Wall clock time and date at job start Mon Mar 30 2020 00:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38294 * 119.97461 * 2 1 4 4 C 1.38244 * 120.11199 * 180.30239 * 3 2 1 5 5 C 1.38171 * 120.05436 * 359.44067 * 4 3 2 6 6 C 1.38706 * 119.94402 * 0.28089 * 5 4 3 7 7 O 1.35899 * 120.05784 * 179.97438 * 6 5 4 8 8 C 1.38125 * 119.97454 * 179.74555 * 2 1 3 9 9 C 1.50703 * 120.02166 * 0.02562 * 8 2 1 10 10 N 1.46906 * 109.46793 * 269.97369 * 9 8 2 11 11 C 1.46902 * 110.99602 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46484 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.47076 * 299.99876 * 12 11 10 14 14 C 1.53000 * 109.47415 * 60.00139 * 12 11 10 15 15 C 1.50704 * 109.46904 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99587 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00077 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99960 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00017 * 179.97438 * 17 15 12 20 20 H 1.48510 * 109.46996 * 60.00306 * 19 17 15 21 21 H 1.48500 * 109.47303 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47428 * 300.00619 * 19 17 15 23 23 H 1.09000 * 109.47133 * 270.25376 * 1 2 3 24 24 H 1.09003 * 109.46925 * 30.25419 * 1 2 3 25 25 H 1.09004 * 109.47278 * 150.24953 * 1 2 3 26 26 H 1.08001 * 119.94303 * 0.03884 * 3 2 1 27 27 H 1.08002 * 119.97539 * 179.72689 * 4 3 2 28 28 H 1.07999 * 120.02791 * 180.25957 * 5 4 3 29 29 H 0.96706 * 114.00065 * 89.99795 * 7 6 5 30 30 H 1.09000 * 109.47289 * 29.97681 * 9 8 2 31 31 H 1.09007 * 109.47128 * 149.97800 * 9 8 2 32 32 H 1.00903 * 111.00069 * 303.95741 * 10 9 8 33 33 H 1.08993 * 109.47179 * 299.99773 * 11 10 9 34 34 H 1.09002 * 109.47171 * 60.00940 * 11 10 9 35 35 H 1.08999 * 109.46938 * 60.00477 * 13 12 11 36 36 H 1.09005 * 109.46596 * 180.02562 * 13 12 11 37 37 H 1.08999 * 109.47190 * 300.00334 * 13 12 11 38 38 H 1.09001 * 109.46791 * 59.99823 * 14 12 11 39 39 H 1.08996 * 109.46883 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.46785 * 299.99642 * 14 12 11 41 41 H 0.96997 * 119.99933 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0063 5 6 4.2752 0.0071 -0.0010 6 6 3.5845 -1.1958 0.0049 7 8 4.2657 -2.3718 0.0096 8 6 2.1970 -1.1965 0.0053 9 6 1.4434 -2.5016 0.0105 10 7 1.1986 -2.9200 1.3973 11 6 0.4648 -4.1919 1.4415 12 6 0.2286 -4.5938 2.8988 13 6 1.5748 -4.7567 3.6076 14 6 -0.5895 -3.5083 3.6012 15 6 -0.5236 -5.8989 2.9443 16 1 -0.8047 -6.3924 2.0257 17 6 -0.8521 -6.4633 4.1587 18 7 -0.5094 -5.8625 5.2772 19 14 -1.7851 -8.0806 4.2150 20 1 -0.9913 -9.1341 3.5328 21 1 -2.0143 -8.4708 5.6294 22 1 -3.0919 -7.9224 3.5277 23 1 -0.3633 0.0046 1.0277 24 1 -0.3633 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5100 26 1 1.6565 2.1325 0.0006 27 1 4.1176 2.1381 -0.0108 28 1 5.3552 0.0102 -0.0017 29 1 4.4635 -2.7082 0.8944 30 1 0.4910 -2.3733 -0.5039 31 1 2.0325 -3.2634 -0.5002 32 1 2.0631 -2.9834 1.9138 33 1 -0.4943 -4.0757 0.9371 34 1 1.0475 -4.9652 0.9409 35 1 2.1192 -3.8130 3.5747 36 1 1.4065 -5.0435 4.6456 37 1 2.1576 -5.5300 3.1072 38 1 -1.5485 -3.3923 3.0962 39 1 -0.7581 -3.7949 4.6392 40 1 -0.0450 -2.5646 3.5682 41 1 -0.7408 -6.2594 6.1314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877583938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:44 Heat of formation + Delta-G solvation = -28.962526 kcal Electronic energy + Delta-G solvation = -20166.045851 eV Core-core repulsion = 17238.542313 eV Total energy + Delta-G solvation = -2927.503537 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02103 -36.90133 -36.79259 -34.28139 -32.36629 -31.05869 -29.62922 -26.99527 -25.57252 -25.49377 -25.15083 -23.08420 -21.82222 -20.69681 -18.45808 -17.92790 -16.40059 -16.06068 -15.80479 -15.16832 -14.75987 -14.38005 -14.15764 -13.73108 -13.25578 -13.23243 -12.71671 -12.46452 -12.41699 -12.13139 -11.93536 -11.67781 -11.42039 -11.22781 -11.07340 -10.96639 -10.65367 -10.61319 -10.25592 -10.17320 -10.05405 -9.38418 -9.11551 -8.67652 -8.56504 -8.51071 -8.28315 -7.68065 -5.90798 -4.01198 1.26741 1.35362 3.33071 3.37874 3.40599 3.59891 4.26583 4.44616 4.80359 4.85786 4.95603 5.12532 5.28495 5.34681 5.38226 5.55255 5.70257 5.80260 5.89524 5.93668 6.08187 6.28991 6.32034 6.38692 6.41152 6.46983 6.70993 6.71653 6.86748 6.89020 7.06792 7.16134 7.38181 7.46669 7.67339 7.72112 7.75709 7.83170 7.95449 8.20935 8.34669 8.56184 8.99986 9.63777 11.09665 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033589 B = 0.004403 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.395620 B = 6357.582101 C = 6637.474142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.134 4.134 4 C -0.107 4.107 5 C -0.156 4.156 6 C 0.111 3.889 7 O -0.499 6.499 8 C -0.099 4.099 9 C 0.093 3.907 10 N -0.676 5.676 11 C 0.075 3.925 12 C 0.070 3.930 13 C -0.132 4.132 14 C -0.118 4.118 15 C -0.507 4.507 16 H 0.051 0.949 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.390 0.610 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.333 0.667 33 H 0.056 0.944 34 H 0.014 0.986 35 H 0.009 0.991 36 H 0.083 0.917 37 H 0.019 0.981 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.020 0.980 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.635 12.197 -8.654 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.152 4.152 4 C -0.125 4.125 5 C -0.174 4.174 6 C 0.066 3.934 7 O -0.309 6.309 8 C -0.100 4.100 9 C -0.036 4.036 10 N -0.308 5.308 11 C -0.053 4.053 12 C 0.069 3.931 13 C -0.190 4.190 14 C -0.176 4.176 15 C -0.546 4.546 16 H 0.069 0.931 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.246 0.754 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.152 0.848 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.102 0.898 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.002 12.581 -8.997 16.591 hybrid contribution 0.346 -1.627 0.284 1.687 sum 6.348 10.955 -8.713 15.369 Atomic orbital electron populations 1.20841 0.90695 1.02256 1.03281 1.19695 0.96420 0.91803 0.96972 1.21030 0.94158 0.97537 1.02495 1.20934 0.94207 0.97402 0.99945 1.21313 1.00156 0.91987 1.03961 1.18348 0.89450 0.85252 1.00349 1.84772 1.76081 1.36469 1.33576 1.20094 0.92550 0.95840 1.01497 1.20844 0.98494 0.91940 0.92325 1.60689 1.26038 1.33982 1.10052 1.22179 0.96045 0.86511 1.00588 1.18084 0.92942 0.94003 0.88067 1.21834 0.96777 0.95976 1.04365 1.21631 0.97260 0.95940 1.02774 1.21074 1.35690 1.05664 0.92155 0.93074 1.24875 0.95771 0.97120 0.95751 1.69819 1.46773 1.38585 0.97196 0.86725 0.80475 0.84306 0.76823 1.20478 1.21374 1.20406 0.90120 0.92179 0.90997 0.86040 0.85998 0.85845 0.75389 0.90318 0.94465 0.84818 0.92527 0.96809 0.97195 0.89834 0.96211 0.96327 0.90805 0.96139 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.60 36.00 0.35 -1.02 16 2 C -0.05 -0.63 5.88 -104.65 -0.62 -1.25 16 3 C -0.13 -1.54 9.70 -39.56 -0.38 -1.92 16 4 C -0.11 -1.16 10.04 -39.60 -0.40 -1.56 16 5 C -0.16 -1.86 9.99 -39.43 -0.39 -2.25 16 6 C 0.11 1.51 6.68 -39.22 -0.26 1.25 16 7 O -0.50 -6.56 12.55 -19.42 -0.24 -6.80 16 8 C -0.10 -1.42 5.41 -104.47 -0.56 -1.98 16 9 C 0.09 1.44 5.18 -4.97 -0.03 1.41 16 10 N -0.68 -11.91 5.70 -115.05 -0.66 -12.56 16 11 C 0.07 1.55 4.59 -3.82 -0.02 1.53 16 12 C 0.07 1.66 0.57 -155.65 -0.09 1.58 16 13 C -0.13 -3.07 7.92 37.16 0.29 -2.77 16 14 C -0.12 -2.86 8.10 37.16 0.30 -2.56 16 15 C -0.51 -13.58 8.01 -34.44 -0.28 -13.86 16 16 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 17 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 18 N -0.88 -24.38 9.35 55.43 0.52 -23.86 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.07 0.89 5.94 -51.93 -0.31 0.58 16 26 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.39 3.81 9.06 45.56 0.41 4.23 16 30 H 0.08 1.19 5.94 -51.93 -0.31 0.88 16 31 H 0.04 0.60 7.53 -51.93 -0.39 0.21 16 32 H 0.33 5.81 6.76 -39.29 -0.27 5.55 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 36 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 1.96 6.07 -51.93 -0.32 1.65 16 40 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 41 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -28.60 325.85 -8.24 -36.84 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.57 Total: 7.16 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -2.18 Total: -21.72 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.14 Total: -36.43 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.24 Total: -6.80 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.60 -8.24 -36.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877583938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.876 kcal (2) G-P(sol) polarization free energy of solvation -28.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds