Wall clock time and date at job start Mon Mar 30 2020 00:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99661 * 2 1 4 4 C 1.38715 * 119.98115 * 0.02562 * 3 2 1 5 5 C 1.38096 * 120.01893 * 179.97438 * 4 3 2 6 6 C 1.38888 * 119.97716 * 0.02562 * 5 4 3 7 7 N 1.39935 * 120.01672 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00203 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47377 * 179.97438 * 8 7 6 10 10 H 1.08993 * 109.47066 * 305.00069 * 9 8 7 11 11 C 1.52997 * 109.46801 * 64.99860 * 9 8 7 12 12 C 1.52997 * 109.47104 * 184.99676 * 9 8 7 13 13 C 1.50693 * 109.47152 * 175.00334 * 12 9 8 14 14 H 1.08011 * 120.00216 * 359.97438 * 13 12 9 15 15 C 1.37880 * 120.00252 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99870 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99879 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47390 * 60.00251 * 17 15 13 19 19 H 1.48504 * 109.46882 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47526 * 299.99759 * 17 15 13 21 21 C 1.38841 * 119.96195 * 359.97438 * 6 5 4 22 22 C 1.50696 * 120.00453 * 180.02562 * 21 6 5 23 23 C 1.38127 * 119.97967 * 359.74390 * 21 6 5 24 24 H 1.08996 * 109.47352 * 299.99796 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99821 * 1 2 3 26 26 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99488 * 359.97438 * 4 3 2 28 28 H 1.07992 * 120.01142 * 180.02562 * 5 4 3 29 29 H 0.96997 * 120.00158 * 179.97438 * 7 6 5 30 30 H 1.09007 * 109.46962 * 299.99935 * 8 7 6 31 31 H 1.09001 * 109.47172 * 59.99620 * 8 7 6 32 32 H 1.09005 * 109.46919 * 179.97438 * 11 9 8 33 33 H 1.09004 * 109.47671 * 299.99764 * 11 9 8 34 34 H 1.09001 * 109.47470 * 60.00231 * 11 9 8 35 35 H 1.08997 * 109.47212 * 295.00020 * 12 9 8 36 36 H 1.09001 * 109.47257 * 54.99858 * 12 9 8 37 37 H 0.96998 * 119.99830 * 180.02562 * 16 15 13 38 38 H 1.09009 * 109.47116 * 90.00336 * 22 21 6 39 39 H 1.09003 * 109.47050 * 209.99473 * 22 21 6 40 40 H 1.08996 * 109.47876 * 330.00315 * 22 21 6 41 41 H 1.08003 * 119.99012 * 180.25576 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2904 2.3749 0.0005 5 6 1.9165 3.6058 0.0011 6 6 3.3035 3.6789 0.0005 7 7 3.9387 4.9258 0.0016 8 6 3.1408 6.1545 0.0039 9 6 4.0728 7.3679 0.0053 10 1 4.7619 7.2957 0.8466 11 6 4.8663 7.4029 -1.3023 12 6 3.2438 8.6474 0.1333 13 6 4.1658 9.8328 0.2582 14 1 5.2361 9.6881 0.2477 15 6 3.6432 11.1023 0.3868 16 7 2.3400 11.2786 0.4000 17 14 4.7862 12.5715 0.5422 18 1 5.6473 12.6588 -0.6645 19 1 3.9816 13.8136 0.6664 20 1 5.6382 12.4106 1.7478 21 6 4.0592 2.5143 0.0000 22 6 5.5642 2.5925 0.0000 23 6 3.4313 1.2840 0.0053 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2120 2.3179 0.0005 28 1 1.3279 4.5112 0.0019 29 1 4.9073 4.9766 0.0016 30 1 2.5112 6.1805 -0.8856 31 1 2.5127 6.1782 0.8944 32 1 5.5299 8.2677 -1.3015 33 1 5.4569 6.4913 -1.3936 34 1 4.1771 7.4751 -2.1437 35 1 2.6184 8.7653 -0.7516 36 1 2.6118 8.5838 1.0191 37 1 1.9723 12.1716 0.4901 38 1 5.9271 2.6108 1.0277 39 1 5.9732 1.7227 -0.5142 40 1 5.8809 3.5003 -0.5133 41 1 4.0191 0.3779 0.0091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876842502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:28 Heat of formation + Delta-G solvation = -33.922718 kcal Electronic energy + Delta-G solvation = -19284.560077 eV Core-core repulsion = 16356.841450 eV Total energy + Delta-G solvation = -2927.718628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10461 -38.24697 -36.26410 -33.63858 -32.51912 -31.93673 -29.26750 -27.34130 -26.67623 -26.53650 -25.57857 -23.13692 -21.48896 -20.91413 -19.25838 -17.65381 -16.98761 -16.51112 -15.95190 -15.68202 -14.81634 -14.56115 -14.52476 -14.17209 -13.72003 -13.40446 -13.12740 -12.90807 -12.56034 -12.50159 -12.24190 -12.05516 -11.91340 -11.69262 -11.58236 -11.13186 -10.93509 -10.79920 -10.68063 -10.42553 -10.33126 -9.90082 -9.34280 -9.25304 -9.07601 -8.70183 -8.38570 -6.86583 -6.03310 -4.05264 1.42232 1.79021 3.30728 3.35642 3.36756 3.37600 3.80207 3.93499 4.43349 4.85436 4.92358 5.04952 5.07426 5.20064 5.32511 5.35021 5.36618 5.44616 5.61681 5.63866 5.70098 5.71065 5.87786 5.92992 6.09442 6.19236 6.27088 6.38571 6.41821 6.50025 6.53729 6.76233 6.85085 6.98988 7.03161 7.44979 7.60201 7.65923 7.74372 7.95288 8.04408 8.37834 9.00224 9.58500 11.08092 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036632 B = 0.003378 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.184383 B = 8286.883322 C = 8905.455829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.325 6.325 3 C 0.057 3.943 4 C -0.159 4.159 5 C -0.160 4.160 6 C 0.196 3.804 7 N -0.742 5.742 8 C 0.127 3.873 9 C -0.096 4.096 10 H 0.061 0.939 11 C -0.132 4.132 12 C 0.031 3.969 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.134 4.134 22 C -0.104 4.104 23 C -0.103 4.103 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.397 0.603 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.046 0.954 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 -19.694 -1.307 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.240 6.240 3 C 0.012 3.988 4 C -0.178 4.178 5 C -0.183 4.183 6 C 0.091 3.909 7 N -0.373 5.373 8 C 0.003 3.997 9 C -0.115 4.115 10 H 0.080 0.920 11 C -0.189 4.189 12 C -0.007 4.007 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.139 4.139 22 C -0.161 4.161 23 C -0.122 4.122 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.233 0.767 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.348 -19.556 -1.296 19.602 hybrid contribution 0.490 1.137 0.098 1.242 sum 0.143 -18.419 -1.198 18.458 Atomic orbital electron populations 1.22932 0.79229 1.03217 1.01077 1.86014 1.20619 1.27208 1.90148 1.18663 0.92087 0.83877 1.04214 1.20950 0.99421 0.91855 1.05604 1.20493 0.92652 0.97661 1.07446 1.17667 0.91612 0.85687 0.95891 1.45033 1.08406 1.02290 1.81547 1.21600 0.94486 0.83228 1.00381 1.21431 0.97431 0.95043 0.97560 0.92014 1.21719 0.99815 0.99974 0.97377 1.19069 0.94780 0.89532 0.97298 1.21158 0.92959 0.91418 1.50004 0.92611 1.25013 0.94978 0.99030 0.95407 1.69949 1.10700 1.22363 1.50449 0.86675 0.80751 0.82041 0.78634 1.20270 1.21308 1.20272 1.19119 0.95569 0.91036 1.08181 1.20587 0.91137 1.02353 1.02027 1.19938 0.91145 0.97111 1.04001 0.93040 0.93057 0.88844 0.85941 0.85603 0.76695 0.92792 0.92715 0.91787 0.95144 0.93481 0.96336 0.96477 0.92928 0.91487 0.91572 0.91925 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.33 -4.01 10.50 -19.76 -0.21 -4.22 16 3 C 0.06 0.76 6.69 -39.24 -0.26 0.50 16 4 C -0.16 -2.07 9.03 -39.46 -0.36 -2.43 16 5 C -0.16 -2.28 9.31 -39.39 -0.37 -2.65 16 6 C 0.20 2.85 6.64 -83.69 -0.56 2.29 16 7 N -0.74 -10.94 5.37 -58.58 -0.31 -11.25 16 8 C 0.13 2.12 4.30 -4.04 -0.02 2.11 16 9 C -0.10 -1.85 2.37 -90.62 -0.22 -2.06 16 10 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 11 C -0.13 -2.36 8.88 37.16 0.33 -2.03 16 12 C 0.03 0.76 4.45 -27.89 -0.12 0.63 16 13 C -0.52 -14.08 8.41 -34.44 -0.29 -14.37 16 14 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.13 -1.76 5.90 -104.44 -0.62 -2.37 16 22 C -0.10 -1.09 9.57 36.00 0.34 -0.75 16 23 C -0.10 -1.33 9.63 -39.46 -0.38 -1.71 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.12 1.33 6.29 -52.49 -0.33 1.00 16 28 H 0.13 1.77 6.73 -52.49 -0.35 1.42 16 29 H 0.40 5.42 5.65 -40.82 -0.23 5.18 16 30 H 0.05 0.91 7.95 -51.93 -0.41 0.50 16 31 H 0.05 0.94 7.95 -51.93 -0.41 0.53 16 32 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 33 H 0.03 0.46 7.18 -51.93 -0.37 0.08 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 39 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.06 0.64 6.54 -51.93 -0.34 0.31 16 41 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -29.93 331.37 -7.92 -37.85 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.49 Total: 2.12 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -1.61 Total: -20.09 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.42 Total: -36.96 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.21 Total: -4.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.93 -7.92 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876842502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.925 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds