Wall clock time and date at job start Mon Mar 30 2020 00:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.47107 * 119.99754 * 2 1 4 4 O 1.21608 * 120.00492 * 130.41163 * 3 2 1 5 5 N 1.34778 * 119.99662 * 310.40772 * 3 2 1 6 6 C 1.46925 * 120.63483 * 7.12902 * 5 3 2 7 7 C 1.53191 * 108.77679 * 233.63045 * 6 5 3 8 8 C 1.53034 * 109.31382 * 305.36074 * 7 6 5 9 9 C 1.53046 * 109.53894 * 61.36384 * 8 7 6 10 10 H 1.09003 * 109.49413 * 58.58525 * 9 8 7 11 11 C 1.50692 * 109.49849 * 178.68592 * 9 8 7 12 12 H 1.07997 * 120.00257 * 32.03110 * 11 9 8 13 13 C 1.37877 * 119.99892 * 212.03504 * 11 9 8 14 14 N 1.31513 * 119.99871 * 184.57841 * 13 11 9 15 15 Si 1.86798 * 120.00012 * 4.57376 * 13 11 9 16 16 H 1.48498 * 109.46976 * 84.48893 * 15 13 11 17 17 H 1.48504 * 109.47010 * 204.49037 * 15 13 11 18 18 H 1.48503 * 109.47123 * 324.48879 * 15 13 11 19 19 C 1.46931 * 120.63269 * 187.14838 * 5 3 2 20 20 C 1.32987 * 120.00662 * 179.97438 * 2 1 3 21 21 C 1.51408 * 136.32027 * 179.62874 * 20 2 1 22 22 C 1.53381 * 87.52010 * 206.05962 * 21 20 2 23 23 C 1.51404 * 136.31460 * 0.02562 * 20 2 1 24 24 H 1.09008 * 109.46933 * 116.00854 * 1 2 3 25 25 H 1.08999 * 109.46848 * 235.99860 * 1 2 3 26 26 H 1.08992 * 109.47409 * 356.00266 * 1 2 3 27 27 H 1.09009 * 109.58342 * 353.41629 * 6 5 3 28 28 H 1.09001 * 109.59045 * 113.69331 * 6 5 3 29 29 H 1.09000 * 109.49746 * 185.40933 * 7 6 5 30 30 H 1.09001 * 109.49855 * 65.31719 * 7 6 5 31 31 H 1.09001 * 109.45833 * 301.34570 * 8 7 6 32 32 H 1.09001 * 109.46389 * 181.38698 * 8 7 6 33 33 H 0.97000 * 119.99972 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.58412 * 6.58024 * 19 5 3 35 35 H 1.08994 * 109.58499 * 246.16102 * 19 5 3 36 36 H 1.09005 * 113.55964 * 320.64386 * 21 20 2 37 37 H 1.08994 * 113.56174 * 91.37316 * 21 20 2 38 38 H 1.08996 * 113.96862 * 220.29069 * 22 21 20 39 39 H 1.09003 * 113.59549 * 88.79590 * 22 21 20 40 40 H 1.09000 * 113.55974 * 268.62585 * 23 20 2 41 41 H 1.08998 * 113.56335 * 39.35887 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.1377 1.4594 0.8018 5 7 1.9240 2.2359 -0.8888 6 6 0.7485 2.0923 -1.7584 7 6 1.1861 2.2808 -3.2143 8 6 1.9120 3.6207 -3.3551 9 6 3.1614 3.6213 -2.4712 10 1 3.8145 2.7991 -2.7640 11 6 3.8929 4.9285 -2.6352 12 1 3.3410 5.8345 -2.8377 13 6 5.2668 4.9680 -2.5268 14 7 5.8978 6.1207 -2.5800 15 14 6.2321 3.3843 -2.3042 16 1 6.4860 2.7687 -3.6315 17 1 7.5268 3.6828 -1.6410 18 1 5.4506 2.4424 -1.4630 19 6 2.7462 3.4479 -1.0069 20 6 2.1720 -1.1516 0.0005 21 6 3.6251 -1.5769 -0.0061 22 6 3.1710 -2.8819 -0.6719 23 6 1.8140 -2.6227 0.0007 24 1 -0.3633 -0.4507 -0.9237 25 1 -0.3633 -0.5747 0.8520 26 1 -0.3634 1.0251 0.0716 27 1 0.3194 1.0982 -1.6316 28 1 0.0062 2.8466 -1.4970 29 1 0.3093 2.2723 -3.8617 30 1 1.8577 1.4713 -3.5001 31 1 1.2479 4.4277 -3.0457 32 1 2.2029 3.7686 -4.3952 33 1 6.8643 6.1485 -2.5033 34 1 3.6353 3.3484 -0.3843 35 1 2.1679 4.3143 -0.6860 36 1 4.2567 -0.9602 -0.6455 37 1 4.0421 -1.7186 0.9909 38 1 3.6837 -3.7697 -0.3017 39 1 3.1401 -2.8287 -1.7602 40 1 1.7338 -3.0515 0.9996 41 1 0.9606 -2.8636 -0.6332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855253464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:54 Heat of formation + Delta-G solvation = -23.666285 kcal Electronic energy + Delta-G solvation = -20724.515633 eV Core-core repulsion = 17797.241758 eV Total energy + Delta-G solvation = -2927.273875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40411 -39.56333 -38.32627 -35.54379 -34.30395 -33.21173 -32.02147 -27.82318 -27.25044 -26.44639 -26.32576 -23.49102 -23.34675 -21.57979 -20.41690 -19.19760 -18.60160 -17.54053 -17.00924 -16.69366 -16.37684 -16.01944 -15.50904 -15.25830 -15.06105 -14.71151 -14.53639 -13.95392 -13.84466 -13.79160 -13.40985 -13.34775 -13.08873 -12.95783 -12.71344 -12.53712 -12.49071 -12.06099 -11.87762 -11.73518 -11.65412 -11.43495 -11.19507 -11.14391 -10.78397 -10.59713 -9.84007 -9.51685 -8.39919 -6.41671 0.55097 1.18543 1.25808 1.36341 1.79626 2.18340 2.23458 2.98349 3.30751 3.55739 3.76771 3.89599 3.99036 4.12723 4.17624 4.20564 4.42575 4.45090 4.55011 4.63905 4.70696 4.72038 4.75935 4.78247 4.81735 4.92078 4.96823 4.97502 5.03085 5.04681 5.11353 5.22141 5.31703 5.34941 5.40969 5.54875 5.59784 5.70253 5.78745 6.24262 6.52795 6.66919 7.16137 7.24846 8.76483 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.006849 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.075120 B = 4087.118291 C = 4782.881980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.165 4.165 3 C 0.540 3.460 4 O -0.601 6.601 5 N -0.606 5.606 6 C 0.091 3.909 7 C -0.129 4.129 8 C -0.102 4.102 9 C 0.006 3.994 10 H 0.018 0.982 11 C -0.510 4.510 12 H 0.046 0.954 13 C 0.025 3.975 14 N -0.939 5.939 15 Si 0.929 3.071 16 H -0.260 1.260 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.124 3.876 20 C -0.108 4.108 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.077 4.077 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.267 0.733 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.927 -20.329 1.545 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.168 4.168 3 C 0.331 3.669 4 O -0.484 6.484 5 N -0.337 5.337 6 C -0.030 4.030 7 C -0.167 4.167 8 C -0.140 4.140 9 C -0.013 4.013 10 H 0.036 0.964 11 C -0.549 4.549 12 H 0.065 0.935 13 C -0.173 4.173 14 N -0.579 5.579 15 Si 0.755 3.245 16 H -0.184 1.184 17 H -0.214 1.214 18 H -0.199 1.199 19 C 0.001 3.999 20 C -0.109 4.109 21 C -0.166 4.166 22 C -0.163 4.163 23 C -0.114 4.114 24 H 0.121 0.879 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.142 0.858 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.304 -20.118 1.937 24.761 hybrid contribution 1.628 0.571 0.257 1.744 sum -12.676 -19.547 2.193 23.401 Atomic orbital electron populations 1.20889 0.86745 1.03651 1.04380 1.20531 0.98088 0.89231 1.08983 1.19303 0.82691 0.84988 0.79926 1.90727 1.34805 1.81861 1.40986 1.48466 1.28942 1.19174 1.37081 1.22483 0.86195 1.05085 0.89225 1.21972 1.01364 0.96818 0.96511 1.21472 0.95839 0.97454 0.99208 1.19408 0.95457 0.94754 0.91702 0.96362 1.21217 0.91661 0.94399 1.47617 0.93526 1.25735 0.99024 0.98245 0.94345 1.70007 1.09352 1.26417 1.52081 0.86020 0.78127 0.81256 0.79077 1.18441 1.21355 1.19869 1.21891 0.93499 0.85230 0.99261 1.23476 0.97729 0.95676 0.94063 1.22343 0.94260 0.98466 1.01502 1.22679 0.97014 0.96296 1.00351 1.22190 0.98602 0.87738 1.02839 0.87927 0.89568 0.91239 0.85816 0.89751 0.87320 0.92810 0.92319 0.92621 0.92409 0.94267 0.92246 0.94629 0.88733 0.88480 0.89547 0.86712 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 8.05 71.23 0.57 -1.10 16 2 C -0.17 -4.55 5.18 -18.70 -0.10 -4.65 16 3 C 0.54 21.21 7.07 86.57 0.61 21.82 16 4 O -0.60 -29.78 16.34 -4.06 -0.07 -29.85 16 5 N -0.61 -22.76 2.97 -823.16 -2.45 -25.21 16 6 C 0.09 2.34 5.24 86.36 0.45 2.79 16 7 C -0.13 -3.46 6.08 30.67 0.19 -3.27 16 8 C -0.10 -3.77 5.15 30.62 0.16 -3.62 16 9 C 0.01 0.31 1.84 -11.46 -0.02 0.29 16 10 H 0.02 0.91 5.49 -2.39 -0.01 0.90 16 11 C -0.51 -29.41 8.86 25.60 0.23 -29.18 16 12 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 13 C 0.03 1.50 5.47 84.65 0.46 1.97 16 14 N -0.94 -59.75 13.96 21.45 0.30 -59.46 16 15 Si 0.93 48.48 26.65 68.60 1.83 50.31 16 16 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 18 H -0.27 -14.79 6.54 99.48 0.65 -14.14 16 19 C 0.12 5.77 5.65 86.36 0.49 6.26 16 20 C -0.11 -2.69 6.60 -17.17 -0.11 -2.80 16 21 C -0.13 -3.44 7.72 30.06 0.23 -3.21 16 22 C -0.13 -2.12 8.17 30.94 0.25 -1.87 16 23 C -0.08 -1.12 7.86 30.15 0.24 -0.89 16 24 H 0.10 1.10 7.54 -2.38 -0.02 1.09 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.18 6.62 -2.39 -0.02 1.17 16 27 H 0.12 2.36 3.86 -2.38 -0.01 2.35 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.11 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 34 H 0.04 2.12 6.40 -2.39 -0.02 2.11 16 35 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.03 1.18 8.14 -2.38 -0.02 1.17 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -78.42 321.75 4.21 -74.21 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.95 Total: 7.44 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 3.65 Total: -17.45 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.15 Total: -84.66 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.07 Total: -29.85 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 1.83 Total: 50.31 kcal Total: -78.42 4.21 -74.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.544 kcal (2) G-P(sol) polarization free energy of solvation -78.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds