Wall clock time and date at job start Mon Mar 30 2020 00:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34514 * 125.79240 * 2 1 4 4 C 1.41379 * 106.84018 * 180.29776 * 3 2 1 5 5 C 1.34512 * 106.84353 * 359.57267 * 4 3 2 6 6 C 1.50699 * 125.79184 * 180.11927 * 5 4 3 7 7 N 1.46901 * 109.47294 * 96.39326 * 6 5 4 8 8 C 1.46904 * 110.99922 * 163.54565 * 7 6 5 9 9 C 1.53003 * 109.47122 * 190.00094 * 8 7 6 10 10 C 1.52996 * 109.47005 * 180.02562 * 9 8 7 11 11 C 1.50708 * 109.46870 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99705 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99775 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00172 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99879 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47079 * 89.99514 * 15 13 11 17 17 H 1.48496 * 109.47470 * 209.99734 * 15 13 11 18 18 H 1.48497 * 109.46990 * 330.00202 * 15 13 11 19 19 C 1.46902 * 110.99935 * 287.49962 * 7 6 5 20 20 C 1.52998 * 117.49615 * 142.75841 * 19 7 6 21 21 C 1.52997 * 117.50085 * 74.09660 * 19 7 6 22 22 O 1.34303 * 108.41923 * 0.42978 * 5 4 3 23 23 H 1.09000 * 109.46840 * 89.99899 * 1 2 3 24 24 H 1.08995 * 109.47119 * 210.00722 * 1 2 3 25 25 H 1.09005 * 109.46819 * 330.00661 * 1 2 3 26 26 H 1.07998 * 126.57468 * 0.03188 * 3 2 1 27 27 H 1.08005 * 126.57831 * 179.73496 * 4 3 2 28 28 H 1.09000 * 109.47108 * 216.39214 * 6 5 4 29 29 H 1.08995 * 109.47309 * 336.39187 * 6 5 4 30 30 H 1.08997 * 109.47035 * 309.99862 * 8 7 6 31 31 H 1.08995 * 109.47397 * 70.00109 * 8 7 6 32 32 H 1.09003 * 109.46618 * 299.99941 * 9 8 7 33 33 H 1.09002 * 109.46616 * 59.99728 * 9 8 7 34 34 H 1.08997 * 109.47027 * 299.99691 * 10 9 8 35 35 H 1.08995 * 109.47521 * 60.00010 * 10 9 8 36 36 H 0.96993 * 119.99985 * 179.97438 * 14 13 11 37 37 H 1.08999 * 115.54765 * 288.42707 * 19 7 6 38 38 H 1.08994 * 117.50247 * 359.97438 * 20 19 7 39 39 H 1.08997 * 117.49949 * 145.02387 * 20 19 7 40 40 H 1.08997 * 117.50072 * 214.98341 * 21 19 7 41 41 H 1.09000 * 117.49477 * 359.97438 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6319 -0.0070 5 6 3.5814 -0.7123 -0.0013 6 6 4.7705 -1.6380 -0.0029 7 7 5.0685 -2.0548 1.3738 8 6 5.9445 -3.2340 1.3889 9 6 6.0310 -3.7869 2.8129 10 6 6.9438 -5.0147 2.8287 11 6 7.0285 -5.5596 4.2312 12 1 6.4859 -5.0781 5.0313 13 6 7.7996 -6.6722 4.4931 14 7 8.4607 -7.2582 3.5189 15 14 7.9052 -7.3473 6.2316 16 1 6.8298 -8.3502 6.4393 17 1 9.2281 -7.9910 6.4332 18 1 7.7413 -6.2373 7.2043 19 6 5.6588 -0.9506 2.1421 20 6 5.2604 -0.8219 3.6137 21 6 4.7270 0.1789 2.5855 22 8 2.2924 -1.0895 -0.0008 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.9666 2.1203 0.0005 27 1 4.5213 1.2432 -0.0129 28 1 4.5463 -2.5164 -0.6081 29 1 5.6338 -1.1198 -0.4205 30 1 5.5369 -3.9979 0.7267 31 1 6.9403 -2.9513 1.0478 32 1 6.4386 -3.0230 3.4750 33 1 5.0351 -4.0697 3.1539 34 1 6.5367 -5.7787 2.1664 35 1 7.9396 -4.7315 2.4878 36 1 9.0034 -8.0407 3.7032 37 1 6.6804 -0.6835 1.8720 38 1 4.5601 -1.5561 4.0116 39 1 6.0198 -0.4695 4.3117 40 1 5.1356 1.1891 2.6075 41 1 3.6760 0.1029 2.3068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608832350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:48 Heat of formation + Delta-G solvation = 32.403254 kcal Electronic energy + Delta-G solvation = -19674.344924 eV Core-core repulsion = 16749.502407 eV Total energy + Delta-G solvation = -2924.842518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.57681 -38.46794 -34.65432 -33.62165 -33.14039 -32.29595 -30.97039 -28.23292 -25.93620 -23.95204 -22.84730 -22.29539 -21.54187 -20.65628 -19.93872 -19.80211 -16.71433 -16.27354 -16.10655 -15.49807 -15.32491 -14.67560 -14.33400 -14.18063 -13.69154 -13.38976 -13.11585 -13.09169 -12.79577 -12.69048 -12.26508 -12.00282 -11.70732 -11.49680 -11.29534 -11.26519 -10.83283 -10.60545 -10.50330 -10.26486 -9.91171 -9.72182 -9.48639 -9.27215 -9.03062 -8.31434 -8.30068 -8.08493 -5.96046 -3.97624 1.71979 2.60133 2.92629 3.34769 3.40679 3.44465 4.01864 4.04202 4.49991 4.61619 4.89535 5.03899 5.07581 5.16481 5.19760 5.26701 5.31091 5.39875 5.40647 5.48197 5.55083 5.69820 5.81568 5.85371 5.93231 5.94838 6.00306 6.17169 6.25727 6.34868 6.44747 6.54620 6.76288 6.81631 7.15676 7.23900 7.30442 7.41858 7.73288 7.88678 8.04995 8.48734 9.09608 9.66114 11.15513 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032394 B = 0.003625 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.162374 B = 7721.711688 C = 7807.548021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.022 4.022 3 C -0.214 4.214 4 C -0.202 4.202 5 C 0.012 3.988 6 C 0.132 3.868 7 N -0.511 5.511 8 C 0.061 3.939 9 C -0.103 4.103 10 C 0.022 3.978 11 C -0.516 4.516 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.007 3.993 20 C -0.158 4.158 21 C -0.169 4.169 22 O -0.166 6.166 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.699 17.417 -8.178 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.234 4.234 4 C -0.222 4.222 5 C -0.038 4.038 6 C 0.004 3.996 7 N -0.235 5.235 8 C -0.065 4.065 9 C -0.141 4.141 10 C -0.016 4.016 11 C -0.554 4.554 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.101 4.101 20 C -0.196 4.196 21 C -0.207 4.207 22 O -0.062 6.062 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.114 16.821 -7.996 22.218 hybrid contribution 1.031 -0.022 0.544 1.166 sum -11.083 16.799 -7.452 21.461 Atomic orbital electron populations 1.20262 0.85519 1.03909 1.03175 1.22387 0.93934 0.84409 1.06518 1.21479 0.92794 0.99060 1.10022 1.21455 0.97858 0.93802 1.09054 1.22261 0.82848 0.94134 1.04605 1.20430 0.90568 0.97114 0.91470 1.61803 1.46246 1.04910 1.10546 1.22325 0.93370 0.90002 1.00852 1.21641 1.00785 0.99002 0.92640 1.19077 0.94009 0.91487 0.97007 1.21250 1.28063 1.11663 0.94437 0.92699 1.25023 0.95675 0.96887 0.96954 1.69965 1.30914 1.21286 1.31535 0.86609 0.77271 0.79167 0.85052 1.20684 1.21295 1.19884 1.22297 0.95929 0.94779 0.97118 1.23015 1.03421 1.01908 0.91230 1.23147 1.00053 0.93668 1.03806 1.83995 1.16431 1.34813 1.71001 0.90424 0.90598 0.89623 0.83948 0.83957 0.89156 0.91551 0.91020 0.94996 0.92880 0.92839 0.96716 0.96866 0.93089 0.89891 0.88082 0.88954 0.89400 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.01 0.38 -0.18 16 2 C -0.02 -0.25 7.32 -35.62 -0.26 -0.52 16 3 C -0.21 -2.37 10.81 -39.70 -0.43 -2.80 16 4 C -0.20 -2.39 8.00 -39.70 -0.32 -2.71 16 5 C 0.01 0.17 5.35 -35.63 -0.19 -0.02 16 6 C 0.13 1.74 5.52 -4.98 -0.03 1.72 16 7 N -0.51 -7.93 4.58 -228.09 -1.05 -8.98 16 8 C 0.06 1.07 4.95 -3.82 -0.02 1.05 16 9 C -0.10 -2.18 4.89 -26.73 -0.13 -2.31 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 12 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 15 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.01 0.11 4.29 -67.71 -0.29 -0.18 16 20 C -0.16 -2.27 8.86 -26.69 -0.24 -2.51 16 21 C -0.17 -2.17 8.11 -26.69 -0.22 -2.39 16 22 O -0.17 -2.38 10.65 5.70 0.06 -2.32 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.14 1.49 8.05 -52.48 -0.42 1.07 16 28 H 0.09 1.15 7.80 -51.93 -0.40 0.75 16 29 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 30 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16 31 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.05 1.11 6.34 -51.93 -0.33 0.78 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.39 6.09 -51.93 -0.32 1.08 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -31.46 335.27 -9.42 -40.88 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.91 Total: -0.94 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -2.29 Total: -24.08 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.31 Total: -35.57 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: 0.06 Total: -2.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.46 -9.42 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.281 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds