Wall clock time and date at job start Mon Mar 30 2020 00:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47336 * 2 1 4 4 C 1.38165 * 120.02630 * 264.99780 * 3 2 1 5 5 C 1.38245 * 120.05645 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.10982 * 359.97438 * 5 4 3 7 7 C 1.38126 * 120.05768 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.03077 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47423 * 260.00182 * 8 7 6 10 10 C 1.46898 * 111.00068 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47074 * 179.97438 * 10 9 8 12 12 C 1.53008 * 109.46958 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00278 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99810 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00105 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00115 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47227 * 59.99751 * 17 15 13 19 19 H 1.48499 * 109.47363 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46768 * 300.00050 * 17 15 13 21 21 C 1.38714 * 120.03037 * 84.97800 * 3 2 1 22 22 O 1.35901 * 120.05102 * 0.04686 * 21 3 2 23 23 H 1.08999 * 109.46473 * 300.00534 * 1 2 3 24 24 H 1.09001 * 109.46748 * 59.99957 * 1 2 3 25 25 H 1.08991 * 109.47378 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47174 * 239.99727 * 2 1 3 27 27 H 1.09001 * 109.46748 * 120.00042 * 2 1 3 28 28 H 1.07997 * 119.97398 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.94685 * 179.70646 * 5 4 3 30 30 H 1.08005 * 119.97140 * 179.97438 * 6 5 4 31 31 H 1.09009 * 109.46724 * 19.99987 * 8 7 6 32 32 H 1.09000 * 109.46807 * 139.99361 * 8 7 6 33 33 H 1.00902 * 110.99519 * 303.94921 * 9 8 7 34 34 H 1.09002 * 109.47044 * 299.99944 * 10 9 8 35 35 H 1.08997 * 109.47405 * 59.99598 * 10 9 8 36 36 H 1.08993 * 109.47493 * 299.99967 * 11 10 9 37 37 H 1.09002 * 109.47095 * 60.00150 * 11 10 9 38 38 H 1.08999 * 109.47353 * 299.99698 * 12 11 10 39 39 H 1.08996 * 109.47048 * 60.00687 * 12 11 10 40 40 H 0.96999 * 119.99645 * 179.97438 * 16 15 13 41 41 H 0.96697 * 114.00182 * 90.00072 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3612 2.0378 -1.1917 5 6 2.8227 3.3410 -1.1923 6 6 2.9558 4.0304 -0.0010 7 6 2.6285 3.4180 1.1931 8 6 2.7733 4.1700 2.4909 9 7 4.0223 3.7695 3.1523 10 6 4.1970 4.4836 4.4240 11 6 5.5052 4.0406 5.0821 12 6 5.6876 4.7849 6.4064 13 6 6.9765 4.3489 7.0543 14 1 7.6032 3.6148 6.5698 15 6 7.3557 4.8873 8.2656 16 7 6.5928 5.7817 8.8554 17 14 8.9537 4.3475 9.0684 18 1 10.0910 4.6588 8.1657 19 1 9.1300 5.0689 10.3544 20 1 8.9101 2.8852 9.3236 21 6 2.1647 2.1103 1.1963 22 8 1.8425 1.5053 2.3698 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2585 1.5014 -2.1234 29 1 3.0837 3.8200 -2.1244 30 1 3.3169 5.0483 -0.0041 31 1 2.7960 5.2411 2.2896 32 1 1.9284 3.9403 3.1401 33 1 4.0533 2.7706 3.2916 34 1 4.2295 5.5569 4.2366 35 1 3.3621 4.2556 5.0865 36 1 5.4724 2.9674 5.2696 37 1 6.3405 4.2683 4.4198 38 1 5.7207 5.8581 6.2185 39 1 4.8525 4.5575 7.0690 40 1 6.8595 6.1602 9.7078 41 1 2.5791 1.0374 2.7864 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848894929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:25 Heat of formation + Delta-G solvation = -48.563927 kcal Electronic energy + Delta-G solvation = -19002.493703 eV Core-core repulsion = 16074.140185 eV Total energy + Delta-G solvation = -2928.353518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29799 -36.75640 -36.52486 -34.47356 -33.36150 -31.70094 -30.02860 -29.14844 -26.70065 -24.59856 -24.13602 -22.29419 -21.74604 -20.80266 -19.96511 -18.37501 -16.45378 -16.29768 -15.99546 -15.56605 -15.13893 -14.61199 -14.32019 -14.00234 -13.97897 -13.93725 -13.38054 -13.04715 -12.48633 -12.32548 -12.09794 -11.93373 -11.90919 -11.66172 -11.45070 -11.31172 -11.09822 -10.80149 -10.57267 -10.54382 -10.37233 -9.68656 -9.36545 -9.07578 -8.82316 -8.66574 -8.32632 -8.15958 -5.97864 -4.00113 1.10675 1.17679 3.34864 3.38948 3.41506 3.43244 4.11196 4.42845 4.49324 4.54330 4.68453 4.82241 4.96548 5.14925 5.19382 5.26123 5.30245 5.37796 5.52195 5.55412 5.68694 5.73089 5.75397 5.84058 5.92950 5.93720 6.03631 6.29111 6.32265 6.33076 6.45830 6.67837 6.71886 6.75761 7.14221 7.30411 7.49126 7.60672 7.70021 7.85250 8.02514 8.45562 9.06929 9.63770 11.13588 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033790 B = 0.002995 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.455218 B = 9346.771694 C = 9623.477506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.109 4.109 4 C -0.109 4.109 5 C -0.127 4.127 6 C -0.092 4.092 7 C -0.096 4.096 8 C 0.097 3.903 9 N -0.683 5.683 10 C 0.058 3.942 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.111 3.889 22 O -0.494 6.494 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.332 0.668 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.261 0.739 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.424 -8.805 -20.303 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.110 4.110 4 C -0.127 4.127 5 C -0.145 4.145 6 C -0.111 4.111 7 C -0.097 4.097 8 C -0.031 4.031 9 N -0.313 5.313 10 C -0.070 4.070 11 C -0.144 4.144 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.065 3.935 22 O -0.304 6.304 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.149 0.851 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -11.614 -8.003 -20.586 24.954 hybrid contribution 0.703 -0.819 1.187 1.604 sum -10.911 -8.822 -19.399 23.941 Atomic orbital electron populations 1.21710 0.94628 1.01521 1.02278 1.20378 0.96351 0.92190 1.02506 1.20174 1.01164 0.96819 0.92816 1.20899 0.99718 0.95116 0.96999 1.21133 1.00442 0.94782 0.98127 1.20975 0.98551 1.00254 0.91333 1.20189 0.99021 0.94423 0.96023 1.20798 0.91854 0.99023 0.91466 1.60680 1.34344 1.10749 1.25529 1.22163 0.98605 0.98580 0.87674 1.21621 0.94483 0.99701 0.98622 1.19061 0.96719 0.95457 0.90286 1.21223 1.06109 1.23723 1.04755 0.92730 1.25030 0.97087 0.95119 0.97279 1.69959 1.37734 1.28815 1.17121 0.86653 0.84004 0.78718 0.78589 1.20218 1.21309 1.20268 1.18151 0.98963 0.91091 0.85245 1.84802 1.39394 1.71379 1.34795 0.92107 0.92894 0.92581 0.91337 0.91019 0.85990 0.85884 0.85538 0.90322 0.93834 0.85097 0.91351 0.95576 0.93712 0.92565 0.96569 0.96789 0.92973 0.75662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.90 37.16 0.37 -0.81 16 2 C -0.08 -0.65 5.79 -27.88 -0.16 -0.81 16 3 C -0.11 -1.12 5.15 -104.48 -0.54 -1.66 16 4 C -0.11 -1.03 9.68 -39.61 -0.38 -1.41 16 5 C -0.13 -1.22 10.04 -39.56 -0.40 -1.62 16 6 C -0.09 -1.02 9.66 -39.60 -0.38 -1.41 16 7 C -0.10 -1.17 5.41 -104.48 -0.56 -1.73 16 8 C 0.10 1.29 5.48 -4.98 -0.03 1.26 16 9 N -0.68 -10.12 6.49 -115.06 -0.75 -10.86 16 10 C 0.06 1.02 5.68 -3.83 -0.02 0.99 16 11 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 17 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.11 1.28 6.65 -39.22 -0.26 1.02 16 22 O -0.49 -5.40 11.83 -19.43 -0.23 -5.63 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 27 H 0.07 0.59 7.69 -51.93 -0.40 0.19 16 28 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.26 8.04 -52.48 -0.42 0.84 16 31 H 0.08 1.01 8.00 -51.92 -0.42 0.60 16 32 H 0.04 0.60 7.85 -51.93 -0.41 0.19 16 33 H 0.33 4.54 8.41 -39.29 -0.33 4.21 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.39 2.99 8.80 45.56 0.40 3.39 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -31.73 343.15 -9.34 -41.07 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.18 Total: 1.80 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -3.06 Total: -21.84 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.01 Total: -37.44 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.23 Total: -5.63 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.73 -9.34 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848894929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.499 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds