Wall clock time and date at job start Mon Mar 30 2020 00:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47240 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00040 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99614 * 179.97438 * 12 11 10 15 15 C 1.48039 * 125.65324 * 359.69699 * 14 12 11 16 16 C 1.53691 * 103.48148 * 156.61760 * 15 14 12 17 17 H 1.09002 * 108.26606 * 285.75726 * 16 15 14 18 18 C 1.50030 * 114.88623 * 164.05675 * 16 15 14 19 19 C 1.49618 * 113.23866 * 281.56113 * 18 16 15 20 20 C 1.29198 * 123.39077 * 347.38640 * 19 18 16 21 21 C 1.49089 * 124.67818 * 1.95149 * 20 19 18 22 22 C 1.53169 * 112.90066 * 342.21423 * 21 20 19 23 23 H 1.09003 * 112.88262 * 273.78771 * 22 21 20 24 24 C 1.47285 * 125.64416 * 179.97438 * 14 12 11 25 25 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 27 27 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 28 28 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 29 29 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 30 30 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 31 31 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 32 32 H 1.08999 * 110.59689 * 275.22967 * 15 14 12 33 33 H 1.08996 * 110.59923 * 38.17322 * 15 14 12 34 34 H 1.09003 * 108.74685 * 160.57970 * 18 16 15 35 35 H 1.09005 * 108.71716 * 42.51621 * 18 16 15 36 36 H 1.07998 * 118.30732 * 167.41471 * 19 18 16 37 37 H 1.07997 * 117.65753 * 181.92476 * 20 19 18 38 38 H 1.09004 * 108.79591 * 221.32766 * 21 20 19 39 39 H 1.08999 * 108.79577 * 103.09615 * 21 20 19 40 40 H 1.09003 * 110.01173 * 296.83186 * 24 14 12 41 41 H 1.08995 * 110.01118 * 58.20510 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 6 6.0536 -4.0577 -0.0015 13 8 5.2654 -4.9795 -0.0023 14 7 7.3787 -4.3039 -0.0020 15 6 8.4468 -3.2790 -0.0086 16 6 9.6560 -4.0177 0.5866 17 1 9.4967 -4.1247 1.6596 18 6 10.9791 -3.3475 0.3609 19 6 11.5230 -3.5634 -1.0160 20 6 11.0465 -4.4372 -1.8398 21 6 9.8756 -5.3167 -1.5600 22 6 9.5438 -5.4105 -0.0676 23 1 10.1153 -6.1838 0.4458 24 6 8.0038 -5.6375 -0.0020 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6801 -0.8911 27 1 3.8751 -0.6805 0.8889 28 1 3.6583 -3.1503 0.8892 29 1 3.6577 -3.1507 -0.8908 30 1 5.9147 -2.1230 -0.8909 31 1 5.9147 -2.1229 0.8890 32 1 8.6578 -2.9514 -1.0266 33 1 8.1691 -2.4316 0.6182 34 1 11.6960 -3.7345 1.0851 35 1 10.8615 -2.2765 0.5267 36 1 12.3574 -2.9579 -1.3379 37 1 11.5307 -4.5373 -2.8000 38 1 10.0902 -6.3172 -1.9357 39 1 9.0072 -4.9242 -2.0889 40 1 7.7440 -6.1713 0.9122 41 1 7.6732 -6.2045 -0.8722 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871525395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:57 Heat of formation + Delta-G solvation = -57.475152 kcal Electronic energy + Delta-G solvation = -19704.141948 eV Core-core repulsion = 16775.402011 eV Total energy + Delta-G solvation = -2928.739938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67683 -39.81815 -36.31920 -36.09295 -34.17104 -32.70879 -32.15340 -30.15540 -28.34247 -26.51832 -24.98596 -23.26233 -22.15899 -21.72636 -20.26902 -18.86584 -18.42024 -17.74051 -17.40463 -16.85580 -16.39654 -15.95309 -15.84599 -15.17669 -14.85230 -14.73559 -14.54186 -14.28362 -13.87573 -13.62396 -13.57254 -13.34065 -13.06383 -12.77663 -12.70150 -12.64071 -12.49392 -11.87690 -11.77946 -11.68193 -11.52127 -11.34236 -11.28758 -10.99549 -10.82694 -10.75317 -9.82385 -9.65793 -8.27976 -6.33883 1.38416 1.42197 1.49774 1.54367 1.59760 1.95153 2.39219 3.06995 3.30633 3.51924 3.67972 3.79326 4.10058 4.13799 4.18294 4.31049 4.36184 4.39286 4.44965 4.56431 4.60525 4.69861 4.76012 4.77249 4.87692 4.91903 4.96739 4.99334 5.02056 5.12606 5.18158 5.23423 5.36400 5.41712 5.53109 5.57924 5.67093 5.86028 6.15016 6.29876 6.44730 6.74586 7.14049 7.30471 8.89832 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031072 B = 0.003759 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.925010 B = 7446.614210 C = 8024.898975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.018 0.982 9 C -0.008 4.008 10 C -0.080 4.080 11 C -0.124 4.124 12 C 0.523 3.477 13 O -0.591 6.591 14 N -0.621 5.621 15 C 0.100 3.900 16 C -0.091 4.091 17 H 0.084 0.916 18 C -0.076 4.076 19 C -0.152 4.152 20 C -0.166 4.166 21 C -0.088 4.088 22 C -0.080 4.080 23 H 0.121 0.879 24 C 0.100 3.900 25 H 0.267 0.733 26 H 0.029 0.971 27 H 0.032 0.968 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.733 -5.697 -0.242 32.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.037 0.963 9 C -0.045 4.045 10 C -0.119 4.119 11 C -0.163 4.163 12 C 0.313 3.687 13 O -0.471 6.471 14 N -0.355 5.355 15 C -0.021 4.021 16 C -0.110 4.110 17 H 0.103 0.897 18 C -0.113 4.113 19 C -0.170 4.170 20 C -0.184 4.184 21 C -0.125 4.125 22 C -0.098 4.098 23 H 0.139 0.861 24 C -0.022 4.022 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 31.087 -6.075 -0.244 31.676 hybrid contribution -0.864 0.206 -0.247 0.922 sum 30.223 -5.869 -0.490 30.792 Atomic orbital electron populations 1.70111 1.08712 1.28324 1.52640 1.26211 0.95762 1.04163 0.93786 0.85485 0.79681 0.76969 0.79433 1.18866 1.21083 1.15819 1.21551 0.92661 0.92874 1.50836 0.96313 1.19533 0.93520 0.94083 0.97346 1.21052 0.93231 0.97337 1.00231 1.21683 0.96341 0.92253 1.06058 1.20918 0.80738 0.92192 0.74813 1.90679 1.55994 1.48287 1.52181 1.48775 1.04716 1.09159 1.72854 1.22532 0.85865 0.91464 1.02253 1.21308 0.94387 0.94421 1.00904 0.89747 1.19587 0.94325 1.01845 0.95511 1.22054 1.00627 0.98468 0.95873 1.21763 0.98107 0.98235 1.00293 1.20347 0.96843 1.00147 0.95121 1.22438 0.92264 0.98383 0.96723 0.86118 1.22520 0.93865 0.84610 1.01239 0.92462 0.95272 0.95000 0.94507 0.94650 0.86956 0.86669 0.90533 0.88734 0.88925 0.89299 0.86418 0.87623 0.90345 0.92320 0.92383 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.41 13.96 21.45 0.30 -62.11 16 2 C 0.00 -0.20 5.47 84.66 0.46 0.26 16 3 Si 0.96 44.22 27.47 68.60 1.88 46.11 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 7 C -0.54 -33.09 9.66 25.60 0.25 -32.84 16 8 H 0.02 1.29 7.99 -2.91 -0.02 1.26 16 9 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 10 C -0.08 -3.49 4.44 30.60 0.14 -3.36 16 11 C -0.12 -3.85 4.72 29.85 0.14 -3.71 16 12 C 0.52 17.38 7.85 87.66 0.69 18.07 16 13 O -0.59 -25.67 16.31 -3.04 -0.05 -25.72 16 14 N -0.62 -15.03 3.33 -808.98 -2.70 -17.72 16 15 C 0.10 1.60 5.68 86.32 0.49 2.09 16 16 C -0.09 -1.07 2.62 -11.08 -0.03 -1.10 16 17 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 18 C -0.08 -0.61 5.59 28.56 0.16 -0.45 16 19 C -0.15 -1.47 9.88 27.13 0.27 -1.21 16 20 C -0.17 -1.93 9.77 26.97 0.26 -1.67 16 21 C -0.09 -1.17 4.65 29.41 0.14 -1.04 16 22 C -0.08 -1.04 3.94 -9.33 -0.04 -1.07 16 23 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 24 C 0.10 2.09 5.97 87.20 0.52 2.61 16 25 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 26 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 27 H 0.03 1.42 7.20 -2.39 -0.02 1.41 16 28 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 29 H 0.03 1.67 8.10 -2.39 -0.02 1.65 16 30 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.12 2.95 7.88 -2.39 -0.02 2.93 16 32 H 0.08 1.19 7.63 -2.39 -0.02 1.17 16 33 H 0.09 1.28 7.55 -2.39 -0.02 1.27 16 34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.09 0.58 8.10 -2.38 -0.02 0.56 16 36 H 0.12 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.11 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 1.01 7.02 -2.39 -0.02 1.00 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.33 7.69 -2.39 -0.02 1.31 16 Total: -1.00 -78.47 324.23 3.93 -74.54 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.92 Total: 8.56 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 3.57 Total: -23.65 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.40 Total: -79.83 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Total: -78.47 3.93 -74.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871525395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.060 kcal (2) G-P(sol) polarization free energy of solvation -78.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds