Wall clock time and date at job start Mon Mar 30 2020 00:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.47103 * 120.00502 * 2 1 4 4 O 1.21608 * 119.99857 * 81.71777 * 3 2 1 5 5 N 1.34776 * 119.99973 * 261.72455 * 3 2 1 6 6 C 1.46931 * 120.63065 * 5.57986 * 5 3 2 7 7 C 1.53192 * 108.77339 * 126.36813 * 6 5 3 8 8 C 1.53045 * 109.31128 * 54.63979 * 7 6 5 9 9 C 1.53043 * 109.53364 * 298.62974 * 8 7 6 10 10 H 1.08992 * 109.50041 * 301.41353 * 9 8 7 11 11 C 1.50702 * 109.49346 * 181.34847 * 9 8 7 12 12 H 1.07992 * 120.00200 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99786 * 180.02562 * 11 9 8 14 14 N 1.31519 * 120.00197 * 180.02562 * 13 11 9 15 15 Si 1.86805 * 120.00167 * 359.97438 * 13 11 9 16 16 H 1.48504 * 109.46621 * 89.99781 * 15 13 11 17 17 H 1.48491 * 109.47469 * 209.99997 * 15 13 11 18 18 H 1.48504 * 109.46823 * 330.00362 * 15 13 11 19 19 C 1.46918 * 120.62923 * 185.30099 * 5 3 2 20 20 C 1.32994 * 119.99729 * 179.97438 * 2 1 3 21 21 C 1.51402 * 136.31832 * 179.63166 * 20 2 1 22 22 C 1.53369 * 87.52141 * 206.05634 * 21 20 2 23 23 C 1.51404 * 136.31851 * 359.97438 * 20 2 1 24 24 H 1.09000 * 109.47270 * 85.08427 * 1 2 3 25 25 H 1.09003 * 109.47151 * 325.09068 * 1 2 3 26 26 H 1.08998 * 109.47876 * 205.08811 * 1 2 3 27 27 H 1.08993 * 109.58902 * 246.15896 * 6 5 3 28 28 H 1.09005 * 109.58394 * 6.44270 * 6 5 3 29 29 H 1.09000 * 109.49629 * 174.58258 * 7 6 5 30 30 H 1.08996 * 109.50312 * 294.68825 * 7 6 5 31 31 H 1.08993 * 109.46370 * 58.64935 * 8 7 6 32 32 H 1.09000 * 109.45768 * 178.61581 * 8 7 6 33 33 H 0.96996 * 119.99640 * 179.97438 * 14 13 11 34 34 H 1.08995 * 109.59247 * 353.42280 * 19 5 3 35 35 H 1.09004 * 109.58895 * 113.84413 * 19 5 3 36 36 H 1.09010 * 113.56095 * 320.64031 * 21 20 2 37 37 H 1.09002 * 113.56721 * 91.36566 * 21 20 2 38 38 H 1.09003 * 113.96909 * 220.29107 * 22 21 20 39 39 H 1.09004 * 113.60396 * 88.79068 * 22 21 20 40 40 H 1.09002 * 113.56233 * 268.63175 * 23 20 2 41 41 H 1.09002 * 113.56044 * 39.28854 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 2.4153 1.8763 1.0422 5 7 2.7251 1.7734 -1.1550 6 6 2.4212 1.1228 -2.4369 7 6 1.8283 2.1649 -3.3904 8 6 2.7864 3.3533 -3.5004 9 6 2.9589 4.0006 -2.1243 10 1 1.9878 4.3248 -1.7504 11 6 3.8763 5.1906 -2.2397 12 1 4.2944 5.4591 -3.1985 13 6 4.1818 5.9365 -1.1211 14 7 4.9820 6.9754 -1.2218 15 14 3.4580 5.4725 0.5373 16 1 4.3686 4.5232 1.2266 17 1 3.2965 6.6939 1.3662 18 1 2.1336 4.8312 0.3374 19 6 3.5598 2.9824 -1.1569 20 6 2.1719 -1.1518 0.0005 21 6 3.6249 -1.5773 -0.0060 22 6 3.1707 -2.8821 -0.6718 23 6 1.8137 -2.6228 0.0016 24 1 -0.3634 0.0881 -1.0239 25 1 -0.3633 0.8428 0.5881 26 1 -0.3635 -0.9306 0.4357 27 1 3.3363 0.7142 -2.8653 28 1 1.7019 0.3194 -2.2774 29 1 1.6877 1.7188 -4.3750 30 1 0.8679 2.5065 -3.0046 31 1 3.7543 3.0072 -3.8627 32 1 2.3784 4.0854 -4.1974 33 1 5.1966 7.5003 -0.4349 34 1 3.5899 3.4073 -0.1536 35 1 4.5699 2.7287 -1.4788 36 1 4.2566 -0.9606 -0.6455 37 1 4.0420 -1.7189 0.9910 38 1 3.6833 -3.7700 -0.3015 39 1 3.1397 -2.8291 -1.7601 40 1 1.7342 -3.0512 1.0008 41 1 0.9590 -2.8637 -0.6306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855253463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:52 Heat of formation + Delta-G solvation = -2.907410 kcal Electronic energy + Delta-G solvation = -20836.149894 eV Core-core repulsion = 17909.776192 eV Total energy + Delta-G solvation = -2926.373703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05241 -38.52545 -36.88897 -33.65048 -32.75821 -31.82575 -30.47548 -26.85833 -25.63348 -25.16955 -25.03249 -22.41401 -21.99761 -20.20125 -18.93530 -17.67229 -16.71911 -16.43301 -15.80110 -15.54059 -15.03658 -14.33532 -14.00891 -13.91182 -13.52798 -13.26717 -12.99093 -12.79561 -12.61278 -12.43757 -12.38070 -12.11348 -11.95492 -11.73871 -11.32035 -11.06726 -11.04878 -10.59425 -10.50150 -10.37201 -10.08626 -9.75644 -9.51569 -9.20142 -9.05668 -8.74418 -8.58580 -8.04398 -6.09453 -4.11013 1.77037 2.95108 3.39621 3.44143 3.52446 3.60945 4.29269 4.42510 4.44280 4.56878 4.90787 4.97334 5.18878 5.23243 5.25719 5.36725 5.44216 5.49678 5.52247 5.56397 5.62828 5.70896 5.78362 5.81421 5.91790 6.02327 6.08092 6.10649 6.16996 6.22602 6.41518 6.53899 6.66327 6.72230 6.77618 6.90181 7.16353 7.44950 7.73100 7.88826 8.46816 8.59110 8.93554 9.52424 11.02442 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.006463 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.833924 B = 4331.450998 C = 4720.095864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.128 4.128 3 C 0.553 3.447 4 O -0.543 6.543 5 N -0.601 5.601 6 C 0.113 3.887 7 C -0.136 4.136 8 C -0.100 4.100 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.516 4.516 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.879 3.121 16 H -0.274 1.274 17 H -0.295 1.295 18 H -0.262 1.262 19 C 0.101 3.899 20 C -0.129 4.129 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.097 4.097 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.265 0.735 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 -19.990 -1.518 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.131 4.131 3 C 0.340 3.660 4 O -0.421 6.421 5 N -0.333 5.333 6 C -0.010 4.010 7 C -0.175 4.175 8 C -0.138 4.138 9 C -0.015 4.015 10 H 0.048 0.952 11 C -0.554 4.554 12 H 0.096 0.904 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.709 3.291 16 H -0.201 1.201 17 H -0.223 1.223 18 H -0.187 1.187 19 C -0.019 4.019 20 C -0.130 4.130 21 C -0.145 4.145 22 C -0.172 4.172 23 C -0.134 4.134 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.087 -19.507 -0.881 20.773 hybrid contribution -0.221 -0.085 0.966 0.994 sum -7.308 -19.591 0.085 20.910 Atomic orbital electron populations 1.20590 0.89604 1.02997 1.02405 1.20497 0.96396 0.91401 1.04833 1.18424 0.78880 0.84780 0.83873 1.90796 1.58999 1.60535 1.31765 1.48436 1.50646 1.28526 1.05694 1.21640 1.00072 0.95166 0.84089 1.21991 0.99981 0.97277 0.98202 1.21439 0.97885 0.95422 0.99034 1.19407 0.97389 0.93366 0.91369 0.95195 1.20950 1.28495 1.09252 0.96701 0.90450 1.25036 0.94336 0.94574 0.98977 1.69893 1.35448 1.17873 1.30169 0.86995 0.81358 0.76752 0.84021 1.20078 1.22286 1.18697 1.22516 0.93316 0.83683 1.02382 1.22929 0.97526 0.93578 0.98949 1.22150 0.94041 0.96746 1.01582 1.22629 0.96735 0.97580 1.00285 1.22141 0.98111 0.91865 1.01290 0.91067 0.91138 0.91296 0.91815 0.90643 0.91643 0.92012 0.92526 0.92194 0.92522 0.90356 0.91563 0.90782 0.88868 0.90725 0.89723 0.88939 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.01 36.00 0.36 -0.82 16 2 C -0.13 -1.90 3.74 -102.85 -0.38 -2.29 16 3 C 0.55 10.95 7.00 -12.66 -0.09 10.86 16 4 O -0.54 -13.25 16.52 5.27 0.09 -13.16 16 5 N -0.60 -11.59 2.98 -174.43 -0.52 -12.11 16 6 C 0.11 1.67 6.32 -3.71 -0.02 1.65 16 7 C -0.14 -2.04 6.08 -26.61 -0.16 -2.21 16 8 C -0.10 -1.90 5.11 -26.69 -0.14 -2.04 16 9 C 0.00 0.10 1.83 -91.87 -0.17 -0.07 16 10 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 11 C -0.52 -14.47 9.15 -34.44 -0.32 -14.79 16 12 H 0.08 2.30 7.99 -52.49 -0.42 1.89 16 13 C 0.07 2.16 5.45 -17.82 -0.10 2.07 16 14 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 15 Si 0.88 23.82 24.32 -169.99 -4.13 19.69 16 16 H -0.27 -7.52 6.92 56.52 0.39 -7.13 16 17 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 18 H -0.26 -7.16 6.53 56.52 0.37 -6.79 16 19 C 0.10 2.34 5.10 -3.94 -0.02 2.32 16 20 C -0.13 -1.61 6.57 -100.49 -0.66 -2.27 16 21 C -0.11 -1.25 7.83 -27.57 -0.22 -1.46 16 22 C -0.13 -1.15 8.17 -26.19 -0.21 -1.36 16 23 C -0.10 -0.86 7.63 -27.40 -0.21 -1.07 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.66 7.78 -51.93 -0.40 0.26 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.94 6.33 -51.93 -0.33 0.61 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.08 2.04 2.31 -51.93 -0.12 1.92 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -33.60 322.21 -8.01 -41.62 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.74 Total: -2.45 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.33 Total: -11.47 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.25 Total: -39.08 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.13 Total: 19.69 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.60 -8.01 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.709 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds