Wall clock time and date at job start Mon Mar 30 2020 00:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38255 * 120.00225 * 2 1 4 4 C 1.38208 * 120.00357 * 179.70539 * 3 2 1 5 5 C 1.38262 * 119.99554 * 359.97438 * 4 3 2 6 6 C 1.38205 * 120.00454 * 0.02863 * 5 4 3 7 7 C 1.50700 * 120.00223 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47344 * 144.99712 * 7 6 5 9 9 C 1.52998 * 109.46932 * 264.99687 * 7 6 5 10 10 N 1.46905 * 109.47168 * 24.99614 * 7 6 5 11 11 C 1.46897 * 110.99693 * 155.00009 * 10 7 6 12 12 C 1.53006 * 109.46861 * 180.02562 * 11 10 7 13 13 H 1.08996 * 109.47071 * 60.00012 * 12 11 10 14 14 O 1.42905 * 109.46900 * 300.00309 * 12 11 10 15 15 C 1.50694 * 109.47284 * 180.02562 * 12 11 10 16 16 H 1.08009 * 119.99958 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00338 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99522 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00153 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47080 * 59.99993 * 19 17 15 21 21 H 1.48506 * 109.46902 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47209 * 299.99735 * 19 17 15 23 23 C 1.38220 * 120.00039 * 179.72951 * 2 1 3 24 24 C 1.50706 * 119.99654 * 0.27115 * 23 2 1 25 25 H 1.09000 * 109.47344 * 89.99943 * 1 2 3 26 26 H 1.09003 * 109.46871 * 209.99873 * 1 2 3 27 27 H 1.09001 * 109.47017 * 329.99211 * 1 2 3 28 28 H 1.08000 * 119.99329 * 359.72712 * 3 2 1 29 29 H 1.07992 * 120.00457 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.99741 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47319 * 299.99685 * 9 7 6 32 32 H 1.08999 * 109.47206 * 60.00405 * 9 7 6 33 33 H 1.09005 * 109.47139 * 179.97438 * 9 7 6 34 34 H 1.00902 * 110.99435 * 31.04914 * 10 7 6 35 35 H 1.08998 * 109.47365 * 300.00072 * 11 10 7 36 36 H 1.08996 * 109.47269 * 60.00247 * 11 10 7 37 37 H 0.96698 * 113.99566 * 299.99729 * 14 12 11 38 38 H 0.97003 * 119.99295 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.46786 * 90.00331 * 24 23 2 40 40 H 1.08997 * 109.47118 * 210.00049 * 24 23 2 41 41 H 1.08996 * 109.47165 * 330.00477 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0062 5 6 4.2716 -0.0001 0.0128 6 6 3.5806 -1.1970 0.0128 7 6 4.3341 -2.5021 0.0195 8 1 3.7841 -3.2361 0.6084 9 6 4.4866 -3.0103 -1.4155 10 7 5.6634 -2.2970 0.6102 11 6 6.1868 -3.5478 1.1757 12 6 7.5691 -3.2947 1.7808 13 1 7.4894 -2.5453 2.5682 14 8 8.4555 -2.8242 0.7633 15 6 8.1063 -4.5779 2.3603 16 1 7.5206 -5.4835 2.3025 17 6 9.3460 -4.5961 2.9635 18 7 10.0599 -3.4937 3.0325 19 14 10.0116 -6.1865 3.6825 20 1 10.1195 -7.2077 2.6098 21 1 11.3539 -5.9412 4.2685 22 1 9.0909 -6.6750 4.7403 23 6 2.1981 -1.1970 0.0057 24 6 1.4445 -2.5021 0.0056 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.6583 2.1326 -0.0045 29 1 4.1204 2.1325 0.0066 30 1 5.3516 -0.0001 0.0181 31 1 3.5003 -3.1625 -1.8539 32 1 5.0366 -2.2763 -2.0044 33 1 5.0320 -3.9541 -1.4108 34 1 5.6410 -1.5670 1.3063 35 1 5.5109 -3.9064 1.9520 36 1 6.2660 -4.2973 0.3884 37 1 8.5742 -3.4418 0.0288 38 1 10.9320 -3.5065 3.4572 39 1 1.2672 -2.8192 -1.0220 40 1 2.0315 -3.2606 0.5237 41 1 0.4900 -2.3705 0.5152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809578016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:21 Heat of formation + Delta-G solvation = -38.707217 kcal Electronic energy + Delta-G solvation = -19792.614517 eV Core-core repulsion = 16864.688418 eV Total energy + Delta-G solvation = -2927.926099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92110 -36.86519 -35.08481 -33.36223 -32.13461 -31.92412 -29.54106 -27.75965 -27.19663 -26.31697 -24.38730 -22.73922 -20.94302 -20.33036 -19.59749 -16.89412 -16.34844 -15.98194 -15.28417 -14.71688 -14.55903 -14.22731 -14.10823 -13.66707 -13.45620 -13.33022 -12.92448 -12.89949 -12.61988 -12.41628 -12.00050 -11.92090 -11.87482 -11.59530 -11.46052 -11.11699 -10.89686 -10.82583 -10.80613 -10.64896 -10.26971 -10.03688 -8.97486 -8.55572 -8.51036 -8.47041 -8.03843 -7.75189 -5.98109 -4.16593 1.43362 1.45888 3.29995 3.35355 3.36891 3.80271 4.37381 4.61086 4.79018 4.85476 4.95182 5.07071 5.17842 5.29528 5.32708 5.36749 5.47633 5.55227 5.65802 5.69621 5.73221 5.80689 5.88910 5.97492 6.13086 6.15969 6.20698 6.26013 6.30750 6.46098 6.57141 6.61704 6.64193 6.77341 6.88481 7.12597 7.64525 7.72167 7.87237 7.97579 8.23383 8.87155 9.48846 9.65273 11.06021 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.003939 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.787436 B = 7107.405360 C = 7406.535870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.125 4.125 4 C -0.123 4.123 5 C -0.106 4.106 6 C -0.077 4.077 7 C 0.118 3.882 8 H 0.049 0.951 9 C -0.130 4.130 10 N -0.675 5.675 11 C 0.034 3.966 12 C 0.236 3.764 13 H 0.051 0.949 14 O -0.554 6.554 15 C -0.574 4.574 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.085 4.085 24 C -0.120 4.120 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.137 0.863 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.338 0.662 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.343 0.657 38 H 0.261 0.739 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.602 5.734 -7.051 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.124 4.124 6 C -0.078 4.078 7 C 0.009 3.991 8 H 0.066 0.934 9 C -0.188 4.188 10 N -0.307 5.307 11 C -0.095 4.095 12 C 0.177 3.823 13 H 0.068 0.932 14 O -0.356 6.356 15 C -0.613 4.613 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.717 3.283 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.085 4.085 24 C -0.177 4.177 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.155 0.845 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.157 0.843 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.186 0.814 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.064 6.270 -7.170 19.543 hybrid contribution -0.163 -1.425 0.948 1.719 sum -17.227 4.845 -6.221 18.946 Atomic orbital electron populations 1.20820 0.91642 1.02564 1.02030 1.19659 0.95646 0.92663 1.01388 1.20948 0.94364 0.97089 1.01909 1.21137 0.94126 0.98127 1.00705 1.21195 1.01095 0.91387 0.98703 1.19905 0.92707 0.95394 0.99753 1.20495 0.89427 0.92458 0.96767 0.93371 1.21709 1.00565 1.01426 0.95068 1.60648 1.21426 1.09656 1.38927 1.22946 0.99403 0.90126 0.96980 1.19282 0.82311 0.94444 0.86224 0.93157 1.86550 1.68646 1.46629 1.33789 1.21609 1.03457 0.95948 1.40274 0.92809 1.25026 0.96790 0.95982 0.94851 1.70078 1.11531 1.26529 1.41277 0.86736 0.78127 0.83998 0.79480 1.20145 1.21193 1.20233 1.19555 0.93054 0.94805 1.01110 1.20925 0.99864 0.94635 1.02240 0.91469 0.91325 0.91903 0.86587 0.86219 0.84523 0.93257 0.91995 0.92346 0.84306 0.96101 0.92042 0.81387 0.92960 0.91221 0.91230 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.61 36.01 0.35 -0.64 16 2 C -0.09 -1.09 5.88 -104.62 -0.62 -1.70 16 3 C -0.13 -1.45 9.70 -39.59 -0.38 -1.83 16 4 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 5 C -0.11 -1.50 8.86 -39.58 -0.35 -1.85 16 6 C -0.08 -1.10 4.93 -104.63 -0.52 -1.61 16 7 C 0.12 1.79 2.33 -68.86 -0.16 1.63 16 8 H 0.05 0.74 5.82 -51.93 -0.30 0.43 16 9 C -0.13 -1.83 9.40 37.16 0.35 -1.48 16 10 N -0.67 -12.14 5.43 -107.95 -0.59 -12.73 16 11 C 0.03 0.71 5.09 -3.82 -0.02 0.69 16 12 C 0.24 5.99 3.03 -27.88 -0.08 5.91 16 13 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 14 O -0.55 -14.52 12.59 -35.23 -0.44 -14.97 16 15 C -0.57 -15.86 8.76 -34.44 -0.30 -16.16 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 18 N -0.86 -25.60 12.84 55.43 0.71 -24.89 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.08 -1.08 5.88 -104.62 -0.62 -1.69 16 24 C -0.12 -1.26 8.98 36.01 0.32 -0.94 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 27 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.14 2.06 6.97 -52.49 -0.37 1.70 16 31 H 0.05 0.60 7.92 -51.93 -0.41 0.19 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.85 7.45 -51.93 -0.39 0.46 16 34 H 0.34 6.18 7.26 -39.29 -0.29 5.90 16 35 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 36 H 0.06 1.25 7.43 -51.93 -0.39 0.87 16 37 H 0.34 8.15 9.04 45.56 0.41 8.56 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.77 6.03 -51.93 -0.31 0.45 16 41 H 0.07 0.60 5.94 -51.93 -0.31 0.29 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -30.44 330.29 -8.46 -38.90 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.57 Total: 11.92 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.52 Total: -19.45 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.12 Total: -37.62 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.44 Total: -14.97 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.44 -8.46 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809578016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.193 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds