Wall clock time and date at job start Mon Mar 30 2020 00:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 113.00705 * 2 1 4 4 C 1.53928 * 113.73411 * 228.36317 * 2 1 3 5 5 N 1.47957 * 86.18224 * 221.92111 * 4 2 1 6 6 C 1.46905 * 110.99888 * 137.58373 * 5 4 2 7 7 C 1.52991 * 109.47039 * 70.64038 * 6 5 4 8 8 C 1.53002 * 109.47013 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47500 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99845 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00510 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00390 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47469 * 59.99436 * 13 11 9 15 15 H 1.48503 * 109.47279 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46881 * 299.99388 * 13 11 9 17 17 C 1.47960 * 90.76311 * 24.68751 * 5 4 2 18 18 H 1.08995 * 113.85529 * 89.63819 * 17 5 4 19 19 C 1.50696 * 113.75878 * 220.99398 * 17 5 4 20 20 C 1.34515 * 125.78542 * 196.56199 * 19 17 5 21 21 C 1.41388 * 106.83843 * 179.97438 * 20 19 17 22 22 C 1.34506 * 106.83998 * 359.97438 * 21 20 19 23 23 O 1.34304 * 125.79125 * 16.51963 * 19 17 5 24 24 H 1.09005 * 109.46997 * 288.36729 * 1 2 3 25 25 H 1.08997 * 109.47258 * 48.36384 * 1 2 3 26 26 H 1.08996 * 109.47126 * 168.36667 * 1 2 3 27 27 H 1.09007 * 109.46465 * 191.63728 * 3 2 1 28 28 H 1.08992 * 109.47324 * 311.63348 * 3 2 1 29 29 H 1.08999 * 109.47378 * 71.64347 * 3 2 1 30 30 H 1.09001 * 113.75795 * 336.23863 * 4 2 1 31 31 H 1.09001 * 113.76164 * 107.49231 * 4 2 1 32 32 H 1.09000 * 109.46313 * 190.63663 * 6 5 4 33 33 H 1.08998 * 109.46653 * 310.63572 * 6 5 4 34 34 H 1.08994 * 109.47399 * 299.99490 * 7 6 5 35 35 H 1.09007 * 109.47638 * 60.00288 * 7 6 5 36 36 H 1.09001 * 109.47154 * 300.00023 * 8 7 6 37 37 H 1.08996 * 109.47182 * 59.99960 * 8 7 6 38 38 H 0.97001 * 119.99987 * 179.97438 * 12 11 9 39 39 H 1.08001 * 126.58408 * 359.70263 * 20 19 17 40 40 H 1.08000 * 126.57885 * 180.02562 * 21 20 19 41 41 H 1.08005 * 125.79272 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1280 1.4083 0.0000 4 6 2.1496 -0.9362 -1.0531 5 7 3.1155 -1.3197 0.0000 6 6 3.3459 -2.7706 0.0000 7 6 4.1451 -3.1599 -1.2452 8 6 4.3856 -4.6709 -1.2449 9 6 5.1722 -5.0547 -2.4716 10 1 5.4711 -4.2965 -3.1805 11 6 5.5104 -6.3735 -2.6893 12 7 5.1468 -7.2965 -1.8259 13 14 6.4860 -6.8490 -4.2095 14 1 7.7911 -6.1406 -4.2019 15 1 6.7183 -8.3158 -4.2099 16 1 5.7236 -6.4689 -5.4259 17 6 2.1496 -0.9362 1.0532 18 1 1.4898 -1.7467 1.3626 19 6 2.7759 -0.2113 2.2165 20 6 2.2138 -0.0300 3.4251 21 6 3.1438 0.6956 4.2046 22 6 4.2186 0.9137 3.4260 23 8 3.9901 0.3625 2.2228 24 1 -0.3633 0.3238 0.9754 25 1 -0.3633 0.6828 -0.7680 26 1 -0.3633 -1.0065 -0.2072 27 1 3.1966 1.3492 -0.2073 28 1 1.6417 2.0096 -0.7680 29 1 1.9722 1.8693 0.9753 30 1 1.4905 -1.7479 -1.3611 31 1 2.6008 -0.4120 -1.8956 32 1 3.9055 -3.0495 0.8928 33 1 2.3879 -3.2905 -0.0057 34 1 3.5855 -2.8810 -2.1380 35 1 5.1031 -2.6399 -1.2395 36 1 4.9454 -4.9496 -0.3521 37 1 3.4279 -5.1913 -1.2504 38 1 5.3844 -8.2244 -1.9791 39 1 1.2375 -0.3694 3.7384 40 1 3.0159 1.0129 5.2290 41 1 5.1134 1.4432 3.7184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602924716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:42 Heat of formation + Delta-G solvation = 11.093487 kcal Electronic energy + Delta-G solvation = -19940.985753 eV Core-core repulsion = 17015.219175 eV Total energy + Delta-G solvation = -2925.766578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.48793 -41.36501 -36.41048 -34.60115 -33.81560 -32.52122 -31.18723 -28.78965 -28.30921 -26.70845 -25.83351 -23.26456 -22.48044 -21.64251 -21.54731 -19.58470 -18.49276 -18.04715 -17.10429 -16.71882 -16.48707 -16.27124 -15.94262 -15.40635 -14.55579 -14.39730 -14.30254 -14.19233 -13.77753 -13.61854 -13.46350 -13.38994 -13.08382 -12.94746 -12.81675 -12.59617 -12.54175 -12.18467 -12.00537 -11.76903 -11.56310 -11.39102 -11.34882 -11.02973 -10.72854 -10.56739 -9.82736 -9.25638 -8.21565 -6.33110 0.87349 1.38807 1.42324 1.50326 1.75720 2.21697 2.39884 2.86407 3.11328 3.26350 3.66130 3.96757 3.99790 4.07733 4.20710 4.22965 4.27255 4.34186 4.37926 4.63984 4.65698 4.76404 4.80835 4.89126 4.91860 4.98843 5.02476 5.07183 5.08651 5.11534 5.17518 5.23765 5.30046 5.39564 5.48292 5.49788 5.67964 5.71533 5.82396 6.00851 6.23890 6.40008 6.82779 7.36154 8.90260 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.004016 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.168892 B = 6971.010977 C = 7473.975146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 C -0.115 4.115 4 C 0.007 3.993 5 N -0.482 5.482 6 C 0.036 3.964 7 C -0.085 4.085 8 C 0.027 3.973 9 C -0.545 4.545 10 H 0.058 0.942 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.966 3.034 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.265 1.265 17 C 0.102 3.898 18 H 0.110 0.890 19 C 0.005 3.995 20 C -0.222 4.222 21 C -0.222 4.222 22 C -0.056 4.056 23 O -0.180 6.180 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.044 0.956 36 H -0.012 1.012 37 H -0.006 1.006 38 H 0.264 0.736 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.646 19.039 8.619 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 C -0.172 4.172 4 C -0.121 4.121 5 N -0.204 5.204 6 C -0.093 4.093 7 C -0.123 4.123 8 C -0.010 4.010 9 C -0.583 4.583 10 H 0.076 0.924 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.190 1.190 17 C -0.007 4.007 18 H 0.128 0.872 19 C -0.046 4.046 20 C -0.241 4.241 21 C -0.241 4.241 22 C -0.124 4.124 23 O -0.076 6.076 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.006 0.994 37 H 0.012 0.988 38 H 0.073 0.927 39 H 0.177 0.823 40 H 0.186 0.814 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.765 19.113 8.397 22.641 hybrid contribution -0.044 -1.326 -0.236 1.347 sum -8.809 17.787 8.161 21.461 Atomic orbital electron populations 1.21780 0.91498 1.02802 1.03204 1.22297 0.96669 0.95196 0.92516 1.21453 1.00417 0.93403 1.01913 1.24119 0.93711 0.98349 0.95906 1.68528 1.33133 1.14893 1.03809 1.22524 0.99099 0.88775 0.98853 1.21284 0.98689 0.96222 0.96081 1.18957 0.94923 0.91846 0.95314 1.21640 1.35148 0.93402 1.08116 0.92377 1.25990 0.97108 0.96564 1.00079 1.70092 1.47800 1.01590 1.37872 0.85487 0.79140 0.77091 0.79257 1.19314 1.20614 1.18983 1.22280 0.92514 0.97100 0.88847 0.87232 1.22044 0.84827 1.00826 0.96890 1.21799 1.02917 1.06338 0.93087 1.22096 0.94595 1.05066 1.02357 1.24763 1.02494 1.02353 0.82773 1.84125 1.32839 1.55889 1.34712 0.91269 0.90584 0.92065 0.93366 0.90606 0.92689 0.90496 0.89150 0.92614 0.93949 0.92820 0.93695 0.99407 0.98792 0.92705 0.82260 0.81379 0.75567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.22 71.98 0.66 -1.49 16 2 C -0.07 -1.42 1.35 -51.54 -0.07 -1.49 16 3 C -0.11 -2.41 8.13 71.98 0.59 -1.82 16 4 C 0.01 0.19 6.19 86.40 0.53 0.73 16 5 N -0.48 -15.20 5.88 -886.14 -5.21 -20.41 16 6 C 0.04 1.33 4.82 86.30 0.42 1.75 16 7 C -0.08 -3.74 5.22 30.59 0.16 -3.58 16 8 C 0.03 1.50 4.97 29.85 0.15 1.65 16 9 C -0.55 -32.15 9.11 25.60 0.23 -31.92 16 10 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 11 C 0.00 0.02 5.46 84.65 0.46 0.48 16 12 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 13 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 C 0.10 2.65 3.28 44.27 0.15 2.80 16 18 H 0.11 2.67 7.75 -2.39 -0.02 2.65 16 19 C 0.01 0.14 5.06 24.83 0.13 0.26 16 20 C -0.22 -5.05 10.81 22.19 0.24 -4.81 16 21 C -0.22 -4.50 10.91 22.19 0.24 -4.26 16 22 C -0.06 -1.21 12.09 66.97 0.81 -0.40 16 23 O -0.18 -5.17 10.40 -2.51 -0.03 -5.20 16 24 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.97 7.94 -2.39 -0.02 0.95 16 27 H 0.05 1.22 7.99 -2.38 -0.02 1.20 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.16 7.46 -2.39 -0.02 1.14 16 30 H 0.08 1.97 7.60 -2.39 -0.02 1.95 16 31 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.04 1.50 7.69 -2.39 -0.02 1.48 16 34 H 0.05 2.27 7.54 -2.39 -0.02 2.25 16 35 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 36 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.23 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -69.05 336.32 2.75 -66.31 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.97 Total: 11.96 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 4.70 Total: -42.13 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -4.92 Total: -78.11 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.03 Total: -5.20 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.05 2.75 -66.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602924716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.399 kcal (2) G-P(sol) polarization free energy of solvation -69.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds