Wall clock time and date at job start Mon Mar 30 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47087 * 2 1 4 4 C 1.38168 * 120.02970 * 265.00222 * 3 2 1 5 5 C 1.38249 * 120.05162 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.11574 * 359.97438 * 5 4 3 7 7 C 1.38125 * 120.05444 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.02509 * 180.02562 * 7 6 5 9 9 N 1.46894 * 109.46916 * 254.26818 * 8 7 6 10 10 C 1.46900 * 110.99651 * 75.95335 * 9 8 7 11 11 C 1.52997 * 109.47403 * 68.35360 * 10 9 8 12 12 C 1.46898 * 111.00074 * 199.90561 * 9 8 7 13 13 C 1.50705 * 109.46988 * 170.00385 * 12 9 8 14 14 H 1.07999 * 120.00420 * 359.97438 * 13 12 9 15 15 C 1.37881 * 119.99705 * 180.02562 * 13 12 9 16 16 N 1.31512 * 119.99959 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99790 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47389 * 90.00157 * 17 15 13 19 19 H 1.48500 * 109.47323 * 210.00156 * 17 15 13 20 20 H 1.48500 * 109.47484 * 330.00210 * 17 15 13 21 21 C 1.38711 * 120.02570 * 85.25598 * 3 2 1 22 22 O 1.35899 * 120.05788 * 0.02562 * 21 3 2 23 23 H 1.08998 * 109.46993 * 59.99455 * 1 2 3 24 24 H 1.08996 * 109.46875 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46724 * 299.99924 * 1 2 3 26 26 H 1.09003 * 109.47041 * 240.00788 * 2 1 3 27 27 H 1.08998 * 109.47510 * 120.00444 * 2 1 3 28 28 H 1.07998 * 119.97426 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.94016 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.97401 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46765 * 134.27508 * 8 7 6 32 32 H 1.08995 * 109.47581 * 14.27413 * 8 7 6 33 33 H 1.09005 * 109.46981 * 188.34905 * 10 9 8 34 34 H 1.08999 * 109.47417 * 308.34782 * 10 9 8 35 35 H 1.08993 * 109.47482 * 63.93342 * 11 10 9 36 36 H 1.09003 * 109.47200 * 183.94005 * 11 10 9 37 37 H 1.09003 * 109.46900 * 303.93594 * 11 10 9 38 38 H 1.09000 * 109.47088 * 290.00317 * 12 9 8 39 39 H 1.08999 * 109.46966 * 50.00409 * 12 9 8 40 40 H 0.97002 * 119.99629 * 179.97438 * 16 15 13 41 41 H 0.96704 * 113.99964 * 270.25226 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0380 -1.1917 5 6 2.8225 3.3412 -1.1921 6 6 2.9557 4.0306 -0.0008 7 6 2.6284 3.4180 1.1932 8 6 2.7732 4.1700 2.4911 9 7 3.9489 3.6716 3.2172 10 6 5.1908 4.1825 2.6218 11 6 5.2892 5.6902 2.8624 12 6 3.8699 4.0123 4.6439 13 6 4.9540 3.2832 5.3952 14 1 5.6334 2.6316 4.8658 15 6 5.0779 3.4473 6.7586 16 7 4.2497 4.2396 7.4034 17 14 6.4211 2.5430 7.6898 18 1 7.6469 3.3806 7.7281 19 1 5.9646 2.2702 9.0764 20 1 6.7199 1.2594 7.0056 21 6 2.1701 2.1083 1.1968 22 8 1.8528 1.5016 2.3708 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.2575 1.5019 -2.1235 29 1 3.0785 3.8221 -2.1247 30 1 3.3159 5.0487 -0.0038 31 1 1.8807 4.0210 3.0989 32 1 2.8980 5.2327 2.2834 33 1 6.0452 3.6849 3.0807 34 1 5.1881 3.9849 1.5499 35 1 5.3625 5.8834 3.9325 36 1 6.1747 6.0811 2.3610 37 1 4.4005 6.1803 2.4647 38 1 4.0013 5.0871 4.7686 39 1 2.8960 3.7175 5.0345 40 1 4.3366 4.3547 8.3626 41 1 0.9298 1.6159 2.6357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848882186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:23 Heat of formation + Delta-G solvation = -24.508393 kcal Electronic energy + Delta-G solvation = -20276.211988 eV Core-core repulsion = 17348.901596 eV Total energy + Delta-G solvation = -2927.310392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90946 -37.09152 -36.23733 -34.06003 -32.51823 -30.89142 -29.19510 -28.80585 -26.96996 -24.62114 -23.80351 -23.08124 -21.57682 -20.50241 -19.08653 -17.89030 -16.17793 -15.99921 -15.61693 -14.99576 -14.68456 -14.59712 -14.13722 -13.93747 -13.66860 -13.28702 -12.83451 -12.67727 -12.34662 -12.16099 -11.79535 -11.65235 -11.49992 -11.41577 -11.20194 -11.04148 -10.84966 -10.78804 -10.59612 -10.49776 -10.03982 -9.90582 -9.66625 -9.12845 -8.46109 -8.36037 -8.22562 -7.04520 -5.96016 -3.95614 1.49906 1.54172 3.35931 3.42014 3.47657 3.82798 4.49425 4.56397 4.81416 4.94841 5.06929 5.20690 5.30198 5.36445 5.40776 5.49280 5.51403 5.70392 5.78806 5.87002 5.92992 5.94750 6.01623 6.08370 6.12136 6.23857 6.26854 6.34759 6.49928 6.63697 6.65424 6.77970 6.86830 7.00005 7.07011 7.40153 7.48174 7.89154 8.08990 8.18864 8.31887 8.65364 9.12128 9.67861 11.14861 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.005320 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.173861 B = 5261.649781 C = 5965.688061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.133 4.133 6 C -0.109 4.109 7 C -0.086 4.086 8 C 0.093 3.907 9 N -0.519 5.519 10 C 0.063 3.937 11 C -0.187 4.187 12 C 0.191 3.809 13 C -0.498 4.498 14 H 0.061 0.939 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.895 3.105 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.135 3.865 22 O -0.474 6.474 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.042 0.958 38 H -0.002 1.002 39 H 0.027 0.973 40 H 0.259 0.741 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.639 -2.586 -16.340 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.116 4.116 4 C -0.133 4.133 5 C -0.151 4.151 6 C -0.127 4.127 7 C -0.087 4.087 8 C -0.035 4.035 9 N -0.242 5.242 10 C -0.066 4.066 11 C -0.246 4.246 12 C 0.067 3.933 13 C -0.537 4.537 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.542 5.542 17 Si 0.723 3.277 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.198 1.198 21 C 0.089 3.911 22 O -0.282 6.282 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.015 0.985 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.087 -3.221 -16.165 17.571 hybrid contribution 0.280 0.678 0.689 1.007 sum -5.807 -2.543 -15.475 16.723 Atomic orbital electron populations 1.21694 0.95157 1.01454 1.01735 1.20407 0.95714 0.92712 1.02999 1.20194 1.01799 0.96962 0.92646 1.20803 1.00551 0.95084 0.96837 1.21004 1.01390 0.94919 0.97765 1.20950 1.00083 0.99935 0.91757 1.20413 0.98851 0.93817 0.95628 1.20886 0.96191 0.94855 0.91583 1.62292 0.99051 1.58061 1.04838 1.21942 0.94589 0.92370 0.97698 1.22383 0.99888 0.99080 1.03268 1.19792 0.97771 0.94807 0.80967 1.21148 1.14273 1.26252 0.91982 0.92059 1.24954 0.96393 0.95634 0.97636 1.69958 1.37438 1.38132 1.08638 0.86544 0.81892 0.80234 0.79032 1.20868 1.21351 1.19820 1.18097 0.98418 0.89883 0.84695 1.84968 1.31870 1.74823 1.36552 0.92910 0.92554 0.92809 0.91531 0.90229 0.86443 0.86447 0.86325 0.90954 0.94678 0.90510 0.93236 0.90946 0.93684 0.93900 0.98454 0.95520 0.93096 0.76658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.16 0.37 -0.99 16 2 C -0.08 -0.93 5.79 -27.88 -0.16 -1.09 16 3 C -0.12 -1.57 5.15 -104.47 -0.54 -2.11 16 4 C -0.11 -1.41 9.68 -39.60 -0.38 -1.80 16 5 C -0.13 -1.65 10.04 -39.56 -0.40 -2.04 16 6 C -0.11 -1.54 9.08 -39.60 -0.36 -1.90 16 7 C -0.09 -1.40 4.82 -104.47 -0.50 -1.91 16 8 C 0.09 1.72 4.63 -4.98 -0.02 1.69 16 9 N -0.52 -11.45 4.62 -237.52 -1.10 -12.55 16 10 C 0.06 1.27 5.72 -3.83 -0.02 1.25 16 11 C -0.19 -3.50 9.16 37.16 0.34 -3.16 16 12 C 0.19 5.00 4.37 -4.97 -0.02 4.98 16 13 C -0.50 -14.19 8.57 -34.44 -0.30 -14.49 16 14 H 0.06 1.77 7.10 -52.49 -0.37 1.39 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 17 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.13 2.14 6.65 -39.21 -0.26 1.88 16 22 O -0.47 -7.79 11.99 -19.42 -0.23 -8.03 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 27 H 0.08 1.01 7.68 -51.93 -0.40 0.62 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 30 H 0.12 1.53 8.00 -52.49 -0.42 1.11 16 31 H 0.07 1.34 7.62 -51.93 -0.40 0.95 16 32 H 0.04 0.62 5.82 -51.93 -0.30 0.32 16 33 H 0.08 1.69 6.99 -51.93 -0.36 1.33 16 34 H 0.05 0.92 6.99 -51.93 -0.36 0.56 16 35 H 0.07 1.57 6.44 -51.93 -0.33 1.23 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.74 6.25 -51.93 -0.32 0.42 16 38 H 0.00 -0.06 5.98 -51.93 -0.31 -0.37 16 39 H 0.03 0.75 7.83 -51.93 -0.41 0.35 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 41 H 0.38 4.55 9.06 45.56 0.41 4.97 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -31.60 330.57 -8.66 -40.26 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.67 Total: 2.70 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.36 Total: -18.22 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.36 Total: -38.77 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.23 Total: -8.03 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.60 -8.66 -40.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848882186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.749 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds