Wall clock time and date at job start Mon Mar 30 2020 00:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38292 * 119.97353 * 2 1 4 4 C 1.38244 * 120.11101 * 179.77212 * 3 2 1 5 5 C 1.38170 * 120.05543 * 0.50165 * 4 3 2 6 6 C 1.50703 * 120.02679 * 179.77247 * 5 4 3 7 7 N 1.46899 * 109.47107 * 259.72343 * 6 5 4 8 8 C 1.46904 * 111.00029 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46950 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47312 * 300.00123 * 9 8 7 11 11 C 1.52997 * 109.47169 * 60.00159 * 9 8 7 12 12 C 1.50698 * 109.47092 * 180.02562 * 9 8 7 13 13 H 1.08009 * 119.99873 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00054 * 180.02562 * 12 9 8 15 15 N 1.31504 * 120.00303 * 359.97438 * 14 12 9 16 16 Si 1.86809 * 119.99645 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47069 * 60.00160 * 16 14 12 18 18 H 1.48500 * 109.46785 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47146 * 299.99864 * 16 14 12 20 20 C 1.38706 * 119.94369 * 359.49867 * 5 4 3 21 21 O 1.35907 * 120.05661 * 180.27338 * 20 5 4 22 22 C 1.38127 * 119.97364 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46853 * 269.97637 * 1 2 3 24 24 H 1.09000 * 109.47158 * 29.97867 * 1 2 3 25 25 H 1.08998 * 109.46999 * 149.98296 * 1 2 3 26 26 H 1.07995 * 119.94352 * 0.02562 * 3 2 1 27 27 H 1.07999 * 119.97355 * 180.25002 * 4 3 2 28 28 H 1.09002 * 109.47152 * 139.72431 * 6 5 4 29 29 H 1.09001 * 109.46980 * 19.72531 * 6 5 4 30 30 H 1.00902 * 111.00582 * 303.95889 * 7 6 5 31 31 H 1.08995 * 109.47167 * 300.00240 * 8 7 6 32 32 H 1.09003 * 109.46442 * 60.00214 * 8 7 6 33 33 H 1.09002 * 109.47029 * 60.00405 * 10 9 8 34 34 H 1.09000 * 109.47152 * 180.02562 * 10 9 8 35 35 H 1.08993 * 109.47356 * 300.00089 * 10 9 8 36 36 H 1.09005 * 109.46874 * 60.00300 * 11 9 8 37 37 H 1.09000 * 109.47103 * 179.97438 * 11 9 8 38 38 H 1.09002 * 109.47446 * 299.99763 * 11 9 8 39 39 H 0.96998 * 120.00316 * 180.02562 * 15 14 12 40 40 H 0.96698 * 113.99389 * 89.99972 * 21 20 5 41 41 H 1.08000 * 120.02280 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 0.0048 5 6 4.2752 0.0071 -0.0009 6 6 5.7823 0.0115 -0.0009 7 7 6.2726 -0.2277 -1.3649 8 6 7.7412 -0.2296 -1.4036 9 6 8.2132 -0.4804 -2.8371 10 6 7.6885 -1.8351 -3.3172 11 6 7.6804 0.6254 -3.7504 12 6 9.7196 -0.4830 -2.8768 13 1 10.2840 -0.3223 -1.9700 14 6 10.3775 -0.6906 -4.0706 15 7 9.6904 -0.8868 -5.1745 16 14 12.2449 -0.6945 -4.1194 17 1 12.7610 -1.7690 -3.2338 18 1 12.7031 -0.9366 -5.5111 19 1 12.7551 0.6196 -3.6524 20 6 3.5846 -1.1958 -0.0009 21 8 4.2658 -2.3718 -0.0009 22 6 2.1971 -1.1965 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6566 2.1324 0.0004 27 1 4.1176 2.1381 0.0088 28 1 6.1479 -0.7747 0.6597 29 1 6.1427 0.9782 0.3505 30 1 5.8996 -1.0879 -1.7377 31 1 8.1149 0.7356 -1.0620 32 1 8.1206 -1.0172 -0.7526 33 1 6.5989 -1.8337 -3.2885 34 1 8.0252 -2.0140 -4.3383 35 1 8.0681 -2.6230 -2.6666 36 1 8.0542 1.5906 -3.4084 37 1 8.0170 0.4470 -4.7716 38 1 6.5907 0.6269 -3.7217 39 1 10.1533 -1.0332 -6.0143 40 1 4.4629 -2.7121 0.8825 41 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877583902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:29 Heat of formation + Delta-G solvation = -31.975270 kcal Electronic energy + Delta-G solvation = -19831.866951 eV Core-core repulsion = 16904.232771 eV Total energy + Delta-G solvation = -2927.634180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.97340 -36.90730 -36.75958 -34.35833 -32.35781 -30.66381 -29.85131 -27.78218 -25.47992 -25.16010 -24.49842 -22.82801 -22.55230 -20.79413 -18.39896 -17.88999 -16.28500 -16.01938 -15.57691 -15.21128 -14.82152 -14.38577 -13.95394 -13.76276 -13.64663 -13.37479 -12.71263 -12.59822 -12.37936 -12.10639 -11.72563 -11.69356 -11.60592 -11.37847 -11.04107 -10.91690 -10.61788 -10.56204 -10.31350 -10.10410 -10.01051 -9.31298 -9.04540 -8.76595 -8.58520 -8.43054 -8.23418 -7.59730 -5.85800 -3.96407 1.24538 1.33525 3.35746 3.40413 3.42855 3.59547 4.18861 4.48293 4.75465 4.81917 4.95624 5.14667 5.18352 5.32433 5.39172 5.42063 5.52324 5.63789 5.74734 5.82611 6.00607 6.09074 6.32232 6.40491 6.45850 6.50157 6.63801 6.79780 6.84372 6.97184 7.16529 7.25620 7.45932 7.54180 7.67297 7.80545 7.82454 7.89504 8.08214 8.28487 8.41158 8.61721 9.04960 9.68140 11.14621 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040598 B = 0.003861 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.526880 B = 7250.459012 C = 7323.499411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.080 4.080 3 C -0.131 4.131 4 C -0.084 4.084 5 C -0.100 4.100 6 C 0.102 3.898 7 N -0.679 5.679 8 C 0.076 3.924 9 C 0.069 3.931 10 C -0.131 4.131 11 C -0.118 4.118 12 C -0.507 4.507 13 H 0.051 0.949 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.112 3.888 21 O -0.493 6.493 22 C -0.148 4.148 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.127 0.873 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.344 0.656 31 H 0.055 0.945 32 H 0.012 0.988 33 H 0.011 0.989 34 H 0.082 0.918 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.258 0.742 40 H 0.385 0.615 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.743 1.014 11.911 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.103 4.103 5 C -0.101 4.101 6 C -0.027 4.027 7 N -0.312 5.312 8 C -0.053 4.053 9 C 0.069 3.931 10 C -0.189 4.189 11 C -0.176 4.176 12 C -0.546 4.546 13 H 0.069 0.931 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.204 1.204 20 C 0.067 3.933 21 O -0.303 6.303 22 C -0.166 4.166 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.164 0.836 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.241 0.759 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.773 1.687 10.906 19.251 hybrid contribution 1.357 -0.965 0.887 1.886 sum -14.417 0.722 11.793 18.640 Atomic orbital electron populations 1.20772 0.91175 1.02817 1.02119 1.19732 0.95936 0.92720 0.99667 1.21020 0.94174 0.97434 1.02242 1.20962 0.93759 0.97508 0.98065 1.20290 0.96532 0.92502 1.00751 1.20717 0.89104 1.00710 0.92190 1.60683 1.10201 1.42665 1.17628 1.22162 0.84338 0.98628 1.00143 1.18080 0.94093 0.92493 0.88460 1.21815 0.95519 0.97829 1.03711 1.21632 0.96482 0.96834 1.02670 1.21084 0.90887 1.48742 0.93887 0.93087 1.24886 0.97766 0.95193 0.95722 1.69827 1.34551 1.49161 0.98776 0.86723 0.86338 0.78403 0.76844 1.20497 1.21382 1.20428 1.18346 0.89652 0.85007 1.00278 1.84886 1.76313 1.36039 1.33029 1.21221 0.93323 0.98207 1.03864 0.91320 0.91470 0.91607 0.86027 0.85501 0.95297 0.90909 0.83603 0.92690 0.96957 0.96994 0.89919 0.96268 0.96376 0.90785 0.96122 0.93164 0.75899 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.08 -0.88 5.88 -104.64 -0.62 -1.50 16 3 C -0.13 -1.47 9.70 -39.56 -0.38 -1.86 16 4 C -0.08 -1.08 9.67 -39.60 -0.38 -1.46 16 5 C -0.10 -1.42 5.41 -104.47 -0.56 -1.99 16 6 C 0.10 1.60 5.48 -4.98 -0.03 1.57 16 7 N -0.68 -13.08 5.70 -115.05 -0.66 -13.73 16 8 C 0.08 1.65 4.59 -3.82 -0.02 1.63 16 9 C 0.07 1.74 0.57 -155.66 -0.09 1.65 16 10 C -0.13 -3.26 7.92 37.16 0.29 -2.97 16 11 C -0.12 -3.01 8.09 37.16 0.30 -2.71 16 12 C -0.51 -14.01 8.01 -34.44 -0.28 -14.29 16 13 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 14 C 0.07 1.81 5.15 -17.82 -0.09 1.71 16 15 N -0.88 -25.06 9.35 55.43 0.52 -24.55 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 C 0.11 1.52 6.68 -39.22 -0.26 1.26 16 21 O -0.49 -6.46 12.69 -19.45 -0.25 -6.71 16 22 C -0.15 -1.77 9.64 -39.43 -0.38 -2.15 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 25 H 0.06 0.48 8.08 -51.93 -0.42 0.07 16 26 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.13 1.48 8.03 -52.49 -0.42 1.06 16 28 H 0.03 0.44 7.85 -51.93 -0.41 0.03 16 29 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 30 H 0.34 6.95 6.71 -39.29 -0.26 6.68 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.01 0.26 6.57 -51.93 -0.34 -0.08 16 34 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 2.04 6.07 -51.93 -0.32 1.73 16 38 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.39 3.22 9.06 45.56 0.41 3.63 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -30.09 330.41 -8.36 -38.45 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.80 Total: 6.74 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -2.13 Total: -21.62 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.14 Total: -38.28 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.25 Total: -6.71 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.09 -8.36 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877583902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.472 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds