Wall clock time and date at job start Mon Mar 30 2020 00:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53070 * 109.44262 * 78.57536 * 3 2 1 5 5 C 1.53195 * 109.29524 * 181.23507 * 4 3 2 6 6 N 1.46919 * 108.89273 * 305.57804 * 5 4 3 7 7 C 1.34783 * 120.63144 * 233.55709 * 6 5 4 8 8 O 1.21274 * 119.99655 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99922 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47009 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47521 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47358 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46846 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00490 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00295 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00007 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46859 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47626 * 119.99792 * 17 15 13 20 20 H 1.48504 * 109.46889 * 240.00244 * 17 15 13 21 21 C 1.46928 * 118.73982 * 53.53793 * 6 5 4 22 22 C 1.53039 * 109.45970 * 198.77973 * 3 2 1 23 23 H 4.44630 * 5.63755 * 179.97438 * 4 1 2 24 24 H 1.09007 * 109.45931 * 318.74725 * 3 2 1 25 25 H 1.08997 * 109.38860 * 61.35694 * 4 3 2 26 26 H 1.09003 * 109.62046 * 301.25037 * 4 3 2 27 27 H 1.09002 * 109.58720 * 185.71834 * 5 4 3 28 28 H 1.08996 * 109.58651 * 65.43731 * 5 4 3 29 29 H 1.09001 * 109.47385 * 300.00399 * 9 7 6 30 30 H 1.08997 * 109.47457 * 60.00250 * 9 7 6 31 31 H 1.09001 * 109.46917 * 300.00128 * 10 9 7 32 32 H 1.08997 * 109.47262 * 59.99573 * 10 9 7 33 33 H 1.09004 * 109.46493 * 299.99956 * 11 10 9 34 34 H 1.08998 * 109.46599 * 59.99358 * 11 10 9 35 35 H 1.09001 * 109.47282 * 300.00086 * 12 11 10 36 36 H 1.08997 * 109.47062 * 59.99631 * 12 11 10 37 37 H 0.96996 * 120.00407 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.58787 * 66.18123 * 21 6 5 39 39 H 1.09007 * 109.58600 * 186.46436 * 21 6 5 40 40 H 1.09002 * 109.49876 * 58.67634 * 22 3 2 41 41 H 1.09005 * 109.52615 * 298.59883 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 -0.2850 -1.4148 5 6 4.6873 -0.3141 -1.4049 6 7 5.1832 0.9409 -0.8239 7 6 6.0763 1.7000 -1.4893 8 8 6.4778 1.3493 -2.5786 9 6 6.5750 2.9850 -0.8803 10 6 7.5713 3.6481 -1.8334 11 6 8.0782 4.9526 -1.2148 12 6 9.0750 5.6153 -2.1677 13 6 9.5737 6.9004 -1.5586 14 1 9.2159 7.2129 -0.5888 15 6 10.4869 7.6771 -2.2396 16 7 10.9232 7.2964 -3.4205 17 14 11.1057 9.2697 -1.4844 18 1 10.4662 9.4703 -0.1592 19 1 12.5795 9.1986 -1.3176 20 1 10.7627 10.4065 -2.3762 21 6 4.6867 1.3530 0.4961 22 6 3.1552 1.3670 0.4645 23 1 -1.0499 -0.0002 -0.0001 24 1 3.0095 -0.7719 0.6777 25 1 2.8110 0.4992 -2.0888 26 1 2.7756 -1.2491 -1.7530 27 1 5.0575 -0.4159 -2.4251 28 1 5.0329 -1.1561 -0.8051 29 1 5.7337 3.6568 -0.7096 30 1 7.0669 2.7706 0.0685 31 1 8.4126 2.9765 -2.0044 32 1 7.0791 3.8626 -2.7820 33 1 7.2370 5.6243 -1.0435 34 1 8.5705 4.7376 -0.2664 35 1 9.9161 4.9434 -2.3386 36 1 8.5831 5.8301 -3.1163 37 1 11.5659 7.8426 -3.8994 38 1 5.0302 0.6472 1.2524 39 1 5.0586 2.3503 0.7314 40 1 2.7727 1.5776 1.4633 41 1 2.8126 2.1376 -0.2261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843698502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:25 Heat of formation + Delta-G solvation = -15.075763 kcal Electronic energy + Delta-G solvation = -19048.336947 eV Core-core repulsion = 16121.435585 eV Total energy + Delta-G solvation = -2926.901362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.34140 -37.97424 -34.91574 -34.53664 -32.70036 -31.73135 -31.40099 -29.57805 -26.39960 -25.21646 -23.63438 -22.44029 -21.20302 -20.00351 -19.09080 -18.46356 -16.95434 -16.17073 -15.90269 -15.82158 -15.15141 -14.65517 -14.52075 -14.40102 -14.27029 -13.55240 -13.29964 -12.89549 -12.51494 -12.21565 -11.88756 -11.75070 -11.67196 -11.54474 -11.48131 -11.45193 -10.98198 -10.51784 -10.47572 -10.44111 -10.38756 -10.35337 -9.72694 -9.59128 -9.20023 -8.95110 -8.81914 -8.29180 -5.93747 -3.96152 2.47064 2.49457 2.70459 2.87266 3.34155 3.41284 3.45214 3.91496 4.33617 4.43079 4.50344 4.68985 4.69674 4.81151 4.92961 5.09942 5.16404 5.30240 5.32916 5.39260 5.41776 5.45001 5.48760 5.63673 5.68578 5.73798 5.88104 5.92732 6.16071 6.29608 6.38231 6.57819 6.86472 7.03930 7.21606 7.27993 7.31118 7.76326 7.92281 8.07970 8.22739 8.49737 9.11886 9.67450 11.17634 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039774 B = 0.002871 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.809328 B = 9751.426949 C =10156.301975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C 0.021 3.979 4 C -0.125 4.125 5 C 0.111 3.889 6 N -0.622 5.622 7 C 0.516 3.484 8 O -0.535 6.535 9 C -0.138 4.138 10 C -0.104 4.104 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.054 3.946 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.107 3.893 22 C -0.127 4.127 23 H 0.216 0.784 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.917 -16.591 9.747 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.003 3.997 4 C -0.163 4.163 5 C -0.012 4.012 6 N -0.358 5.358 7 C 0.305 3.695 8 O -0.410 6.410 9 C -0.178 4.178 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.018 4.018 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.016 4.016 22 C -0.165 4.165 23 H 0.233 0.767 24 H 0.111 0.889 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.553 -16.718 9.006 26.548 hybrid contribution 0.003 0.861 0.448 0.971 sum -18.550 -15.857 9.454 26.171 Atomic orbital electron populations 1.24918 0.95932 1.00863 1.00832 1.23031 0.94222 1.00389 1.00393 1.18321 0.84486 0.98720 0.98222 1.21955 0.95608 1.03061 0.95682 1.21538 0.92724 0.85885 1.01053 1.48226 1.44400 1.23402 1.19732 1.21118 0.77754 0.85562 0.85060 1.90692 1.57131 1.72422 1.20790 1.21825 1.01169 0.93552 1.01241 1.21465 0.97412 0.97518 0.97772 1.21646 0.99431 0.94057 0.99604 1.19103 0.93483 0.94885 0.94329 1.21321 1.24358 1.06157 1.03874 0.92710 1.25051 0.96575 0.98059 0.94958 1.69986 1.31880 1.38398 1.13219 0.86558 0.78583 0.83700 0.79275 1.19785 1.21060 1.21068 1.21760 0.93365 1.02046 0.84417 1.21962 0.95426 0.96467 1.02678 0.76682 0.88858 0.90969 0.90333 0.88543 0.91491 0.89175 0.89137 0.91803 0.91833 0.93509 0.93488 0.96581 0.96592 0.93111 0.91036 0.88676 0.90105 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.59 19.25 29.55 0.57 -1.02 16 2 C -0.18 -1.53 12.56 -37.12 -0.47 -2.00 16 3 C 0.02 0.15 2.52 -93.35 -0.24 -0.09 16 4 C -0.12 -0.99 5.33 -26.59 -0.14 -1.13 16 5 C 0.11 1.03 6.43 -3.71 -0.02 1.00 16 6 N -0.62 -6.58 2.97 -172.77 -0.51 -7.10 16 7 C 0.52 7.36 7.70 -10.98 -0.08 7.28 16 8 O -0.53 -9.85 15.39 5.56 0.09 -9.77 16 9 C -0.14 -1.86 4.05 -27.88 -0.11 -1.97 16 10 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 11 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 12 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 13 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 17 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 C 0.11 0.79 6.34 -3.71 -0.02 0.77 16 22 C -0.13 -0.88 5.32 -26.61 -0.14 -1.02 16 23 H 0.22 0.95 7.80 -54.09 -0.42 0.53 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 1.09 7.00 -51.93 -0.36 0.72 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 30 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.65 5.93 -51.92 -0.31 0.34 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -34.33 339.39 -8.01 -42.33 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.94 Total: -4.54 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.47 Total: -16.06 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.22 Total: -34.05 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.33 -8.01 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843698502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.256 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds