Wall clock time and date at job start Mon Mar 30 2020 00:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.47103 * 120.00100 * 2 1 4 4 O 1.21614 * 119.99967 * 174.17115 * 3 2 1 5 5 N 1.34779 * 119.99564 * 354.17687 * 3 2 1 6 6 C 1.46506 * 119.99507 * 185.00689 * 5 3 2 7 7 C 1.52994 * 109.46756 * 175.01288 * 6 5 3 8 8 C 1.50707 * 115.55350 * 306.76735 * 7 6 5 9 9 H 1.08001 * 119.99950 * 144.23185 * 8 7 6 10 10 C 1.37881 * 119.99643 * 324.23094 * 8 7 6 11 11 N 1.31514 * 120.00185 * 2.77681 * 10 8 7 12 12 Si 1.86797 * 119.99716 * 182.77522 * 10 8 7 13 13 H 1.48502 * 109.46878 * 60.00237 * 12 10 8 14 14 H 1.48502 * 109.47076 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47372 * 299.99977 * 12 10 8 16 16 C 1.53004 * 117.49823 * 161.10016 * 7 6 5 17 17 C 1.53004 * 117.50028 * 92.43902 * 7 6 5 18 18 C 1.32992 * 120.00187 * 179.73205 * 2 1 3 19 19 C 1.51447 * 126.34376 * 179.97438 * 18 2 1 20 20 C 1.54280 * 106.85413 * 180.23800 * 19 18 2 21 21 C 1.54984 * 103.65917 * 23.48391 * 20 19 18 22 22 C 1.51848 * 126.34157 * 0.27101 * 18 2 1 23 23 H 1.08996 * 109.47346 * 94.40317 * 1 2 3 24 24 H 1.09003 * 109.46915 * 214.40349 * 1 2 3 25 25 H 1.09001 * 109.47159 * 334.40139 * 1 2 3 26 26 H 0.96988 * 120.00375 * 5.00927 * 5 3 2 27 27 H 1.08993 * 109.47246 * 295.01575 * 6 5 3 28 28 H 1.08999 * 109.46893 * 55.01881 * 6 5 3 29 29 H 0.96994 * 120.00206 * 185.00959 * 11 10 8 30 30 H 1.08997 * 117.49683 * 359.97438 * 16 7 6 31 31 H 1.08998 * 117.50494 * 145.02376 * 16 7 6 32 32 H 1.08997 * 117.50077 * 214.97948 * 17 7 6 33 33 H 1.09001 * 117.49530 * 359.97438 * 17 7 6 34 34 H 1.09005 * 109.98408 * 299.72600 * 19 18 2 35 35 H 1.09001 * 109.98653 * 61.02720 * 19 18 2 36 36 H 1.08994 * 110.79473 * 264.86303 * 20 19 18 37 37 H 1.09000 * 110.43022 * 141.93113 * 20 19 18 38 38 H 1.09000 * 110.83673 * 204.49246 * 21 20 19 39 39 H 1.09006 * 110.83508 * 80.90643 * 21 20 19 40 40 H 1.09002 * 110.43950 * 274.92847 * 22 18 2 41 41 H 1.08997 * 110.43895 * 37.32672 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4539 1.2766 0.1070 5 7 1.5737 2.4381 -0.1184 6 6 2.3119 3.6988 -0.2288 7 6 1.3291 4.8451 -0.4754 8 6 0.3868 4.6553 -1.6361 9 1 -0.6264 5.0245 -1.5751 10 6 0.8181 4.0102 -2.7758 11 7 2.0343 3.5125 -2.8294 12 14 -0.3249 3.8432 -4.2437 13 1 -0.7167 5.1933 -4.7221 14 1 0.3723 3.1143 -5.3336 15 1 -1.5393 3.0886 -3.8422 16 6 1.8146 6.2667 -0.1850 17 6 0.8010 5.5983 0.7473 18 6 2.1719 -1.1517 0.0054 19 6 3.6772 -1.3190 0.0056 20 6 3.9586 -2.8359 0.0068 21 6 2.6674 -3.4482 -0.5929 22 6 1.5627 -2.5426 0.0061 23 1 -0.3634 -0.0789 -1.0246 24 1 -0.3633 -0.8479 0.5807 25 1 -0.3633 0.9268 0.4440 26 1 0.6039 2.4413 -0.1305 27 1 2.8589 3.8817 0.6959 28 1 3.0140 3.6371 -1.0603 29 1 2.3632 3.1234 -3.6547 30 1 2.8341 6.3852 0.1821 31 1 1.4522 7.0647 -0.8330 32 1 -0.2278 5.9567 0.7120 33 1 1.1535 5.2768 1.7273 34 1 4.1032 -0.8597 -0.8864 35 1 4.1026 -0.8626 0.8994 36 1 4.1189 -3.1989 1.0220 37 1 4.8187 -3.0638 -0.6228 38 1 2.5406 -4.4808 -0.2677 39 1 2.6757 -3.3815 -1.6809 40 1 1.3254 -2.8537 1.0235 41 1 0.6686 -2.5668 -0.6168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797767772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:55 Heat of formation + Delta-G solvation = -32.370715 kcal Electronic energy + Delta-G solvation = -20386.356503 eV Core-core repulsion = 17458.705176 eV Total energy + Delta-G solvation = -2927.651328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76884 -38.99640 -38.16358 -34.98159 -34.22332 -33.86223 -29.79547 -28.65799 -27.82105 -27.20834 -24.87753 -22.98918 -21.66737 -21.40514 -21.10592 -19.33217 -18.07422 -17.20730 -16.80892 -16.72423 -16.49762 -15.84083 -15.53338 -14.96125 -14.81071 -14.25842 -14.09567 -13.93079 -13.53224 -13.34310 -13.30004 -13.17063 -12.89675 -12.72867 -12.59028 -12.31903 -12.12647 -12.04552 -11.91062 -11.83343 -11.50770 -11.46026 -10.91397 -10.69317 -10.46440 -10.12457 -9.83432 -9.40939 -7.95258 -6.19690 0.55541 1.42736 1.45112 1.51783 2.41201 2.43501 2.72603 3.09496 3.56502 3.65817 3.80669 4.11280 4.17127 4.25486 4.26535 4.37979 4.52617 4.53124 4.72764 4.74174 4.78751 4.82926 4.86976 4.92149 4.94691 4.98222 5.08407 5.12705 5.16268 5.21303 5.23813 5.31196 5.42624 5.51831 5.56914 5.59776 5.79015 5.96407 5.96744 6.37033 6.79954 7.06178 7.45421 7.62323 8.92598 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.006054 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.032858 B = 4623.593611 C = 5263.450427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.199 4.199 3 C 0.535 3.465 4 O -0.603 6.603 5 N -0.676 5.676 6 C 0.178 3.822 7 C 0.006 3.994 8 C -0.503 4.503 9 H 0.060 0.940 10 C 0.036 3.964 11 N -0.891 5.891 12 Si 0.948 3.052 13 H -0.275 1.275 14 H -0.294 1.294 15 H -0.264 1.264 16 C -0.199 4.199 17 C -0.186 4.186 18 C -0.052 4.052 19 C -0.091 4.091 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.090 4.090 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.401 0.599 27 H 0.012 0.988 28 H 0.075 0.925 29 H 0.255 0.745 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -12.701 5.392 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.202 4.202 3 C 0.324 3.676 4 O -0.488 6.488 5 N -0.323 5.323 6 C 0.054 3.946 7 C 0.005 3.995 8 C -0.540 4.540 9 H 0.078 0.922 10 C -0.166 4.166 11 N -0.528 5.528 12 Si 0.774 3.226 13 H -0.201 1.201 14 H -0.220 1.220 15 H -0.189 1.189 16 C -0.238 4.238 17 C -0.223 4.223 18 C -0.054 4.054 19 C -0.128 4.128 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.127 4.127 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.237 0.763 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.611 -12.811 5.338 14.122 hybrid contribution -0.411 0.811 -1.049 1.389 sum -3.022 -11.999 4.289 13.096 Atomic orbital electron populations 1.20683 0.88841 1.03540 1.02736 1.21012 0.97511 0.91118 1.10531 1.18844 0.86974 0.85251 0.76490 1.90639 1.15810 1.88421 1.53939 1.45488 1.10343 1.05753 1.70691 1.20687 0.94254 0.82398 0.97239 1.19302 0.96934 0.88975 0.94239 1.20649 0.97346 1.36986 0.99029 0.92224 1.25602 0.96345 0.93930 1.00731 1.70083 1.17626 1.38710 1.26335 0.85776 0.79411 0.78136 0.79302 1.20078 1.22016 1.18890 1.22953 0.97511 0.99051 1.04284 1.22950 0.98168 1.06802 0.94370 1.23001 0.96294 0.94911 0.91239 1.21197 0.92931 0.97532 1.01188 1.22449 0.98739 0.92580 1.02090 1.22533 0.93261 0.99596 1.00122 1.21613 0.98903 0.89027 1.03126 0.91349 0.88678 0.91969 0.76283 0.97018 0.90688 0.93563 0.90796 0.90322 0.89536 0.89907 0.93357 0.92115 0.89983 0.90995 0.88288 0.91749 0.87724 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.79 9.10 71.23 0.65 -2.14 16 2 C -0.20 -7.04 6.00 -18.71 -0.11 -7.15 16 3 C 0.53 24.32 7.72 86.57 0.67 24.99 16 4 O -0.60 -31.28 14.15 -4.08 -0.06 -31.34 16 5 N -0.68 -30.99 4.97 -466.71 -2.32 -33.31 16 6 C 0.18 8.95 4.61 86.38 0.40 9.35 16 7 C 0.01 0.29 2.04 -52.92 -0.11 0.19 16 8 C -0.50 -25.59 8.39 25.60 0.21 -25.38 16 9 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 10 C 0.04 1.84 5.28 84.66 0.45 2.29 16 11 N -0.89 -49.42 10.20 21.45 0.22 -49.20 16 12 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 13 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 15 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 16 C -0.20 -8.72 9.96 30.62 0.30 -8.42 16 17 C -0.19 -7.54 9.92 30.62 0.30 -7.24 16 18 C -0.05 -1.62 6.12 -17.01 -0.10 -1.72 16 19 C -0.09 -2.95 4.82 30.52 0.15 -2.80 16 20 C -0.12 -2.64 6.88 31.71 0.22 -2.43 16 21 C -0.12 -2.13 6.94 31.92 0.22 -1.91 16 22 C -0.09 -1.82 5.71 30.86 0.18 -1.65 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.09 1.95 7.44 -2.39 -0.02 1.93 16 25 H 0.06 1.74 6.65 -2.39 -0.02 1.72 16 26 H 0.40 17.23 6.17 -92.72 -0.57 16.66 16 27 H 0.01 0.58 8.08 -2.39 -0.02 0.56 16 28 H 0.08 4.37 5.99 -2.39 -0.01 4.35 16 29 H 0.25 14.03 8.32 -92.71 -0.77 13.25 16 30 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.05 1.86 7.79 -2.38 -0.02 1.85 16 35 H 0.06 2.19 7.57 -2.39 -0.02 2.17 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 1.59 7.76 -2.39 -0.02 1.57 16 Total: -1.00 -63.15 328.66 3.73 -59.41 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.44 Total: 34.91 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 3.42 Total: -24.02 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.10 Total: -82.51 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.06 Total: -31.34 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -63.15 3.73 -59.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797767772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.044 kcal (2) G-P(sol) polarization free energy of solvation -63.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds