Wall clock time and date at job start Mon Mar 30 2020 00:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.47103 * 120.00100 * 2 1 4 4 O 1.21614 * 119.99967 * 174.17115 * 3 2 1 5 5 N 1.34779 * 119.99564 * 354.17687 * 3 2 1 6 6 C 1.46506 * 119.99507 * 185.00689 * 5 3 2 7 7 C 1.52994 * 109.46756 * 175.01288 * 6 5 3 8 8 C 1.50707 * 115.55350 * 306.76735 * 7 6 5 9 9 H 1.08001 * 119.99950 * 144.23185 * 8 7 6 10 10 C 1.37881 * 119.99643 * 324.23094 * 8 7 6 11 11 N 1.31514 * 120.00185 * 2.77681 * 10 8 7 12 12 Si 1.86797 * 119.99716 * 182.77522 * 10 8 7 13 13 H 1.48502 * 109.46878 * 60.00237 * 12 10 8 14 14 H 1.48502 * 109.47076 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47372 * 299.99977 * 12 10 8 16 16 C 1.53004 * 117.49823 * 161.10016 * 7 6 5 17 17 C 1.53004 * 117.50028 * 92.43902 * 7 6 5 18 18 C 1.32992 * 120.00187 * 179.73205 * 2 1 3 19 19 C 1.51447 * 126.34376 * 179.97438 * 18 2 1 20 20 C 1.54280 * 106.85413 * 180.23800 * 19 18 2 21 21 C 1.54984 * 103.65917 * 23.48391 * 20 19 18 22 22 C 1.51848 * 126.34157 * 0.27101 * 18 2 1 23 23 H 1.08996 * 109.47346 * 94.40317 * 1 2 3 24 24 H 1.09003 * 109.46915 * 214.40349 * 1 2 3 25 25 H 1.09001 * 109.47159 * 334.40139 * 1 2 3 26 26 H 0.96988 * 120.00375 * 5.00927 * 5 3 2 27 27 H 1.08993 * 109.47246 * 295.01575 * 6 5 3 28 28 H 1.08999 * 109.46893 * 55.01881 * 6 5 3 29 29 H 0.96994 * 120.00206 * 185.00959 * 11 10 8 30 30 H 1.08997 * 117.49683 * 359.97438 * 16 7 6 31 31 H 1.08998 * 117.50494 * 145.02376 * 16 7 6 32 32 H 1.08997 * 117.50077 * 214.97948 * 17 7 6 33 33 H 1.09001 * 117.49530 * 359.97438 * 17 7 6 34 34 H 1.09005 * 109.98408 * 299.72600 * 19 18 2 35 35 H 1.09001 * 109.98653 * 61.02720 * 19 18 2 36 36 H 1.08994 * 110.79473 * 264.86303 * 20 19 18 37 37 H 1.09000 * 110.43022 * 141.93113 * 20 19 18 38 38 H 1.09000 * 110.83673 * 204.49246 * 21 20 19 39 39 H 1.09006 * 110.83508 * 80.90643 * 21 20 19 40 40 H 1.09002 * 110.43950 * 274.92847 * 22 18 2 41 41 H 1.08997 * 110.43895 * 37.32672 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4539 1.2766 0.1070 5 7 1.5737 2.4381 -0.1184 6 6 2.3119 3.6988 -0.2288 7 6 1.3291 4.8451 -0.4754 8 6 0.3868 4.6553 -1.6361 9 1 -0.6264 5.0245 -1.5751 10 6 0.8181 4.0102 -2.7758 11 7 2.0343 3.5125 -2.8294 12 14 -0.3249 3.8432 -4.2437 13 1 -0.7167 5.1933 -4.7221 14 1 0.3723 3.1143 -5.3336 15 1 -1.5393 3.0886 -3.8422 16 6 1.8146 6.2667 -0.1850 17 6 0.8010 5.5983 0.7473 18 6 2.1719 -1.1517 0.0054 19 6 3.6772 -1.3190 0.0056 20 6 3.9586 -2.8359 0.0068 21 6 2.6674 -3.4482 -0.5929 22 6 1.5627 -2.5426 0.0061 23 1 -0.3634 -0.0789 -1.0246 24 1 -0.3633 -0.8479 0.5807 25 1 -0.3633 0.9268 0.4440 26 1 0.6039 2.4413 -0.1305 27 1 2.8589 3.8817 0.6959 28 1 3.0140 3.6371 -1.0603 29 1 2.3632 3.1234 -3.6547 30 1 2.8341 6.3852 0.1821 31 1 1.4522 7.0647 -0.8330 32 1 -0.2278 5.9567 0.7120 33 1 1.1535 5.2768 1.7273 34 1 4.1032 -0.8597 -0.8864 35 1 4.1026 -0.8626 0.8994 36 1 4.1189 -3.1989 1.0220 37 1 4.8187 -3.0638 -0.6228 38 1 2.5406 -4.4808 -0.2677 39 1 2.6757 -3.3815 -1.6809 40 1 1.3254 -2.8537 1.0235 41 1 0.6686 -2.5668 -0.6168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797767772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:56 Heat of formation + Delta-G solvation = -17.680297 kcal Electronic energy + Delta-G solvation = -20385.719479 eV Core-core repulsion = 17458.705176 eV Total energy + Delta-G solvation = -2927.014303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.20359 -37.58389 -36.47762 -33.37574 -32.58734 -32.09283 -28.71156 -27.45165 -26.06000 -25.34145 -23.53739 -21.24680 -20.55637 -19.97609 -19.22936 -17.74066 -16.40576 -15.78966 -15.34723 -15.14587 -14.81044 -14.16548 -13.97121 -13.45685 -13.20284 -13.14126 -12.60298 -12.35219 -12.22876 -12.07595 -11.73224 -11.54110 -11.37678 -11.07300 -11.00941 -10.93466 -10.74519 -10.71308 -10.52257 -10.50256 -10.22742 -9.66781 -9.03099 -8.81620 -8.73507 -8.41167 -8.24665 -7.67042 -5.99035 -4.17693 1.93593 3.22821 3.30697 3.31460 4.07006 4.28521 4.34889 4.72452 4.81191 5.01061 5.08077 5.32068 5.47317 5.48940 5.54600 5.60214 5.68235 5.85035 5.88889 5.92940 5.97802 6.04342 6.14039 6.19574 6.21290 6.33261 6.44683 6.52405 6.57017 6.63261 6.75326 6.82371 6.91940 7.02035 7.18061 7.27834 7.60706 7.76600 7.98588 8.32867 8.70691 8.87064 9.34243 9.45509 10.91725 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.006054 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.032858 B = 4623.593611 C = 5263.450427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.168 4.168 3 C 0.546 3.454 4 O -0.565 6.565 5 N -0.678 5.678 6 C 0.167 3.833 7 C 0.036 3.964 8 C -0.497 4.497 9 H 0.060 0.940 10 C 0.076 3.924 11 N -0.865 5.865 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.199 4.199 17 C -0.213 4.213 18 C -0.063 4.063 19 C -0.084 4.084 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.095 4.095 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.397 0.603 27 H 0.017 0.983 28 H 0.113 0.887 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -10.784 4.795 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.171 4.171 3 C 0.333 3.667 4 O -0.447 6.447 5 N -0.324 5.324 6 C 0.044 3.956 7 C 0.035 3.965 8 C -0.534 4.534 9 H 0.078 0.922 10 C -0.129 4.129 11 N -0.501 5.501 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.237 4.237 17 C -0.250 4.250 18 C -0.065 4.065 19 C -0.121 4.121 20 C -0.166 4.166 21 C -0.161 4.161 22 C -0.132 4.132 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.231 0.769 27 H 0.035 0.965 28 H 0.131 0.869 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.651 -10.901 4.732 11.901 hybrid contribution -1.115 0.191 -0.908 1.451 sum -1.766 -10.710 3.824 11.509 Atomic orbital electron populations 1.20696 0.91368 1.02322 1.02268 1.21005 0.95825 0.92819 1.07442 1.18037 0.87060 0.83918 0.77667 1.90672 1.14029 1.87737 1.52245 1.45549 1.10254 1.06068 1.70539 1.21029 0.94449 0.80976 0.99178 1.19253 0.96116 0.88366 0.92714 1.20448 0.97207 1.37336 0.98444 0.92225 1.24983 0.95352 0.94035 0.98516 1.69878 1.16101 1.37685 1.26443 0.86665 0.80814 0.78290 0.82300 1.20248 1.21255 1.20139 1.22933 0.96584 1.00301 1.03917 1.22957 0.97889 1.09329 0.94839 1.22487 0.96178 0.93169 0.94713 1.21160 0.92595 0.94530 1.03824 1.22469 0.97506 0.96042 1.00597 1.22504 0.94905 0.98225 1.00427 1.21482 0.98303 0.92122 1.01249 0.91218 0.91937 0.91489 0.76872 0.96478 0.86933 0.92690 0.91501 0.90253 0.90668 0.91381 0.90005 0.89980 0.91763 0.91653 0.91531 0.91310 0.90229 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.10 36.00 0.33 -1.27 16 2 C -0.17 -2.98 6.00 -102.85 -0.62 -3.60 16 3 C 0.55 11.95 7.72 -12.66 -0.10 11.86 16 4 O -0.56 -13.81 14.15 5.27 0.07 -13.74 16 5 N -0.68 -15.08 4.97 -61.49 -0.31 -15.38 16 6 C 0.17 4.04 4.61 -4.04 -0.02 4.02 16 7 C 0.04 0.86 2.04 -155.66 -0.32 0.55 16 8 C -0.50 -12.67 8.39 -34.44 -0.29 -12.96 16 9 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 10 C 0.08 1.95 5.28 -17.82 -0.09 1.85 16 11 N -0.87 -23.26 10.20 55.43 0.57 -22.70 16 12 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 C -0.20 -4.39 9.96 -26.69 -0.27 -4.66 16 17 C -0.21 -4.47 9.92 -26.69 -0.26 -4.74 16 18 C -0.06 -1.01 6.12 -100.23 -0.61 -1.62 16 19 C -0.08 -1.34 4.82 -26.85 -0.13 -1.47 16 20 C -0.13 -1.53 6.88 -25.01 -0.17 -1.70 16 21 C -0.12 -1.33 6.94 -24.68 -0.17 -1.51 16 22 C -0.09 -1.13 5.71 -26.31 -0.15 -1.28 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.75 7.44 -51.93 -0.39 0.36 16 25 H 0.07 0.97 6.65 -51.93 -0.35 0.63 16 26 H 0.40 8.38 6.17 -40.82 -0.25 8.13 16 27 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.11 3.10 5.99 -51.93 -0.31 2.79 16 29 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.08 1.48 7.79 -51.93 -0.40 1.08 16 35 H 0.08 1.41 7.57 -51.93 -0.39 1.02 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.82 7.76 -51.93 -0.40 0.41 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -28.17 328.66 -9.30 -37.46 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.69 Total: 10.74 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.87 Total: -16.52 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.26 Total: -38.08 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.07 Total: -13.74 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.17 -9.30 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797767772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.785 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds