Wall clock time and date at job start Mon Mar 30 2020 00:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.47107 * 119.99754 * 2 1 4 4 O 1.21608 * 120.00492 * 130.41163 * 3 2 1 5 5 N 1.34778 * 119.99662 * 310.40772 * 3 2 1 6 6 C 1.46925 * 120.63483 * 7.12902 * 5 3 2 7 7 C 1.53191 * 108.77679 * 233.63045 * 6 5 3 8 8 C 1.53034 * 109.31382 * 305.36074 * 7 6 5 9 9 C 1.53046 * 109.53894 * 61.36384 * 8 7 6 10 10 H 1.09003 * 109.49413 * 58.58525 * 9 8 7 11 11 C 1.50692 * 109.49849 * 178.68592 * 9 8 7 12 12 H 1.07997 * 120.00257 * 32.03110 * 11 9 8 13 13 C 1.37877 * 119.99892 * 212.03504 * 11 9 8 14 14 N 1.31513 * 119.99871 * 184.57841 * 13 11 9 15 15 Si 1.86798 * 120.00012 * 4.57376 * 13 11 9 16 16 H 1.48498 * 109.46976 * 84.48893 * 15 13 11 17 17 H 1.48504 * 109.47010 * 204.49037 * 15 13 11 18 18 H 1.48503 * 109.47123 * 324.48879 * 15 13 11 19 19 C 1.46931 * 120.63269 * 187.14838 * 5 3 2 20 20 C 1.32987 * 120.00662 * 179.97438 * 2 1 3 21 21 C 1.51408 * 136.32027 * 179.62874 * 20 2 1 22 22 C 1.53381 * 87.52010 * 206.05962 * 21 20 2 23 23 C 1.51404 * 136.31460 * 0.02562 * 20 2 1 24 24 H 1.09008 * 109.46933 * 116.00854 * 1 2 3 25 25 H 1.08999 * 109.46848 * 235.99860 * 1 2 3 26 26 H 1.08992 * 109.47409 * 356.00266 * 1 2 3 27 27 H 1.09009 * 109.58342 * 353.41629 * 6 5 3 28 28 H 1.09001 * 109.59045 * 113.69331 * 6 5 3 29 29 H 1.09000 * 109.49746 * 185.40933 * 7 6 5 30 30 H 1.09001 * 109.49855 * 65.31719 * 7 6 5 31 31 H 1.09001 * 109.45833 * 301.34570 * 8 7 6 32 32 H 1.09001 * 109.46389 * 181.38698 * 8 7 6 33 33 H 0.97000 * 119.99972 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.58412 * 6.58024 * 19 5 3 35 35 H 1.08994 * 109.58499 * 246.16102 * 19 5 3 36 36 H 1.09005 * 113.55964 * 320.64386 * 21 20 2 37 37 H 1.08994 * 113.56174 * 91.37316 * 21 20 2 38 38 H 1.08996 * 113.96862 * 220.29069 * 22 21 20 39 39 H 1.09003 * 113.59549 * 88.79590 * 22 21 20 40 40 H 1.09000 * 113.55974 * 268.62585 * 23 20 2 41 41 H 1.08998 * 113.56335 * 39.35887 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.1377 1.4594 0.8018 5 7 1.9240 2.2359 -0.8888 6 6 0.7485 2.0923 -1.7584 7 6 1.1861 2.2808 -3.2143 8 6 1.9120 3.6207 -3.3551 9 6 3.1614 3.6213 -2.4712 10 1 3.8145 2.7991 -2.7640 11 6 3.8929 4.9285 -2.6352 12 1 3.3410 5.8345 -2.8377 13 6 5.2668 4.9680 -2.5268 14 7 5.8978 6.1207 -2.5800 15 14 6.2321 3.3843 -2.3042 16 1 6.4860 2.7687 -3.6315 17 1 7.5268 3.6828 -1.6410 18 1 5.4506 2.4424 -1.4630 19 6 2.7462 3.4479 -1.0069 20 6 2.1720 -1.1516 0.0005 21 6 3.6251 -1.5769 -0.0061 22 6 3.1710 -2.8819 -0.6719 23 6 1.8140 -2.6227 0.0007 24 1 -0.3633 -0.4507 -0.9237 25 1 -0.3633 -0.5747 0.8520 26 1 -0.3634 1.0251 0.0716 27 1 0.3194 1.0982 -1.6316 28 1 0.0062 2.8466 -1.4970 29 1 0.3093 2.2723 -3.8617 30 1 1.8577 1.4713 -3.5001 31 1 1.2479 4.4277 -3.0457 32 1 2.2029 3.7686 -4.3952 33 1 6.8643 6.1485 -2.5033 34 1 3.6353 3.3484 -0.3843 35 1 2.1679 4.3143 -0.6860 36 1 4.2567 -0.9602 -0.6455 37 1 4.0421 -1.7186 0.9909 38 1 3.6837 -3.7697 -0.3017 39 1 3.1401 -2.8287 -1.7602 40 1 1.7338 -3.0515 0.9996 41 1 0.9606 -2.8636 -0.6332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855253464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:54 Heat of formation + Delta-G solvation = -3.018702 kcal Electronic energy + Delta-G solvation = -20723.620287 eV Core-core repulsion = 17797.241758 eV Total energy + Delta-G solvation = -2926.378529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.01681 -38.48852 -36.75485 -33.93201 -32.66421 -31.69842 -30.33855 -26.85513 -25.71551 -25.13038 -24.96011 -22.32532 -21.79702 -20.20652 -18.86471 -17.60397 -16.80564 -16.12033 -15.80162 -15.59686 -14.87757 -14.35448 -14.02093 -13.81902 -13.72363 -13.13365 -13.00911 -12.52589 -12.48302 -12.45492 -12.34424 -12.22594 -11.92113 -11.65267 -11.14178 -11.00125 -10.93981 -10.67178 -10.51033 -10.42987 -10.02886 -9.71724 -9.55628 -9.26871 -9.02348 -8.76771 -8.56982 -7.97679 -6.10941 -4.11593 1.66521 3.21204 3.31683 3.40802 3.49098 3.59113 4.34789 4.43243 4.46693 4.65977 4.92768 5.00094 5.13804 5.21899 5.33846 5.38821 5.44538 5.49394 5.56507 5.57752 5.66953 5.73821 5.79977 5.90202 5.95657 6.04417 6.15726 6.17217 6.20603 6.34259 6.46447 6.63800 6.69768 6.76692 6.83777 6.99009 7.27417 7.38057 7.73872 7.97488 8.47935 8.65936 8.94324 9.52626 11.01593 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.006849 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.075120 B = 4087.118291 C = 4782.881980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.147 4.147 3 C 0.552 3.448 4 O -0.544 6.544 5 N -0.603 5.603 6 C 0.097 3.903 7 C -0.138 4.138 8 C -0.104 4.104 9 C 0.007 3.993 10 H 0.032 0.968 11 C -0.514 4.514 12 H 0.075 0.925 13 C 0.076 3.924 14 N -0.896 5.896 15 Si 0.871 3.129 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.259 1.259 19 C 0.114 3.886 20 C -0.102 4.102 21 C -0.105 4.105 22 C -0.139 4.139 23 C -0.098 4.098 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.265 0.735 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 -16.715 2.234 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.150 4.150 3 C 0.340 3.660 4 O -0.422 6.422 5 N -0.335 5.335 6 C -0.026 4.026 7 C -0.176 4.176 8 C -0.142 4.142 9 C -0.013 4.013 10 H 0.050 0.950 11 C -0.552 4.552 12 H 0.094 0.906 13 C -0.127 4.127 14 N -0.533 5.533 15 Si 0.698 3.302 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.184 1.184 19 C -0.007 4.007 20 C -0.104 4.104 21 C -0.142 4.142 22 C -0.177 4.177 23 C -0.135 4.135 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.195 -16.487 2.663 20.106 hybrid contribution 0.653 -0.616 0.013 0.898 sum -10.542 -17.103 2.675 20.269 Atomic orbital electron populations 1.20818 0.90390 1.02963 1.02002 1.20500 0.95948 0.91774 1.06818 1.18336 0.83185 0.83508 0.81004 1.90768 1.32093 1.80667 1.38699 1.48425 1.28232 1.20552 1.36322 1.22063 0.87703 1.02187 0.90643 1.22009 1.00271 1.00075 0.95223 1.21557 0.97554 0.94363 1.00723 1.19448 0.93830 0.97863 0.90144 0.95000 1.20898 0.91575 0.93372 1.49352 0.90641 1.25057 0.97805 0.95861 0.93953 1.69897 1.08983 1.24626 1.49750 0.86944 0.79708 0.84761 0.78802 1.20295 1.21453 1.18373 1.22447 0.94175 0.83217 1.00887 1.22953 0.97714 0.93573 0.96130 1.22129 0.94140 0.96202 1.01710 1.22685 0.96778 0.97885 1.00325 1.22168 0.98149 0.91839 1.01364 0.90957 0.91427 0.91113 0.89425 0.91744 0.91822 0.92265 0.92729 0.92249 0.92533 0.90125 0.92109 0.90830 0.88522 0.90643 0.89839 0.88646 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 8.05 36.00 0.29 -0.83 16 2 C -0.15 -2.19 5.18 -102.85 -0.53 -2.72 16 3 C 0.55 10.77 7.07 -12.66 -0.09 10.68 16 4 O -0.54 -12.82 16.34 5.27 0.09 -12.73 16 5 N -0.60 -11.46 2.97 -174.16 -0.52 -11.98 16 6 C 0.10 1.41 5.24 -3.71 -0.02 1.39 16 7 C -0.14 -2.09 6.08 -26.61 -0.16 -2.25 16 8 C -0.10 -1.99 5.15 -26.69 -0.14 -2.13 16 9 C 0.01 0.16 1.84 -91.65 -0.17 -0.01 16 10 H 0.03 0.79 5.49 -51.93 -0.29 0.50 16 11 C -0.51 -14.24 8.86 -34.44 -0.31 -14.55 16 12 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 13 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 14 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 15 Si 0.87 22.43 26.65 -169.99 -4.53 17.90 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 18 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 19 C 0.11 2.55 5.65 -3.71 -0.02 2.53 16 20 C -0.10 -1.39 6.60 -100.48 -0.66 -2.06 16 21 C -0.10 -1.43 7.72 -27.56 -0.21 -1.64 16 22 C -0.14 -1.39 8.17 -26.20 -0.21 -1.61 16 23 C -0.10 -0.95 7.86 -27.41 -0.22 -1.16 16 24 H 0.07 0.62 7.54 -51.92 -0.39 0.23 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.75 6.62 -51.93 -0.34 0.41 16 27 H 0.09 1.05 3.86 -51.92 -0.20 0.85 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.08 2.06 6.40 -51.93 -0.33 1.72 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 321.75 15.07 4.85 4.85 Total: -1.00 -32.96 321.75 -8.53 -41.49 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.64 Total: -0.64 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.55 Total: -12.24 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.26 Total: -38.64 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.53 Total: 17.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.96 -8.53 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.473 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds