Wall clock time and date at job start Sun Mar 29 2020 23:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00059 * 2 1 4 4 H 1.48498 * 109.46878 * 239.99830 * 3 2 1 5 5 H 1.48497 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47201 * 119.99746 * 3 2 1 7 7 C 1.37883 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99255 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.53039 * 109.45718 * 179.97438 * 9 7 2 11 11 C 1.53189 * 109.31506 * 181.38649 * 10 9 7 12 12 N 1.46928 * 108.77454 * 305.36379 * 11 10 9 13 13 C 1.34780 * 120.62794 * 233.58797 * 12 11 10 14 14 O 1.21277 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99673 * 179.97438 * 13 12 11 16 16 H 1.09008 * 115.58090 * 325.76619 * 15 13 12 17 17 C 1.53124 * 117.51493 * 111.53434 * 15 13 12 18 18 C 1.52458 * 59.85604 * 107.45084 * 17 15 13 19 19 C 1.53255 * 128.58587 * 117.60355 * 18 17 15 20 20 C 1.53896 * 86.88157 * 114.94322 * 19 18 17 21 21 C 1.53258 * 128.58381 * 242.40611 * 18 17 15 22 22 C 1.46921 * 118.73869 * 53.85549 * 12 11 10 23 23 C 1.53036 * 109.45987 * 300.06168 * 9 7 2 24 24 H 0.96996 * 120.00020 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46123 * 60.02863 * 9 7 2 26 26 H 1.08998 * 109.50250 * 61.42646 * 10 9 7 27 27 H 1.09007 * 109.52246 * 301.34813 * 10 9 7 28 28 H 1.09001 * 109.59046 * 185.57561 * 11 10 9 29 29 H 1.09004 * 109.70604 * 65.22057 * 11 10 9 30 30 H 1.09002 * 117.51046 * 0.02562 * 17 15 13 31 31 H 1.08994 * 117.55265 * 214.88167 * 17 15 13 32 32 H 1.08996 * 113.64703 * 0.45123 * 19 18 17 33 33 H 1.08992 * 113.64819 * 229.44274 * 19 18 17 34 34 H 1.09000 * 113.58312 * 139.57180 * 20 19 18 35 35 H 1.08997 * 113.58625 * 270.39250 * 20 19 18 36 36 H 1.08997 * 113.65201 * 130.56094 * 21 18 17 37 37 H 1.08996 * 113.72829 * 359.55745 * 21 18 17 38 38 H 1.08997 * 109.58767 * 65.93159 * 22 12 11 39 39 H 1.09000 * 109.59061 * 186.35479 * 22 12 11 40 40 H 1.08995 * 109.50109 * 298.56968 * 23 9 7 41 41 H 1.08999 * 109.49845 * 58.63608 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2456 -3.6622 0.0005 11 6 1.4766 -4.9866 -0.0344 12 7 0.5222 -5.0089 1.0824 13 6 0.5114 -6.0352 1.9560 14 8 1.2940 -6.9522 1.8241 15 6 -0.4733 -6.0433 3.0968 16 1 -0.7140 -5.0669 3.5177 17 6 -1.5879 -7.0927 3.0618 18 6 -0.4361 -7.2317 4.0510 19 6 -0.4861 -7.2296 5.5827 20 6 -0.0043 -8.6897 5.5167 21 6 0.6108 -8.3467 4.1484 22 6 -0.4240 -3.8941 1.2254 23 6 0.3696 -2.5789 1.2491 24 1 -0.4850 0.8400 -0.0004 25 1 0.6251 -2.5571 -0.8900 26 1 2.8556 -3.6193 0.9028 27 1 2.8886 -3.5916 -0.8769 28 1 2.1751 -5.8175 0.0651 29 1 0.9373 -5.0737 -0.9777 30 1 -1.6084 -7.7773 2.2139 31 1 -2.5616 -6.8073 3.4597 32 1 -1.4923 -7.1192 5.9871 33 1 0.2332 -6.5522 6.0427 34 1 0.7355 -8.9396 6.2772 35 1 -0.8162 -9.4148 5.4606 36 1 1.6355 -7.9803 4.2093 37 1 0.4854 -9.1325 3.4035 38 1 -1.1154 -3.8913 0.3827 39 1 -0.9801 -4.0039 2.1564 40 1 0.9967 -2.5461 2.1399 41 1 -0.3226 -1.7370 1.2602 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611677947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:19 Heat of formation + Delta-G solvation = 2.576921 kcal Electronic energy + Delta-G solvation = -20278.130909 eV Core-core repulsion = 17351.995024 eV Total energy + Delta-G solvation = -2926.135884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27630 -38.60080 -36.60289 -33.72998 -33.37892 -31.16749 -30.03868 -26.40414 -25.66531 -24.28443 -23.08121 -22.61604 -21.93560 -19.70784 -18.57595 -17.89464 -17.05169 -16.17251 -15.61367 -15.22808 -15.09099 -14.58315 -14.28047 -13.86015 -13.11053 -12.96673 -12.79571 -12.44533 -12.41603 -12.12675 -11.91553 -11.68649 -11.55828 -11.40609 -11.22249 -10.93150 -10.66940 -10.39858 -10.33021 -10.11550 -10.04163 -9.71295 -9.59701 -9.26157 -9.17153 -8.90790 -8.38399 -7.95775 -6.03904 -4.10125 2.85006 3.29163 3.33834 3.36959 3.44505 3.83835 4.39979 4.40415 4.62797 4.78344 4.80311 4.88787 5.15042 5.25699 5.34253 5.55824 5.62046 5.66637 5.73599 5.79787 5.81450 5.84906 5.92644 6.06015 6.11899 6.14726 6.16459 6.29194 6.32407 6.40625 6.46849 6.66803 6.90850 7.04609 7.16246 7.28443 7.65738 7.91435 7.97689 8.03737 8.39538 8.64063 8.93057 9.54929 11.01529 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034187 B = 0.004364 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.824764 B = 6414.724281 C = 6661.591254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.597 5.597 13 C 0.541 3.459 14 O -0.556 6.556 15 C -0.175 4.175 16 H 0.124 0.876 17 C -0.122 4.122 18 C -0.129 4.129 19 C -0.099 4.099 20 C -0.142 4.142 21 C -0.080 4.080 22 C 0.103 3.897 23 C -0.124 4.124 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 -12.447 7.809 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.328 5.328 13 C 0.329 3.671 14 O -0.435 6.435 15 C -0.196 4.196 16 H 0.142 0.858 17 C -0.160 4.160 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.180 4.180 21 C -0.117 4.117 22 C -0.019 4.019 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.928 -12.778 7.715 15.434 hybrid contribution 0.363 1.293 -0.098 1.346 sum -3.564 -11.485 7.617 14.234 Atomic orbital electron populations 1.69825 1.05845 1.26567 1.50880 1.24955 0.94870 0.99028 0.95054 0.86675 0.79637 0.83166 0.78627 1.20305 1.21296 1.20338 1.21179 0.92922 0.90613 1.50394 0.92770 1.18626 0.92644 0.91698 0.94005 1.22003 0.98901 0.94274 1.00923 1.21681 0.91770 0.99658 0.87882 1.48173 1.35731 1.21197 1.27747 1.19544 0.83691 0.81733 0.82157 1.90613 1.41553 1.36447 1.74921 1.22205 1.01352 0.96474 0.99528 0.85779 1.22746 0.92750 0.99929 1.00551 1.22249 1.00357 0.97668 0.92693 1.22496 1.01477 0.97191 0.92446 1.22820 1.00598 0.96344 0.98224 1.22287 0.97682 0.95914 0.95865 1.22148 0.91524 0.87449 1.00777 1.22100 0.99990 0.94633 0.99518 0.92928 0.95481 0.93010 0.92196 0.90436 0.92321 0.88303 0.87839 0.91389 0.89645 0.91444 0.90333 0.89505 0.91479 0.92013 0.91282 0.94295 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 11.30 55.43 0.63 -23.77 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.71 8.56 -34.44 -0.29 -14.01 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.16 2.06 -91.73 -0.19 0.98 16 10 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 11 C 0.11 2.10 6.43 -3.71 -0.02 2.08 16 12 N -0.60 -10.99 2.97 -172.50 -0.51 -11.50 16 13 C 0.54 9.68 7.48 -10.98 -0.08 9.60 16 14 O -0.56 -11.18 14.55 5.56 0.08 -11.10 16 15 C -0.17 -2.50 5.12 -91.99 -0.47 -2.98 16 16 H 0.12 1.68 6.57 -51.92 -0.34 1.34 16 17 C -0.12 -1.45 10.24 -26.94 -0.28 -1.73 16 18 C -0.13 -1.63 2.87 -154.80 -0.45 -2.07 16 19 C -0.10 -1.02 8.10 -26.13 -0.21 -1.23 16 20 C -0.14 -1.40 8.08 -25.80 -0.21 -1.61 16 21 C -0.08 -1.02 6.47 -26.13 -0.17 -1.19 16 22 C 0.10 1.86 6.37 -3.49 -0.02 1.84 16 23 C -0.12 -2.74 5.17 -26.39 -0.14 -2.87 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 28 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.08 5.51 -51.93 -0.29 0.79 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 2.54 6.03 -51.93 -0.31 2.22 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -28.68 322.31 -9.49 -38.17 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.76 Total: 1.84 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.77 Total: -14.33 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.11 Total: -35.27 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.68 -9.49 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611677947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.749 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds