Wall clock time and date at job start Mon Mar 30 2020 00:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38255 * 120.00225 * 2 1 4 4 C 1.38208 * 120.00357 * 179.70539 * 3 2 1 5 5 C 1.38262 * 119.99554 * 359.97438 * 4 3 2 6 6 C 1.38205 * 120.00454 * 0.02863 * 5 4 3 7 7 C 1.50700 * 120.00223 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47344 * 144.99712 * 7 6 5 9 9 C 1.52998 * 109.46932 * 264.99687 * 7 6 5 10 10 N 1.46905 * 109.47168 * 24.99614 * 7 6 5 11 11 C 1.46897 * 110.99693 * 155.00009 * 10 7 6 12 12 C 1.53006 * 109.46861 * 180.02562 * 11 10 7 13 13 H 1.08996 * 109.47071 * 60.00012 * 12 11 10 14 14 O 1.42905 * 109.46900 * 300.00309 * 12 11 10 15 15 C 1.50694 * 109.47284 * 180.02562 * 12 11 10 16 16 H 1.08009 * 119.99958 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00338 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99522 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00153 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47080 * 59.99993 * 19 17 15 21 21 H 1.48506 * 109.46902 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47209 * 299.99735 * 19 17 15 23 23 C 1.38220 * 120.00039 * 179.72951 * 2 1 3 24 24 C 1.50706 * 119.99654 * 0.27115 * 23 2 1 25 25 H 1.09000 * 109.47344 * 89.99943 * 1 2 3 26 26 H 1.09003 * 109.46871 * 209.99873 * 1 2 3 27 27 H 1.09001 * 109.47017 * 329.99211 * 1 2 3 28 28 H 1.08000 * 119.99329 * 359.72712 * 3 2 1 29 29 H 1.07992 * 120.00457 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.99741 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47319 * 299.99685 * 9 7 6 32 32 H 1.08999 * 109.47206 * 60.00405 * 9 7 6 33 33 H 1.09005 * 109.47139 * 179.97438 * 9 7 6 34 34 H 1.00902 * 110.99435 * 31.04914 * 10 7 6 35 35 H 1.08998 * 109.47365 * 300.00072 * 11 10 7 36 36 H 1.08996 * 109.47269 * 60.00247 * 11 10 7 37 37 H 0.96698 * 113.99566 * 299.99729 * 14 12 11 38 38 H 0.97003 * 119.99295 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.46786 * 90.00331 * 24 23 2 40 40 H 1.08997 * 109.47118 * 210.00049 * 24 23 2 41 41 H 1.08996 * 109.47165 * 330.00477 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0062 5 6 4.2716 -0.0001 0.0128 6 6 3.5806 -1.1970 0.0128 7 6 4.3341 -2.5021 0.0195 8 1 3.7841 -3.2361 0.6084 9 6 4.4866 -3.0103 -1.4155 10 7 5.6634 -2.2970 0.6102 11 6 6.1868 -3.5478 1.1757 12 6 7.5691 -3.2947 1.7808 13 1 7.4894 -2.5453 2.5682 14 8 8.4555 -2.8242 0.7633 15 6 8.1063 -4.5779 2.3603 16 1 7.5206 -5.4835 2.3025 17 6 9.3460 -4.5961 2.9635 18 7 10.0599 -3.4937 3.0325 19 14 10.0116 -6.1865 3.6825 20 1 10.1195 -7.2077 2.6098 21 1 11.3539 -5.9412 4.2685 22 1 9.0909 -6.6750 4.7403 23 6 2.1981 -1.1970 0.0057 24 6 1.4445 -2.5021 0.0056 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.6583 2.1326 -0.0045 29 1 4.1204 2.1325 0.0066 30 1 5.3516 -0.0001 0.0181 31 1 3.5003 -3.1625 -1.8539 32 1 5.0366 -2.2763 -2.0044 33 1 5.0320 -3.9541 -1.4108 34 1 5.6410 -1.5670 1.3063 35 1 5.5109 -3.9064 1.9520 36 1 6.2660 -4.2973 0.3884 37 1 8.5742 -3.4418 0.0288 38 1 10.9320 -3.5065 3.4572 39 1 1.2672 -2.8192 -1.0220 40 1 2.0315 -3.2606 0.5237 41 1 0.4900 -2.3705 0.5152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809578016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:20 Heat of formation + Delta-G solvation = -58.663230 kcal Electronic energy + Delta-G solvation = -19793.479875 eV Core-core repulsion = 16864.688418 eV Total energy + Delta-G solvation = -2928.791457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91808 -38.45740 -36.74176 -34.25774 -34.22533 -33.26968 -30.83152 -29.23335 -28.41367 -27.16003 -26.14830 -23.99160 -22.48624 -21.59637 -20.71671 -18.95987 -17.54502 -17.09507 -16.66109 -16.54659 -16.01331 -15.66995 -15.32272 -15.08882 -14.83933 -14.63890 -14.18252 -13.81686 -13.64513 -13.44705 -13.39180 -13.14005 -12.95687 -12.90165 -12.76767 -12.67848 -12.62784 -12.46193 -12.23169 -12.00579 -11.65516 -11.39791 -11.02445 -10.70580 -10.08596 -9.48599 -9.39933 -9.24061 -8.13057 -6.39526 0.46160 0.49676 1.40726 1.42665 1.50843 2.38812 2.83648 3.12614 3.27264 3.70714 3.97590 4.05303 4.20502 4.22764 4.29825 4.37295 4.41649 4.51526 4.54185 4.65701 4.71609 4.74472 4.86213 4.90324 4.91909 4.97196 5.04102 5.06310 5.10246 5.23728 5.37108 5.43571 5.59920 5.64406 5.65215 5.74592 5.78566 6.04605 6.17521 6.26051 6.46964 6.74116 7.34789 7.61748 8.91313 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.003939 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.787436 B = 7107.405360 C = 7406.535870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.127 4.127 4 C -0.130 4.130 5 C -0.127 4.127 6 C -0.093 4.093 7 C 0.121 3.879 8 H 0.051 0.949 9 C -0.124 4.124 10 N -0.678 5.678 11 C 0.055 3.945 12 C 0.235 3.765 13 H 0.015 0.985 14 O -0.569 6.569 15 C -0.590 4.590 16 H 0.060 0.940 17 C 0.025 3.975 18 N -0.900 5.900 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.268 1.268 23 C -0.094 4.094 24 C -0.119 4.119 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.334 0.666 35 H 0.020 0.980 36 H 0.067 0.933 37 H 0.353 0.647 38 H 0.261 0.739 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.770 5.094 -7.449 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.094 4.094 7 C 0.012 3.988 8 H 0.069 0.931 9 C -0.182 4.182 10 N -0.310 5.310 11 C -0.074 4.074 12 C 0.177 3.823 13 H 0.033 0.967 14 O -0.373 6.373 15 C -0.628 4.628 16 H 0.078 0.922 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.786 3.214 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.095 4.095 24 C -0.175 4.175 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.160 0.840 29 H 0.152 0.848 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.152 0.848 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.197 0.803 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.255 5.620 -7.582 21.443 hybrid contribution 0.452 -1.136 1.042 1.607 sum -18.803 4.484 -6.540 20.407 Atomic orbital electron populations 1.20881 0.89200 1.03658 1.03133 1.20081 0.97475 0.92167 0.99960 1.21299 0.93990 0.98389 1.00785 1.21347 0.94988 0.98014 1.00485 1.21145 1.00355 0.92523 1.00532 1.19864 0.93599 0.94576 1.01340 1.20516 0.87834 0.93467 0.96973 0.93141 1.21666 1.01638 1.00580 0.94306 1.60597 1.23772 1.08215 1.38394 1.22523 0.96695 0.91343 0.96838 1.19153 0.84739 0.92667 0.85729 0.96702 1.86495 1.69297 1.47219 1.34245 1.22015 1.03795 0.96794 1.40169 0.92214 1.25920 0.97149 0.99486 0.95177 1.70226 1.11955 1.28985 1.42509 0.85590 0.77346 0.79598 0.78893 1.19100 1.21022 1.19319 1.19833 0.92472 0.96397 1.00769 1.20963 1.00228 0.93194 1.03130 0.90209 0.90499 0.90616 0.84024 0.84841 0.86485 0.90983 0.93085 0.92940 0.84795 0.96137 0.91503 0.80327 0.92997 0.90008 0.92101 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.61 71.24 0.68 -0.86 16 2 C -0.10 -2.02 5.88 -19.86 -0.12 -2.14 16 3 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16 4 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 5 C -0.13 -3.69 8.86 22.27 0.20 -3.50 16 6 C -0.09 -2.63 4.93 -19.87 -0.10 -2.73 16 7 C 0.12 3.65 2.33 44.17 0.10 3.76 16 8 H 0.05 1.51 5.82 -2.39 -0.01 1.50 16 9 C -0.12 -3.41 9.40 71.98 0.68 -2.73 16 10 N -0.68 -25.03 5.43 -495.45 -2.69 -27.73 16 11 C 0.06 2.32 5.09 86.31 0.44 2.75 16 12 C 0.24 12.31 3.03 29.85 0.09 12.40 16 13 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 14 O -0.57 -30.68 12.59 -148.98 -1.88 -32.56 16 15 C -0.59 -32.83 8.76 25.60 0.22 -32.61 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 17 C 0.03 1.42 5.40 84.65 0.46 1.88 16 18 N -0.90 -54.72 12.84 21.45 0.28 -54.45 16 19 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C -0.09 -2.24 5.88 -19.86 -0.12 -2.35 16 24 C -0.12 -2.21 8.98 71.24 0.64 -1.57 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.94 5.94 -2.39 -0.01 0.93 16 27 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 28 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.12 3.76 6.97 -2.91 -0.02 3.74 16 31 H 0.07 1.63 7.92 -2.39 -0.02 1.61 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.48 7.45 -2.38 -0.02 1.46 16 34 H 0.33 12.80 7.26 -89.69 -0.65 12.14 16 35 H 0.02 0.85 8.05 -2.39 -0.02 0.83 16 36 H 0.07 2.72 7.43 -2.39 -0.02 2.70 16 37 H 0.35 17.10 9.04 -74.06 -0.67 16.43 16 38 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.24 6.03 -2.39 -0.01 1.22 16 41 H 0.08 1.26 5.94 -2.39 -0.01 1.24 16 Total: -1.00 -65.64 330.29 1.07 -64.58 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -0.29 Total: 37.57 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 3.62 Total: -33.11 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.42 Total: -82.17 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.88 Total: -32.56 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -65.64 1.07 -64.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809578016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.914 kcal (2) G-P(sol) polarization free energy of solvation -65.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds