Wall clock time and date at job start Mon Mar 30 2020 00:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47104 * 120.00239 * 2 1 4 4 O 1.21606 * 119.99932 * 230.01279 * 3 2 1 5 5 N 1.34774 * 119.99637 * 50.00740 * 3 2 1 6 6 C 1.46502 * 120.00322 * 5.26539 * 5 3 2 7 7 C 1.50700 * 109.47404 * 84.49155 * 6 5 3 8 8 H 1.08003 * 119.99839 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00244 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99767 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99880 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47033 * 60.00194 * 11 9 7 13 13 H 1.48505 * 109.46768 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47045 * 299.99634 * 11 9 7 15 15 C 1.46497 * 120.00155 * 185.26097 * 5 3 2 16 16 C 1.53005 * 109.47188 * 85.07083 * 15 5 3 17 17 C 1.52995 * 117.49907 * 245.91228 * 16 15 5 18 18 C 1.53001 * 117.49894 * 177.25061 * 16 15 5 19 19 C 1.33001 * 120.00212 * 180.02562 * 2 1 3 20 20 C 1.51579 * 135.77971 * 359.97438 * 19 2 1 21 21 C 1.53835 * 86.75586 * 205.13564 * 20 19 2 22 22 C 1.51577 * 135.78545 * 179.97438 * 19 2 1 23 23 H 1.09000 * 109.47268 * 242.46039 * 1 2 3 24 24 H 1.08998 * 109.46790 * 2.46572 * 1 2 3 25 25 H 1.09005 * 109.46778 * 122.46354 * 1 2 3 26 26 H 1.09000 * 109.47377 * 204.49796 * 6 5 3 27 27 H 1.09004 * 109.46755 * 324.49444 * 6 5 3 28 28 H 0.96992 * 119.99857 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.47420 * 205.07781 * 15 5 3 30 30 H 1.09001 * 109.46785 * 325.07340 * 15 5 3 31 31 H 1.08997 * 115.54679 * 31.58617 * 16 15 5 32 32 H 1.09000 * 117.50342 * 0.02562 * 17 16 15 33 33 H 1.09005 * 117.49726 * 145.02479 * 17 16 15 34 34 H 1.09002 * 117.49685 * 214.98605 * 18 16 15 35 35 H 1.08998 * 117.49691 * 0.02562 * 18 16 15 36 36 H 1.09000 * 113.66745 * 90.66839 * 20 19 2 37 37 H 1.09003 * 113.66463 * 319.60403 * 20 19 2 38 38 H 1.09003 * 113.65361 * 89.68809 * 21 20 19 39 39 H 1.08996 * 113.66259 * 220.72650 * 21 20 19 40 40 H 1.09002 * 113.66428 * 40.40051 * 22 19 2 41 41 H 1.08999 * 113.66748 * 269.33518 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.1327 1.4621 -0.8069 5 7 1.9298 2.2325 0.8942 6 6 0.9385 1.9645 1.9390 7 6 1.6084 1.2831 3.1044 8 1 2.6669 1.0713 3.0703 9 6 0.8701 0.9301 4.2140 10 7 -0.4188 1.1884 4.2556 11 14 1.7007 0.0861 5.6587 12 1 2.7652 0.9678 6.2017 13 1 0.6957 -0.1857 6.7177 14 1 2.3015 -1.1940 5.2054 15 6 2.5813 3.5427 0.8216 16 6 1.8299 4.4316 -0.1715 17 6 2.5653 4.8423 -1.4487 18 6 2.3197 5.8710 -0.3420 19 6 2.1720 -1.1518 -0.0005 20 6 1.7997 -2.6212 -0.0007 21 6 3.1692 -2.8784 0.6511 22 6 3.6307 -1.5641 -0.0012 23 1 -0.3634 -0.4751 0.9112 24 1 -0.3633 1.0267 -0.0442 25 1 -0.3633 -0.5516 -0.8671 26 1 0.4981 2.9043 2.2718 27 1 0.1566 1.3178 1.5406 28 1 -0.9383 0.9397 5.0360 29 1 2.5707 4.0089 1.8068 30 1 3.6121 3.4179 0.4898 31 1 0.7571 4.2531 -0.2437 32 1 3.5844 4.4790 -1.5817 33 1 1.9762 4.9345 -2.3611 34 1 1.5690 6.6395 -0.5268 35 1 3.1774 6.1846 0.2529 36 1 1.7032 -3.0479 -0.9990 37 1 0.9555 -2.8587 0.6466 38 1 3.1488 -2.8423 1.7403 39 1 3.6787 -3.7611 0.2647 40 1 4.2587 -0.9516 0.6458 41 1 4.0482 -1.6940 -0.9996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825699462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:33 Heat of formation + Delta-G solvation = 24.948478 kcal Electronic energy + Delta-G solvation = -20584.655405 eV Core-core repulsion = 17659.489624 eV Total energy + Delta-G solvation = -2925.165781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.44279 -37.95021 -36.73010 -34.70880 -32.43946 -32.36571 -27.77846 -26.50552 -25.87213 -25.13710 -23.11027 -22.13762 -21.83983 -20.49472 -19.08655 -17.13460 -16.47569 -16.01283 -15.46794 -15.13949 -14.75039 -14.55283 -14.34769 -13.77573 -13.27286 -12.92538 -12.75111 -12.18147 -12.09832 -11.95891 -11.87402 -11.49323 -11.29795 -11.25138 -11.15137 -11.09418 -10.91398 -10.56870 -10.48685 -10.25676 -10.04052 -10.00840 -9.64973 -9.56437 -8.91250 -8.47530 -8.15332 -7.63593 -6.13653 -4.18659 2.27313 3.25469 3.30118 3.33016 3.68818 3.95265 4.23392 4.36741 4.89702 4.94731 5.10133 5.12537 5.19669 5.25605 5.33938 5.46041 5.59653 5.80004 5.82963 5.86546 5.92131 6.00494 6.10109 6.13784 6.16571 6.18001 6.24301 6.28426 6.39041 6.41573 6.51384 6.61130 6.62620 6.83014 6.87899 7.28735 7.34172 7.63431 7.82011 8.13728 8.40383 8.85044 9.10177 9.47421 10.93214 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.008975 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.154863 B = 3118.995058 C = 4657.695489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.114 4.114 3 C 0.563 3.437 4 O -0.569 6.569 5 N -0.589 5.589 6 C 0.222 3.778 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.065 3.935 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.150 3.850 16 C -0.160 4.160 17 C -0.173 4.173 18 C -0.181 4.181 19 C -0.113 4.113 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.098 4.098 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -1.039 -7.532 7.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.352 3.648 4 O -0.450 6.450 5 N -0.319 5.319 6 C 0.103 3.897 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.137 4.137 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.026 3.974 16 C -0.179 4.179 17 C -0.210 4.210 18 C -0.219 4.219 19 C -0.114 4.114 20 C -0.136 4.136 21 C -0.175 4.175 22 C -0.135 4.135 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.542 -0.943 -7.786 8.244 hybrid contribution 0.263 -0.358 1.135 1.219 sum 2.805 -1.301 -6.650 7.334 Atomic orbital electron populations 1.20709 0.90501 1.02558 1.01797 1.20330 0.95881 0.91456 1.04023 1.18231 0.82378 0.83732 0.80414 1.90668 1.32202 1.81273 1.40901 1.48144 1.42376 1.11126 1.30205 1.19819 0.87384 0.97778 0.84751 1.21431 0.95517 1.38918 1.00858 0.92528 1.24881 0.94787 0.95750 0.98277 1.69905 1.05908 1.47223 1.30164 0.86639 0.79199 0.80160 0.81984 1.20230 1.21160 1.20159 1.20838 0.95665 0.82797 0.98075 1.22793 0.99978 0.95961 0.99211 1.22947 1.01891 1.03336 0.92807 1.22914 1.03351 0.92290 1.03322 1.22795 0.96781 0.93319 0.98545 1.22154 0.98079 0.92631 1.00763 1.22758 0.96744 0.97345 1.00667 1.22101 0.94425 0.96181 1.00791 0.90180 0.91501 0.92512 0.94850 0.92489 0.92615 0.90067 0.91118 0.87966 0.88718 0.89569 0.89191 0.88964 0.89317 0.90687 0.89847 0.91404 0.91130 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 8.07 36.01 0.29 -1.49 16 2 C -0.11 -2.30 5.15 -102.84 -0.53 -2.83 16 3 C 0.56 12.47 6.92 -12.66 -0.09 12.38 16 4 O -0.57 -13.40 16.51 5.27 0.09 -13.32 16 5 N -0.59 -12.83 2.48 -176.45 -0.44 -13.27 16 6 C 0.22 5.32 4.76 -5.19 -0.02 5.30 16 7 C -0.53 -13.97 9.33 -34.44 -0.32 -14.29 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 11 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.15 2.88 5.66 -4.04 -0.02 2.85 16 16 C -0.16 -2.67 5.98 -90.62 -0.54 -3.21 16 17 C -0.17 -2.58 10.18 -26.69 -0.27 -2.86 16 18 C -0.18 -2.46 10.26 -26.69 -0.27 -2.73 16 19 C -0.11 -2.08 6.56 -100.39 -0.66 -2.74 16 20 C -0.10 -1.46 7.94 -27.02 -0.21 -1.67 16 21 C -0.14 -1.98 8.11 -25.96 -0.21 -2.19 16 22 C -0.10 -1.65 7.79 -27.03 -0.21 -1.86 16 23 H 0.08 1.52 7.84 -51.93 -0.41 1.12 16 24 H 0.07 1.22 6.73 -51.93 -0.35 0.87 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 27 H 0.06 1.37 3.82 -51.93 -0.20 1.17 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 30 H 0.07 1.38 7.25 -51.93 -0.38 1.00 16 31 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -29.03 340.72 -9.45 -38.49 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.78 Total: 4.62 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -3.17 Total: -13.70 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.30 Total: -37.05 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.03 -9.45 -38.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825699462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.434 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds