Wall clock time and date at job start Mon Mar 30 2020 00:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 113.00705 * 2 1 4 4 C 1.53928 * 113.73411 * 228.36317 * 2 1 3 5 5 N 1.47957 * 86.18224 * 221.92111 * 4 2 1 6 6 C 1.46905 * 110.99888 * 137.58373 * 5 4 2 7 7 C 1.52991 * 109.47039 * 70.64038 * 6 5 4 8 8 C 1.53002 * 109.47013 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47500 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99845 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00510 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00390 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47469 * 59.99436 * 13 11 9 15 15 H 1.48503 * 109.47279 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46881 * 299.99388 * 13 11 9 17 17 C 1.47960 * 90.76311 * 24.68751 * 5 4 2 18 18 H 1.08995 * 113.85529 * 89.63819 * 17 5 4 19 19 C 1.50696 * 113.75878 * 220.99398 * 17 5 4 20 20 C 1.34515 * 125.78542 * 196.56199 * 19 17 5 21 21 C 1.41388 * 106.83843 * 179.97438 * 20 19 17 22 22 C 1.34506 * 106.83998 * 359.97438 * 21 20 19 23 23 O 1.34304 * 125.79125 * 16.51963 * 19 17 5 24 24 H 1.09005 * 109.46997 * 288.36729 * 1 2 3 25 25 H 1.08997 * 109.47258 * 48.36384 * 1 2 3 26 26 H 1.08996 * 109.47126 * 168.36667 * 1 2 3 27 27 H 1.09007 * 109.46465 * 191.63728 * 3 2 1 28 28 H 1.08992 * 109.47324 * 311.63348 * 3 2 1 29 29 H 1.08999 * 109.47378 * 71.64347 * 3 2 1 30 30 H 1.09001 * 113.75795 * 336.23863 * 4 2 1 31 31 H 1.09001 * 113.76164 * 107.49231 * 4 2 1 32 32 H 1.09000 * 109.46313 * 190.63663 * 6 5 4 33 33 H 1.08998 * 109.46653 * 310.63572 * 6 5 4 34 34 H 1.08994 * 109.47399 * 299.99490 * 7 6 5 35 35 H 1.09007 * 109.47638 * 60.00288 * 7 6 5 36 36 H 1.09001 * 109.47154 * 300.00023 * 8 7 6 37 37 H 1.08996 * 109.47182 * 59.99960 * 8 7 6 38 38 H 0.97001 * 119.99987 * 179.97438 * 12 11 9 39 39 H 1.08001 * 126.58408 * 359.70263 * 20 19 17 40 40 H 1.08000 * 126.57885 * 180.02562 * 21 20 19 41 41 H 1.08005 * 125.79272 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1280 1.4083 0.0000 4 6 2.1496 -0.9362 -1.0531 5 7 3.1155 -1.3197 0.0000 6 6 3.3459 -2.7706 0.0000 7 6 4.1451 -3.1599 -1.2452 8 6 4.3856 -4.6709 -1.2449 9 6 5.1722 -5.0547 -2.4716 10 1 5.4711 -4.2965 -3.1805 11 6 5.5104 -6.3735 -2.6893 12 7 5.1468 -7.2965 -1.8259 13 14 6.4860 -6.8490 -4.2095 14 1 7.7911 -6.1406 -4.2019 15 1 6.7183 -8.3158 -4.2099 16 1 5.7236 -6.4689 -5.4259 17 6 2.1496 -0.9362 1.0532 18 1 1.4898 -1.7467 1.3626 19 6 2.7759 -0.2113 2.2165 20 6 2.2138 -0.0300 3.4251 21 6 3.1438 0.6956 4.2046 22 6 4.2186 0.9137 3.4260 23 8 3.9901 0.3625 2.2228 24 1 -0.3633 0.3238 0.9754 25 1 -0.3633 0.6828 -0.7680 26 1 -0.3633 -1.0065 -0.2072 27 1 3.1966 1.3492 -0.2073 28 1 1.6417 2.0096 -0.7680 29 1 1.9722 1.8693 0.9753 30 1 1.4905 -1.7479 -1.3611 31 1 2.6008 -0.4120 -1.8956 32 1 3.9055 -3.0495 0.8928 33 1 2.3879 -3.2905 -0.0057 34 1 3.5855 -2.8810 -2.1380 35 1 5.1031 -2.6399 -1.2395 36 1 4.9454 -4.9496 -0.3521 37 1 3.4279 -5.1913 -1.2504 38 1 5.3844 -8.2244 -1.9791 39 1 1.2375 -0.3694 3.7384 40 1 3.0159 1.0129 5.2290 41 1 5.1134 1.4432 3.7184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602924716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:42 Heat of formation + Delta-G solvation = 30.531391 kcal Electronic energy + Delta-G solvation = -19940.142862 eV Core-core repulsion = 17015.219175 eV Total energy + Delta-G solvation = -2924.923688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.54677 -40.28794 -34.66084 -32.93190 -32.76456 -30.97461 -30.16154 -27.53439 -27.03856 -25.66781 -24.15611 -21.83877 -21.35891 -20.63301 -19.91693 -18.63771 -17.10500 -16.31417 -16.07851 -15.37223 -15.31859 -14.78308 -14.41429 -14.03747 -13.60217 -13.33506 -13.03793 -12.74035 -12.64211 -12.44301 -12.33822 -12.10319 -11.99684 -11.64187 -11.30633 -11.10274 -10.83740 -10.69438 -10.53116 -10.44667 -10.34618 -9.83684 -9.65795 -9.30046 -9.04227 -8.63787 -8.32510 -8.31753 -5.97144 -3.99239 1.80426 2.63339 3.09828 3.35491 3.39419 3.42355 3.96916 4.22804 4.48714 4.61316 4.86012 5.02795 5.08528 5.10746 5.20511 5.32534 5.38521 5.47034 5.53278 5.62133 5.74747 5.77221 5.81880 5.84674 5.91800 5.93756 6.03272 6.07397 6.13293 6.28726 6.35495 6.46010 6.56816 6.71489 6.85526 7.16298 7.23245 7.38934 7.70470 7.85443 8.03060 8.46415 9.07591 9.64569 11.14323 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.004016 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.168892 B = 6971.010977 C = 7473.975146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.121 4.121 4 C 0.013 3.987 5 N -0.464 5.464 6 C 0.022 3.978 7 C -0.102 4.102 8 C 0.022 3.978 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.104 3.896 18 H 0.105 0.895 19 C 0.032 3.968 20 C -0.222 4.222 21 C -0.217 4.217 22 C -0.050 4.050 23 O -0.152 6.152 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 17.729 8.847 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 C -0.178 4.178 4 C -0.116 4.116 5 N -0.186 5.186 6 C -0.106 4.106 7 C -0.140 4.140 8 C -0.015 4.015 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.006 4.006 18 H 0.122 0.878 19 C -0.019 4.019 20 C -0.242 4.242 21 C -0.236 4.236 22 C -0.118 4.118 23 O -0.046 6.046 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.114 17.783 8.620 21.363 hybrid contribution -0.253 -0.947 -0.388 1.054 sum -8.367 16.836 8.233 20.524 Atomic orbital electron populations 1.21800 0.93682 1.02172 1.02091 1.22372 0.95142 0.95880 0.94742 1.21516 1.01680 0.93284 1.01338 1.24023 0.94001 0.97717 0.95851 1.68560 1.31012 1.17382 1.01651 1.22823 0.99738 0.86526 1.01513 1.21565 0.98512 0.99953 0.93940 1.19067 0.96703 0.88624 0.97118 1.21211 1.34499 0.92762 1.07232 0.92747 1.25023 0.96151 0.96689 0.96600 1.69959 1.46746 1.01119 1.35818 0.86657 0.80641 0.77243 0.83456 1.20217 1.21305 1.20267 1.22159 0.93050 0.96513 0.88887 0.87786 1.21909 0.84426 0.99461 0.96124 1.21473 1.02151 1.06984 0.93586 1.21735 0.95092 1.05483 1.01289 1.24036 1.01234 1.02879 0.83675 1.84151 1.32248 1.55123 1.33119 0.92273 0.91970 0.92265 0.91167 0.92476 0.92686 0.90756 0.89077 0.91052 0.94504 0.93486 0.92620 0.96629 0.96846 0.92997 0.83917 0.83870 0.78520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.22 37.16 0.34 -0.94 16 2 C -0.08 -0.92 1.35 -153.58 -0.21 -1.13 16 3 C -0.12 -1.35 8.13 37.16 0.30 -1.05 16 4 C 0.01 0.17 6.19 -2.77 -0.02 0.15 16 5 N -0.46 -7.29 5.88 -231.44 -1.36 -8.65 16 6 C 0.02 0.40 4.82 -3.83 -0.02 0.38 16 7 C -0.10 -2.19 5.22 -26.73 -0.14 -2.33 16 8 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 9 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 10 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 13 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.10 1.38 3.28 -67.81 -0.22 1.15 16 18 H 0.10 1.30 7.75 -51.93 -0.40 0.90 16 19 C 0.03 0.44 5.06 -35.63 -0.18 0.26 16 20 C -0.22 -2.70 10.81 -39.70 -0.43 -3.13 16 21 C -0.22 -2.41 10.91 -39.70 -0.43 -2.84 16 22 C -0.05 -0.57 12.09 29.41 0.36 -0.21 16 23 O -0.15 -2.20 10.40 5.70 0.06 -2.15 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.53 7.94 -51.93 -0.41 0.12 16 27 H 0.07 0.90 7.99 -51.92 -0.41 0.49 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.62 7.46 -51.93 -0.39 0.23 16 30 H 0.07 0.98 7.60 -51.93 -0.39 0.59 16 31 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 34 H 0.05 0.98 7.54 -51.93 -0.39 0.59 16 35 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.20 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -31.74 336.32 -8.71 -40.45 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.99 Total: -2.01 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -1.20 Total: -23.03 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.62 Total: -35.32 kcal Atomic # 8 Polarization: -2.20 SS G_CDS: 0.06 Total: -2.15 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.74 -8.71 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602924716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.979 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds