Wall clock time and date at job start Sun Mar 29 2020 23:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48503 * 109.46962 * 269.99402 * 3 2 1 5 5 H 1.48495 * 109.47215 * 29.99647 * 3 2 1 6 6 H 1.48500 * 109.47148 * 149.99760 * 3 2 1 7 7 C 1.37879 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.45965 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31315 * 178.61587 * 10 9 7 12 12 N 1.46929 * 108.77486 * 54.63188 * 11 10 9 13 13 C 1.34779 * 120.62811 * 126.39016 * 12 11 10 14 14 O 1.21284 * 119.99950 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00005 * 180.02562 * 13 12 11 16 16 H 1.08999 * 115.55864 * 34.41444 * 15 13 12 17 17 C 1.53130 * 117.51375 * 248.68345 * 15 13 12 18 18 C 1.52459 * 117.51630 * 180.15439 * 15 13 12 19 19 C 1.53254 * 128.58200 * 349.84878 * 18 15 13 20 20 C 1.53890 * 86.88446 * 194.88796 * 19 18 15 21 21 C 1.53255 * 128.59011 * 225.04770 * 18 15 13 22 22 C 1.46918 * 118.73922 * 306.39780 * 12 11 10 23 23 C 1.53043 * 109.45658 * 59.93466 * 9 7 2 24 24 H 0.97004 * 119.99688 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.44738 * 299.96733 * 9 7 2 26 26 H 1.08998 * 109.49886 * 58.66484 * 10 9 7 27 27 H 1.08994 * 109.52444 * 298.58349 * 10 9 7 28 28 H 1.08998 * 109.58804 * 174.42625 * 11 10 9 29 29 H 1.09003 * 109.58394 * 294.85202 * 11 10 9 30 30 H 1.09001 * 117.50735 * 0.02562 * 17 15 13 31 31 H 1.09000 * 117.51469 * 145.09912 * 17 15 13 32 32 H 1.08998 * 113.64902 * 309.38428 * 19 18 15 33 33 H 1.09009 * 113.64795 * 80.38978 * 19 18 15 34 34 H 1.09002 * 113.58757 * 270.39139 * 20 19 18 35 35 H 1.08996 * 113.66222 * 139.58359 * 20 19 18 36 36 H 1.08999 * 113.64665 * 279.60938 * 21 18 15 37 37 H 1.09001 * 113.64153 * 50.61332 * 21 18 15 38 38 H 1.09008 * 109.58859 * 293.81127 * 22 12 11 39 39 H 1.09000 * 109.70348 * 173.46523 * 22 12 11 40 40 H 1.09003 * 109.49674 * 301.33433 * 23 9 7 41 41 H 1.08990 * 109.49664 * 61.43549 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2457 -3.6622 0.0027 11 6 1.4766 -4.9866 0.0388 12 7 0.5221 -5.0098 -1.0780 13 6 0.5115 -6.0366 -1.9510 14 8 1.2945 -6.9533 -1.8184 15 6 -0.4731 -6.0457 -3.0916 16 1 -0.7115 -5.0699 -3.5148 17 6 -1.5904 -7.0921 -3.0534 18 6 -0.4380 -7.2364 -4.0431 19 6 0.6070 -8.3535 -4.1379 20 6 -0.0087 -8.6986 -5.5054 21 6 -0.4881 -7.2380 -5.5748 22 6 -0.4203 -3.8924 -1.2251 23 6 0.3695 -2.5800 -1.2468 24 1 -0.4850 0.8401 -0.0004 25 1 0.6252 -2.5561 0.8924 26 1 2.8882 -3.5906 0.8803 27 1 2.8559 -3.6204 -0.8994 28 1 2.1750 -5.8176 -0.0600 29 1 0.9371 -5.0702 0.9823 30 1 -1.6131 -7.7735 -2.2029 31 1 -2.5633 -6.8048 -3.4521 32 1 1.6323 -7.9890 -4.1996 33 1 0.4788 -9.1367 -3.3906 34 1 -0.8218 -9.4222 -5.4476 35 1 0.7296 -8.9520 -6.2661 36 1 -1.4941 -7.1267 -5.9794 37 1 0.2325 -6.5628 -6.0364 38 1 -1.1146 -3.8869 -0.3847 39 1 -0.9756 -4.0002 -2.1569 40 1 -0.3230 -1.7383 -1.2583 41 1 0.9967 -2.5480 -2.1376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611677948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:22 Heat of formation + Delta-G solvation = 2.493103 kcal Electronic energy + Delta-G solvation = -20278.667627 eV Core-core repulsion = 17352.528108 eV Total energy + Delta-G solvation = -2926.139519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.27385 -38.60319 -36.61194 -33.72862 -33.37843 -31.16761 -30.06544 -26.41214 -25.66429 -24.28343 -23.08431 -22.61020 -21.93637 -19.71374 -18.57472 -17.89226 -17.05297 -16.17516 -15.61331 -15.22853 -15.09284 -14.58092 -14.28012 -13.85911 -13.11866 -12.97118 -12.80305 -12.44572 -12.41579 -12.12756 -11.91583 -11.68906 -11.56109 -11.40666 -11.23228 -10.94813 -10.64564 -10.39296 -10.32958 -10.11835 -10.04098 -9.71416 -9.59595 -9.25963 -9.17213 -8.90231 -8.38944 -7.96070 -6.04219 -4.10319 2.84939 3.27425 3.34534 3.38012 3.44437 3.83405 4.39901 4.40396 4.62724 4.78457 4.80247 4.88747 5.14924 5.25549 5.34107 5.55751 5.62042 5.66531 5.73543 5.79872 5.81538 5.84873 5.92354 6.05982 6.11609 6.14748 6.16423 6.29949 6.33242 6.40590 6.46796 6.66740 6.90756 7.04557 7.16065 7.28078 7.65739 7.91181 7.97625 8.03624 8.39377 8.63960 8.93097 9.54838 11.01259 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034230 B = 0.004363 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.807524 B = 6415.669068 C = 6662.967631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.597 5.597 13 C 0.541 3.459 14 O -0.556 6.556 15 C -0.175 4.175 16 H 0.124 0.876 17 C -0.122 4.122 18 C -0.129 4.129 19 C -0.080 4.080 20 C -0.142 4.142 21 C -0.099 4.099 22 C 0.104 3.896 23 C -0.125 4.125 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 -12.469 -7.792 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.328 5.328 13 C 0.329 3.671 14 O -0.435 6.435 15 C -0.195 4.195 16 H 0.142 0.858 17 C -0.160 4.160 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.180 4.180 21 C -0.136 4.136 22 C -0.018 4.018 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.909 -12.803 -7.691 15.439 hybrid contribution 0.350 1.303 0.084 1.352 sum -3.559 -11.500 -7.607 14.240 Atomic orbital electron populations 1.69838 1.05849 1.26445 1.50985 1.24956 0.94869 0.99042 0.95071 0.86616 0.79927 0.83511 0.78085 1.20739 1.21239 1.19955 1.21216 0.92958 0.90598 1.50240 0.92718 1.18634 0.92652 0.91721 0.94002 1.22005 0.98906 0.94282 1.00930 1.21685 0.91763 0.99661 0.87889 1.48169 1.35875 1.21045 1.27742 1.19545 0.83691 0.81752 0.82136 1.90614 1.41527 1.36508 1.74880 1.22203 1.01325 0.96486 0.99531 0.85790 1.22769 0.92711 0.99965 1.00538 1.22271 1.00359 0.97638 0.92709 1.22289 0.97696 0.95882 0.95870 1.22815 1.00611 0.96334 0.98223 1.22496 1.01481 0.97182 0.92452 1.22049 0.91604 0.87406 1.00789 1.22027 1.00057 0.94686 0.99535 0.92990 0.95468 0.92189 0.93014 0.90410 0.92305 0.88296 0.87842 0.89493 0.91477 0.90343 0.91444 0.91389 0.89646 0.92051 0.91294 0.87779 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 11.30 55.43 0.63 -23.77 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.68 8.56 -34.44 -0.29 -13.98 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 10 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 11 C 0.11 2.10 6.43 -3.71 -0.02 2.08 16 12 N -0.60 -10.98 2.97 -172.77 -0.51 -11.49 16 13 C 0.54 9.67 7.48 -10.99 -0.08 9.59 16 14 O -0.56 -11.17 14.55 5.55 0.08 -11.09 16 15 C -0.17 -2.50 5.12 -91.99 -0.47 -2.97 16 16 H 0.12 1.68 6.57 -51.93 -0.34 1.34 16 17 C -0.12 -1.45 10.24 -26.87 -0.28 -1.73 16 18 C -0.13 -1.63 2.88 -154.73 -0.45 -2.07 16 19 C -0.08 -1.02 6.47 -26.14 -0.17 -1.19 16 20 C -0.14 -1.40 8.08 -25.81 -0.21 -1.61 16 21 C -0.10 -1.02 8.10 -26.14 -0.21 -1.23 16 22 C 0.10 1.87 6.34 -3.72 -0.02 1.85 16 23 C -0.12 -2.75 5.15 -26.61 -0.14 -2.89 16 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 33 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.07 1.08 5.52 -51.93 -0.29 0.79 16 40 H 0.10 2.55 6.03 -51.93 -0.31 2.23 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -28.70 322.29 -9.50 -38.20 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.76 Total: 1.81 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.77 Total: -14.33 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.11 Total: -35.26 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.70 -9.50 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611677948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.690 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds