Wall clock time and date at job start Mon Mar 30 2020 00:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38292 * 119.94416 * 2 1 4 4 C 1.38121 * 120.05879 * 180.02562 * 3 2 1 5 5 C 1.38761 * 119.93808 * 0.02562 * 4 3 2 6 6 O 1.35899 * 120.04993 * 179.97438 * 5 4 3 7 7 C 1.38709 * 119.89148 * 0.02562 * 5 4 3 8 8 C 1.50694 * 120.02465 * 179.97438 * 7 5 4 9 9 N 1.46910 * 109.47067 * 284.99650 * 8 7 5 10 10 C 1.46898 * 111.00101 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47092 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46862 * 55.00713 * 11 10 9 13 13 C 1.52997 * 109.47482 * 295.00148 * 11 10 9 14 14 C 1.53006 * 109.47223 * 174.99860 * 11 10 9 15 15 C 1.50695 * 109.47196 * 185.00102 * 14 11 10 16 16 H 1.07999 * 120.00313 * 0.02562 * 15 14 11 17 17 C 1.37882 * 119.99880 * 179.97438 * 15 14 11 18 18 N 1.31508 * 120.00054 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47023 * 60.00414 * 19 17 15 21 21 H 1.48496 * 109.47177 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47330 * 300.00546 * 19 17 15 23 23 C 1.38160 * 119.94361 * 0.25282 * 7 5 4 24 24 H 1.09000 * 109.47730 * 89.99258 * 1 2 3 25 25 H 1.09000 * 109.46639 * 210.00042 * 1 2 3 26 26 H 1.09001 * 109.47013 * 329.99197 * 1 2 3 27 27 H 1.08001 * 119.97135 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.03197 * 179.97438 * 4 3 2 29 29 H 0.96702 * 114.00416 * 270.01990 * 6 5 4 30 30 H 1.09004 * 109.47057 * 165.00243 * 8 7 5 31 31 H 1.08996 * 109.47788 * 44.99585 * 8 7 5 32 32 H 1.00896 * 110.99817 * 56.04942 * 9 8 7 33 33 H 1.09002 * 109.47308 * 60.00022 * 10 9 8 34 34 H 1.09006 * 109.47288 * 300.00665 * 10 9 8 35 35 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 37 37 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 38 38 H 1.09007 * 109.47135 * 305.00448 * 14 11 10 39 39 H 1.08996 * 109.46945 * 64.99955 * 14 11 10 40 40 H 0.97003 * 120.00316 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.97536 * 179.74673 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6324 0.0001 -0.0027 7 6 3.5787 -1.2006 -0.0027 8 6 4.3303 -2.5067 -0.0044 9 7 4.8847 -2.7508 -1.3428 10 6 5.6254 -4.0188 -1.3826 11 6 6.1858 -4.2381 -2.7892 12 1 6.7852 -3.3754 -3.0800 13 6 5.0306 -4.4131 -3.7770 14 6 7.0604 -5.4935 -2.7997 15 6 7.7104 -5.6416 -4.1512 16 1 7.5192 -4.9130 -4.9251 17 6 8.5501 -6.7067 -4.3994 18 7 8.7833 -7.5937 -3.4569 19 14 9.3563 -6.8899 -6.0744 20 1 10.1974 -5.6979 -6.3520 21 1 10.2051 -8.1083 -6.0847 22 1 8.3070 -7.0092 -7.1185 23 6 2.1971 -1.1979 -0.0080 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5140 27 1 1.6559 2.1328 -0.0004 28 1 4.1171 2.1371 -0.0010 29 1 6.0251 0.0008 -0.8864 30 1 3.6512 -3.3170 0.2609 31 1 5.1417 -2.4600 0.7219 32 1 5.4672 -1.9820 -1.6387 33 1 4.9550 -4.8394 -1.1270 34 1 6.4457 -3.9830 -0.6656 35 1 4.4075 -3.5187 -3.7695 36 1 4.4314 -5.2758 -3.4860 37 1 5.4299 -4.5689 -4.7792 38 1 7.8309 -5.4060 -2.0336 39 1 6.4429 -6.3682 -2.5957 40 1 9.3743 -8.3428 -3.6313 41 1 1.6556 -2.1324 -0.0129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877652187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:34 Heat of formation + Delta-G solvation = -46.140206 kcal Electronic energy + Delta-G solvation = -19216.768485 eV Core-core repulsion = 16288.520067 eV Total energy + Delta-G solvation = -2928.248418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.14251 -37.10109 -36.78649 -34.28920 -32.36043 -31.78474 -30.83351 -27.07102 -26.53505 -25.96650 -24.18764 -22.44630 -22.19510 -20.80457 -19.06715 -18.33250 -16.41556 -16.25306 -15.86538 -15.36169 -14.85460 -14.60168 -14.27495 -14.01977 -13.87252 -13.66350 -13.34629 -12.84209 -12.58001 -12.28423 -11.98467 -11.86148 -11.78524 -11.55286 -11.44913 -11.30791 -10.83762 -10.74839 -10.49604 -10.28344 -10.22987 -9.69546 -9.21486 -9.01379 -8.91405 -8.52713 -8.31711 -8.10849 -5.96550 -3.97812 1.07074 1.20353 3.35036 3.39438 3.40569 3.42049 4.13343 4.44370 4.52315 4.66391 4.68868 4.82067 5.11514 5.15119 5.32189 5.38739 5.39148 5.52460 5.59775 5.65612 5.74548 5.85507 5.91040 5.93042 6.15976 6.16544 6.36096 6.41239 6.45460 6.55287 6.67649 6.69631 7.00715 7.18134 7.19526 7.33491 7.50345 7.63175 7.70607 7.86334 8.03561 8.47440 9.08381 9.65449 11.14982 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036003 B = 0.003256 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.530105 B = 8597.583655 C = 8787.540861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.110 4.110 4 C -0.142 4.142 5 C 0.103 3.897 6 O -0.498 6.498 7 C -0.093 4.093 8 C 0.098 3.902 9 N -0.679 5.679 10 C 0.063 3.937 11 C -0.082 4.082 12 H 0.053 0.947 13 C -0.123 4.123 14 C 0.028 3.972 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.089 4.089 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.390 0.610 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.331 0.669 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.053 0.947 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.131 16.460 7.698 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.161 4.161 5 C 0.058 3.942 6 O -0.308 6.308 7 C -0.094 4.094 8 C -0.031 4.031 9 N -0.309 5.309 10 C -0.066 4.066 11 C -0.101 4.101 12 H 0.071 0.929 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.552 4.552 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.108 4.108 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.246 0.754 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.672 15.992 8.108 23.168 hybrid contribution 1.497 0.056 -0.897 1.746 sum -13.175 16.048 7.211 21.980 Atomic orbital electron populations 1.20770 0.91078 1.02669 1.02404 1.19928 0.96209 0.93042 1.00557 1.20864 0.93484 0.97617 1.00877 1.21360 0.94564 0.97649 1.02492 1.18339 0.82906 0.91843 1.01081 1.84802 1.16029 1.96409 1.33600 1.20186 0.94067 0.94642 1.00472 1.20794 0.97696 0.93306 0.91309 1.60661 1.41067 1.05395 1.23810 1.22190 0.95362 0.90365 0.98641 1.21199 0.96568 1.00550 0.91762 0.92897 1.21589 0.97243 0.99617 0.99551 1.19116 0.93724 0.91198 0.96947 1.21199 1.26791 1.08956 0.98235 0.92628 1.25021 0.96771 0.96003 0.96746 1.69953 1.37389 1.13510 1.32839 0.86688 0.79420 0.77360 0.84706 1.20317 1.21377 1.20264 1.20852 0.92819 0.97806 0.99316 0.91113 0.91493 0.91682 0.85909 0.85593 0.75422 0.90358 0.93872 0.85137 0.91419 0.95552 0.93999 0.94146 0.92784 0.96914 0.96554 0.93033 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.10 -0.95 5.88 -104.60 -0.62 -1.57 16 3 C -0.11 -1.05 9.69 -39.60 -0.38 -1.43 16 4 C -0.14 -1.48 9.99 -39.43 -0.39 -1.88 16 5 C 0.10 1.23 6.56 -39.21 -0.26 0.97 16 6 O -0.50 -5.73 12.46 -19.42 -0.24 -5.97 16 7 C -0.09 -1.14 5.43 -104.48 -0.57 -1.71 16 8 C 0.10 1.29 5.44 -4.97 -0.03 1.26 16 9 N -0.68 -9.89 5.94 -115.06 -0.68 -10.57 16 10 C 0.06 1.09 5.07 -3.83 -0.02 1.07 16 11 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 12 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 13 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 15 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 16 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.09 -0.99 9.32 -39.61 -0.37 -1.36 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.39 3.14 8.41 45.56 0.38 3.52 16 30 H 0.08 1.00 7.95 -51.93 -0.41 0.58 16 31 H 0.04 0.60 8.01 -51.93 -0.42 0.18 16 32 H 0.33 4.50 7.55 -39.29 -0.30 4.21 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 1.26 8.00 -52.48 -0.42 0.84 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -31.37 338.89 -8.86 -40.23 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.08 Total: 2.53 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.68 Total: -21.68 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.05 Total: -36.97 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.24 Total: -5.97 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.37 -8.86 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877652187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.909 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds