Wall clock time and date at job start Mon Mar 30 2020 00:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.47098 * 120.00295 * 2 1 4 4 O 1.21622 * 120.00002 * 98.19424 * 3 2 1 5 5 N 1.34780 * 120.00044 * 277.92382 * 3 2 1 6 6 C 1.46921 * 120.62901 * 177.40705 * 5 3 2 7 7 C 1.53623 * 108.54612 * 126.36922 * 6 5 3 8 8 C 1.53045 * 109.24160 * 54.84964 * 7 6 5 9 9 C 1.50696 * 109.44729 * 178.50103 * 8 7 6 10 10 H 1.08006 * 119.99843 * 120.06948 * 9 8 7 11 11 C 1.37878 * 120.00280 * 300.06009 * 9 8 7 12 12 N 1.31512 * 120.00189 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99683 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47070 * 89.99940 * 13 11 9 15 15 H 1.48504 * 109.46900 * 209.99695 * 13 11 9 16 16 H 1.48500 * 109.47260 * 329.99667 * 13 11 9 17 17 C 1.53038 * 109.53818 * 298.51643 * 8 7 6 18 18 C 1.46925 * 120.62685 * 357.68179 * 5 3 2 19 19 C 1.33001 * 120.00181 * 179.97438 * 2 1 3 20 20 C 1.51403 * 136.32074 * 179.62812 * 19 2 1 21 21 C 1.53370 * 87.51958 * 206.06492 * 20 19 2 22 22 C 1.51412 * 136.31181 * 0.02562 * 19 2 1 23 23 H 1.09001 * 109.46961 * 83.22009 * 1 2 3 24 24 H 1.09001 * 109.47541 * 203.22028 * 1 2 3 25 25 H 1.09002 * 109.47648 * 323.22365 * 1 2 3 26 26 H 1.08999 * 109.58666 * 246.19904 * 6 5 3 27 27 H 1.09005 * 109.59117 * 6.62477 * 6 5 3 28 28 H 1.08998 * 109.63120 * 294.86556 * 7 6 5 29 29 H 1.08993 * 109.43562 * 174.71783 * 7 6 5 30 30 H 1.08998 * 109.45846 * 58.53465 * 8 7 6 31 31 H 0.97002 * 120.00034 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.49642 * 301.40901 * 17 8 7 33 33 H 1.09000 * 109.49680 * 181.31646 * 17 8 7 34 34 H 1.08998 * 109.58686 * 353.37873 * 18 5 3 35 35 H 1.09007 * 109.58027 * 113.65967 * 18 5 3 36 36 H 1.08997 * 113.56103 * 320.64702 * 20 19 2 37 37 H 1.09005 * 113.55846 * 91.37557 * 20 19 2 38 38 H 1.09003 * 113.96999 * 220.29342 * 21 20 19 39 39 H 1.08999 * 113.71568 * 88.80906 * 21 20 19 40 40 H 1.08994 * 113.55783 * 268.61998 * 22 19 2 41 41 H 1.08994 * 113.56089 * 39.35584 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 2.6766 1.7254 1.0425 5 7 2.4401 1.9379 -1.1561 6 6 3.1231 3.2387 -1.1648 7 6 4.2907 3.1708 -2.1608 8 6 3.7626 2.7293 -3.5277 9 6 4.8984 2.6967 -4.5177 10 1 5.1552 1.7727 -5.0146 11 6 5.6095 3.8463 -4.7893 12 7 6.6003 3.8179 -5.6536 13 14 5.1655 5.4442 -3.9295 14 1 5.9406 5.5595 -2.6682 15 1 5.4900 6.5902 -4.8164 16 1 3.7130 5.4531 -3.6206 17 6 3.1469 1.3331 -3.4119 18 6 1.9713 1.3775 -2.4308 19 6 2.1720 -1.1518 0.0005 20 6 3.6250 -1.5772 -0.0061 21 6 3.1707 -2.8820 -0.6720 22 6 1.8137 -2.6229 0.0007 23 1 -0.3633 0.1213 -1.0205 24 1 -0.3634 -0.9444 0.4052 25 1 -0.3634 0.8231 0.6152 26 1 2.4235 4.0167 -1.4703 27 1 3.5041 3.4582 -0.1674 28 1 5.0317 2.4534 -1.8081 29 1 4.7500 4.1554 -2.2489 30 1 3.0039 3.4337 -3.8686 31 1 7.1008 4.6266 -5.8444 32 1 3.8987 0.6330 -3.0475 33 1 2.7920 1.0097 -4.3905 34 1 1.5920 0.3686 -2.2689 35 1 1.1778 2.0055 -2.8361 36 1 4.2566 -0.9606 -0.6454 37 1 4.0420 -1.7190 0.9910 38 1 3.6834 -3.7699 -0.3018 39 1 3.1394 -2.8310 -1.7603 40 1 1.7336 -3.0516 0.9996 41 1 0.9603 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828947049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:49 Heat of formation + Delta-G solvation = -22.180619 kcal Electronic energy + Delta-G solvation = -20663.871732 eV Core-core repulsion = 17736.662280 eV Total energy + Delta-G solvation = -2927.209452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40681 -39.52508 -38.49345 -35.42442 -34.22061 -33.16948 -31.96185 -28.47375 -27.46486 -26.40733 -24.99492 -24.49864 -23.15953 -21.67215 -20.46419 -18.90192 -18.84874 -17.61974 -17.02943 -16.67199 -16.43923 -16.20572 -15.53060 -15.15756 -14.91534 -14.80813 -14.38887 -14.05304 -13.88322 -13.74282 -13.50606 -13.35821 -13.22196 -12.91001 -12.85237 -12.49659 -12.33543 -12.14112 -11.84273 -11.80791 -11.51779 -11.41455 -11.17475 -11.10528 -10.76627 -10.64038 -9.71012 -9.66138 -8.31426 -6.34927 0.78059 1.29430 1.33299 1.43390 1.50434 2.05698 2.30345 3.04007 3.27968 3.57330 3.79177 3.88722 3.95182 4.14119 4.18296 4.22723 4.25530 4.38644 4.45270 4.52295 4.66767 4.74108 4.76462 4.77144 4.78560 4.83504 4.92034 4.97535 5.01349 5.03016 5.07851 5.11532 5.31593 5.37751 5.40103 5.55396 5.64745 5.69018 5.81069 6.29105 6.39464 6.72340 7.05925 7.30646 8.85344 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.005797 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.337988 B = 4829.121437 C = 5296.455946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.157 4.157 3 C 0.557 3.443 4 O -0.592 6.592 5 N -0.599 5.599 6 C 0.111 3.889 7 C -0.128 4.128 8 C 0.014 3.986 9 C -0.516 4.516 10 H 0.034 0.966 11 C 0.011 3.989 12 N -0.951 5.951 13 Si 0.943 3.057 14 H -0.274 1.274 15 H -0.299 1.299 16 H -0.237 1.237 17 C -0.107 4.107 18 C 0.114 3.886 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.081 4.081 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.029 -11.380 10.548 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.160 4.160 3 C 0.347 3.653 4 O -0.474 6.474 5 N -0.330 5.330 6 C -0.012 4.012 7 C -0.166 4.166 8 C -0.005 4.005 9 C -0.554 4.554 10 H 0.053 0.947 11 C -0.186 4.186 12 N -0.591 5.591 13 Si 0.771 3.229 14 H -0.200 1.200 15 H -0.226 1.226 16 H -0.160 1.160 17 C -0.145 4.145 18 C -0.008 4.008 19 C -0.120 4.120 20 C -0.164 4.164 21 C -0.165 4.165 22 C -0.118 4.118 23 H 0.106 0.894 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.685 -11.051 10.976 21.407 hybrid contribution 1.105 1.257 -0.082 1.675 sum -13.581 -9.795 10.893 19.976 Atomic orbital electron populations 1.20645 0.86924 1.03868 1.03511 1.20406 0.97786 0.89479 1.08345 1.19086 0.78554 0.85005 0.82642 1.90733 1.53247 1.70208 1.33212 1.48279 1.56455 1.20610 1.07613 1.21717 0.94569 0.84960 0.99931 1.22283 0.97145 0.99960 0.97216 1.19117 0.94952 0.95294 0.91158 1.21375 1.15299 0.95630 1.23094 0.94743 1.25884 0.94523 1.02638 0.95527 1.70047 1.22644 1.29861 1.36552 0.85918 0.80892 0.78599 0.77534 1.20047 1.22647 1.16027 1.21707 0.96722 0.97069 0.98993 1.21962 0.96465 1.00467 0.81886 1.23363 0.97753 0.95254 0.95668 1.22329 0.93961 0.98505 1.01572 1.22634 0.96939 0.96565 1.00364 1.22183 0.98560 0.88427 1.02610 0.89417 0.89002 0.92116 0.90012 0.90596 0.93770 0.93537 0.94658 0.92648 0.93965 0.90422 0.87785 0.89371 0.93681 0.88578 0.88845 0.89697 0.87046 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.99 71.23 0.71 -0.88 16 2 C -0.16 -3.95 3.71 -18.71 -0.07 -4.02 16 3 C 0.56 18.85 7.01 86.57 0.61 19.46 16 4 O -0.59 -24.72 16.52 -4.10 -0.07 -24.79 16 5 N -0.60 -19.77 2.97 -822.34 -2.44 -22.21 16 6 C 0.11 4.01 6.47 86.51 0.56 4.57 16 7 C -0.13 -5.46 4.86 30.82 0.15 -5.31 16 8 C 0.01 0.60 1.65 -11.51 -0.02 0.59 16 9 C -0.52 -28.87 9.14 25.60 0.23 -28.63 16 10 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 11 C 0.01 0.65 5.45 84.66 0.46 1.11 16 12 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 13 Si 0.94 44.65 24.38 68.60 1.67 46.32 16 14 H -0.27 -12.68 6.86 99.48 0.68 -12.00 16 15 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 16 H -0.24 -10.05 6.53 99.48 0.65 -9.40 16 17 C -0.11 -3.84 5.30 30.67 0.16 -3.68 16 18 C 0.11 3.18 6.33 86.36 0.55 3.73 16 19 C -0.12 -2.70 6.64 -17.17 -0.11 -2.81 16 20 C -0.13 -3.02 7.83 30.06 0.24 -2.79 16 21 C -0.13 -2.11 8.17 30.94 0.25 -1.86 16 22 C -0.08 -1.16 7.59 30.16 0.23 -0.93 16 23 H 0.09 1.21 7.93 -2.39 -0.02 1.19 16 24 H 0.09 1.16 7.74 -2.39 -0.02 1.14 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.08 2.87 7.00 -2.38 -0.02 2.85 16 28 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 2.07 3.24 -2.39 -0.01 2.07 16 30 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 31 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.10 2.38 6.12 -2.39 -0.01 2.36 16 35 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.03 321.68 4.33 -67.70 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.92 Total: 13.70 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 3.95 Total: -21.46 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -2.14 Total: -81.47 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.07 Total: -24.79 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.67 Total: 46.32 kcal Total: -72.03 4.33 -67.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828947049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.520 kcal (2) G-P(sol) polarization free energy of solvation -72.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds