3633 0.4110 -0.9420 26 1 -0.3632 -1.0213 0.1149 27 1 3.2187 1.3326 0.1151 28 1 1.9042 1.9010 -0.9418 29 1 1.7213 1.9801 0.8269 30 1 1.5247 -1.1428 1.8899 31 1 3.1797 -0.6911 1.2968 32 1 4.1730 -2.1920 0.0802 33 1 3.3521 -3.4082 -0.9273 34 1 2.3902 -4.4459 1.1091 35 1 3.2111 -3.2297 2.1166 36 1 5.4069 -4.0108 1.2689 37 1 4.5854 -5.2268 0.2616 38 1 6.5888 -5.8803 0.9896 39 1 3.4876 -0.6121 -3.5682 40 1 6.0931 0.0685 -3.3589 41 1 6.6452 0.2146 -0.8014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602924714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:40 Heat of formation + Delta-G solvation = 33.600879 kcal Electronic energy + Delta-G solvation = -20461.957845 eV Core-core repulsion = 17537.167261 eV Total energy + Delta-G solvation = -2924.790585 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.91968 -40.33137 -34.83304 -33.04355 -33.00935 -30.95287 -29.97302 -27.48305 -26.84357 -25.64062 -23.91785 -21.92360 -21.69882 -20.78569 -20.08132 -18.78159 -16.84599 -16.58465 -16.27228 -15.49935 -15.31561 -15.02960 -14.11589 -13.89905 -13.68827 -13.16806 -13.01389 -12.85979 -12.75098 -12.59863 -12.36315 -12.27727 -12.02298 -11.55567 -11.49914 -11.09261 -10.76208 -10.56582 -10.51259 -10.21875 -10.09299 -9.93458 -9.73855 -9.64147 -8.84011 -8.48403 -8.36421 -8.27512 -6.31276 -3.99388 1.70916 2.61096 2.96101 3.46643 3.49135 3.67701 4.10946 4.19053 4.55450 4.59150 4.84215 5.02266 5.04986 5.11028 5.18679 5.33280 5.46140 5.50625 5.54362 5.66253 5.71179 5.75245 5.80706 5.85217 5.88710 5.93308 5.97063 6.05398 6.11519 6.27019 6.34751 6.41582 6.49530 6.63393 6.75038 7.04152 7.11724 7.28656 7.48373 7.61441 8.28699 8.52165 8.94067 9.72906 11.09325 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.004923 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.507339 B = 5686.344583 C = 6506.701933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.085 4.085 3 C -0.137 4.137 4 C 0.005 3.995 5 N -0.455 5.455 6 C 0.015 3.985 7 C -0.093 4.093 8 C 0.011 3.989 9 C -0.599 4.599 10 H 0.048 0.952 11 C 0.013 3.987 12 N -0.915 5.915 13 Si 1.069 2.931 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.288 1.288 17 C 0.105 3.895 18 H 0.118 0.882 19 C -0.008 4.008 20 C -0.202 4.202 21 C -0.215 4.215 22 C -0.040 4.040 23 O -0.168 6.168 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.003 0.997 37 H 0.005 0.995 38 H 0.268 0.732 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 17.407 -7.307 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.086 4.086 3 C -0.195 4.195 4 C -0.124 4.124 5 N -0.176 5.176 6 C -0.113 4.113 7 C -0.131 4.131 8 C -0.027 4.027 9 C -0.637 4.637 10 H 0.066 0.934 11 C -0.190 4.190 12 N -0.551 5.551 13 Si 0.897 3.103 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.215 1.215 17 C -0.005 4.005 18 H 0.136 0.864 19 C -0.059 4.059 20 C -0.222 4.222 21 C -0.234 4.234 22 C -0.108 4.108 23 O -0.064 6.064 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.078 0.922 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.743 15.650 -6.218 18.535 hybrid contribution 0.188 1.640 -1.130 2.000 sum -7.555 17.290 -7.347 20.249 Atomic orbital electron populations 1.21466 0.91742 1.02947 1.01587 1.22104 0.96467 0.94132 0.95891 1.21755 1.01050 0.94978 1.01699 1.24029 1.00941 0.90874 0.96543 1.69051 1.35594 1.10155 1.02777 1.22977 0.90382 0.96882 1.01049 1.21402 1.00535 0.96441 0.94738 1.19177 0.92093 0.94333 0.97074 1.22057 1.07699 1.21660 1.12313 0.93374 1.25860 0.92650 0.98496 1.02003 1.70779 1.30822 1.38360 1.15159 0.83551 0.75983 0.75908 0.74841 1.20782 1.21430 1.21487 1.21974 0.87179 0.93141 0.98166 0.86397 1.22420 0.90496 1.04586 0.88411 1.21536 0.95548 1.07812 0.97276 1.21770 0.96667 1.08070 0.96897 1.24102 0.90437 1.04763 0.91499 1.84181 1.17752 1.67138 1.37302 0.92190 0.92437 0.91106 0.91989 0.92465 0.92242 0.89721 0.90564 0.92939 0.91402 0.92621 0.93444 0.97830 0.97639 0.92212 0.83684 0.83600 0.78317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.20 37.16 0.34 -0.83 16 2 C -0.09 -0.99 1.49 -153.98 -0.23 -1.22 16 3 C -0.14 -1.44 8.59 37.16 0.32 -1.12 16 4 C 0.00 0.07 5.95 -7.55 -0.04 0.03 16 5 N -0.46 -7.26 6.17 -237.86 -1.47 -8.72 16 6 C 0.01 0.28 4.22 -3.82 -0.02 0.26 16 7 C -0.09 -2.10 5.29 -26.73 -0.14 -2.24 16 8 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 9 C -0.60 -17.89 9.11 -34.44 -0.31 -18.20 16 10 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 11 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 12 N -0.91 -28.98 13.65 55.43 0.76 -28.22 16 13 Si 1.07 26.10 29.90 -169.99 -5.08 21.01 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.11 1.39 4.15 -72.59 -0.30 1.09 16 18 H 0.12 1.40 8.12 -51.93 -0.42 0.98 16 19 C -0.01 -0.11 3.67 -35.62 -0.13 -0.24 16 20 C -0.20 -2.58 10.81 -39.70 -0.43 -3.01 16 21 C -0.21 -2.60 10.91 -39.70 -0.43 -3.03 16 22 C -0.04 -0.50 12.09 29.42 0.36 -0.15 16 23 O -0.17 -2.46 5.82 5.72 0.03 -2.42 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 27 H 0.06 0.73 5.94 -51.93 -0.31 0.43 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 31 H 0.08 1.19 6.29 -51.93 -0.33 0.87 16 32 H 0.05 1.03 4.81 -51.93 -0.25 0.78 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.06 7.76 -51.93 -0.40 0.66 16 36 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 37 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 38 H 0.27 8.48 7.22 -40.82 -0.29 8.19 16 39 H 0.15 1.57 8.06 -52.48 -0.42 1.14 16 40 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.20 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -32.72 325.06 -8.78 -41.50 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.68 Total: 0.15 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -1.24 Total: -28.19 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.71 Total: -36.95 kcal Atomic # 8 Polarization: -2.46 SS G_CDS: 0.03 Total: -2.42 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.08 Total: 21.01 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.72 -8.78 -41.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602924714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.097 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds