Wall clock time and date at job start Mon Mar 30 2020 00:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38292 * 119.94416 * 2 1 4 4 C 1.38121 * 120.05879 * 180.02562 * 3 2 1 5 5 C 1.38761 * 119.93808 * 0.02562 * 4 3 2 6 6 O 1.35899 * 120.04993 * 179.97438 * 5 4 3 7 7 C 1.38709 * 119.89148 * 0.02562 * 5 4 3 8 8 C 1.50694 * 120.02465 * 179.97438 * 7 5 4 9 9 N 1.46910 * 109.47067 * 284.99650 * 8 7 5 10 10 C 1.46898 * 111.00101 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47092 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46862 * 55.00713 * 11 10 9 13 13 C 1.52997 * 109.47482 * 295.00148 * 11 10 9 14 14 C 1.53006 * 109.47223 * 174.99860 * 11 10 9 15 15 C 1.50695 * 109.47196 * 185.00102 * 14 11 10 16 16 H 1.07999 * 120.00313 * 0.02562 * 15 14 11 17 17 C 1.37882 * 119.99880 * 179.97438 * 15 14 11 18 18 N 1.31508 * 120.00054 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47023 * 60.00414 * 19 17 15 21 21 H 1.48496 * 109.47177 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47330 * 300.00546 * 19 17 15 23 23 C 1.38160 * 119.94361 * 0.25282 * 7 5 4 24 24 H 1.09000 * 109.47730 * 89.99258 * 1 2 3 25 25 H 1.09000 * 109.46639 * 210.00042 * 1 2 3 26 26 H 1.09001 * 109.47013 * 329.99197 * 1 2 3 27 27 H 1.08001 * 119.97135 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.03197 * 179.97438 * 4 3 2 29 29 H 0.96702 * 114.00416 * 270.01990 * 6 5 4 30 30 H 1.09004 * 109.47057 * 165.00243 * 8 7 5 31 31 H 1.08996 * 109.47788 * 44.99585 * 8 7 5 32 32 H 1.00896 * 110.99817 * 56.04942 * 9 8 7 33 33 H 1.09002 * 109.47308 * 60.00022 * 10 9 8 34 34 H 1.09006 * 109.47288 * 300.00665 * 10 9 8 35 35 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 37 37 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 38 38 H 1.09007 * 109.47135 * 305.00448 * 14 11 10 39 39 H 1.08996 * 109.46945 * 64.99955 * 14 11 10 40 40 H 0.97003 * 120.00316 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.97536 * 179.74673 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6324 0.0001 -0.0027 7 6 3.5787 -1.2006 -0.0027 8 6 4.3303 -2.5067 -0.0044 9 7 4.8847 -2.7508 -1.3428 10 6 5.6254 -4.0188 -1.3826 11 6 6.1858 -4.2381 -2.7892 12 1 6.7852 -3.3754 -3.0800 13 6 5.0306 -4.4131 -3.7770 14 6 7.0604 -5.4935 -2.7997 15 6 7.7104 -5.6416 -4.1512 16 1 7.5192 -4.9130 -4.9251 17 6 8.5501 -6.7067 -4.3994 18 7 8.7833 -7.5937 -3.4569 19 14 9.3563 -6.8899 -6.0744 20 1 10.1974 -5.6979 -6.3520 21 1 10.2051 -8.1083 -6.0847 22 1 8.3070 -7.0092 -7.1185 23 6 2.1971 -1.1979 -0.0080 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5140 27 1 1.6559 2.1328 -0.0004 28 1 4.1171 2.1371 -0.0010 29 1 6.0251 0.0008 -0.8864 30 1 3.6512 -3.3170 0.2609 31 1 5.1417 -2.4600 0.7219 32 1 5.4672 -1.9820 -1.6387 33 1 4.9550 -4.8394 -1.1270 34 1 6.4457 -3.9830 -0.6656 35 1 4.4075 -3.5187 -3.7695 36 1 4.4314 -5.2758 -3.4860 37 1 5.4299 -4.5689 -4.7792 38 1 7.8309 -5.4060 -2.0336 39 1 6.4429 -6.3682 -2.5957 40 1 9.3743 -8.3428 -3.6313 41 1 1.6556 -2.1324 -0.0129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877652187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:34 Heat of formation + Delta-G solvation = -66.204641 kcal Electronic energy + Delta-G solvation = -19217.638544 eV Core-core repulsion = 16288.520067 eV Total energy + Delta-G solvation = -2929.118477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96881 -38.31783 -37.83056 -35.83906 -34.16723 -32.58252 -31.97689 -28.92755 -27.59150 -26.99727 -25.73105 -23.91290 -23.24704 -21.70276 -20.70719 -19.16170 -18.49001 -17.24047 -16.74597 -16.64548 -16.33534 -15.96805 -15.52258 -15.28269 -14.86423 -14.56952 -14.31218 -14.27343 -13.91833 -13.47507 -13.36015 -13.14102 -13.05389 -12.74929 -12.63831 -12.49287 -12.43382 -12.33047 -12.20485 -11.93682 -11.49498 -11.33269 -11.09975 -10.92428 -10.52691 -9.85143 -9.41104 -9.24015 -8.17028 -6.26380 0.27478 0.40021 1.40584 1.43411 1.51060 2.42401 2.61140 3.16375 3.33122 3.37856 3.80301 3.90752 4.03968 4.14506 4.27131 4.38616 4.45760 4.51396 4.54903 4.65671 4.82958 4.87420 4.88906 4.91543 4.93607 5.02071 5.13249 5.25208 5.28269 5.39659 5.45724 5.50678 5.53747 5.57505 5.67925 5.80740 5.88829 5.93293 6.01088 6.30855 6.40994 6.80059 6.89624 7.41927 8.94952 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036003 B = 0.003256 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.530105 B = 8597.583655 C = 8787.540861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.109 4.109 4 C -0.149 4.149 5 C 0.088 3.912 6 O -0.511 6.511 7 C -0.111 4.111 8 C 0.104 3.896 9 N -0.672 5.672 10 C 0.076 3.924 11 C -0.073 4.073 12 H 0.055 0.945 13 C -0.113 4.113 14 C 0.033 3.967 15 C -0.530 4.530 16 H 0.062 0.938 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.100 4.100 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.401 0.599 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.339 0.661 33 H 0.063 0.937 34 H 0.018 0.982 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.038 0.962 38 H -0.015 1.015 39 H -0.010 1.010 40 H 0.262 0.738 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 18.283 6.866 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.127 4.127 4 C -0.167 4.167 5 C 0.044 3.956 6 O -0.323 6.323 7 C -0.112 4.112 8 C -0.025 4.025 9 N -0.303 5.303 10 C -0.053 4.053 11 C -0.092 4.092 12 H 0.074 0.926 13 C -0.170 4.170 14 C -0.005 4.005 15 C -0.568 4.568 16 H 0.080 0.920 17 C -0.200 4.200 18 N -0.577 5.577 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.119 4.119 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.167 0.833 28 H 0.158 0.842 29 H 0.259 0.741 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.157 0.843 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.004 0.996 39 H 0.008 0.992 40 H 0.071 0.929 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.936 17.838 7.270 25.000 hybrid contribution 1.849 -0.466 -0.588 1.995 sum -14.087 17.372 6.682 23.343 Atomic orbital electron populations 1.20821 0.89130 1.03734 1.03108 1.20265 0.97700 0.92632 0.99511 1.21226 0.93280 0.98682 0.99478 1.21596 0.95216 0.97702 1.02199 1.18526 0.83018 0.92338 1.01757 1.84766 1.16218 1.96456 1.34869 1.20148 0.94631 0.94094 1.02348 1.20723 0.97418 0.94343 0.89971 1.60586 1.40334 1.04388 1.25023 1.21886 0.95178 0.91891 0.96337 1.21005 0.96248 0.97832 0.94085 0.92629 1.21481 0.96845 1.00541 0.98116 1.19008 0.93351 0.92798 0.95342 1.21619 1.26851 1.09106 0.99205 0.91981 1.25965 0.97486 0.95669 1.00895 1.70096 1.38253 1.14193 1.35177 0.85556 0.78547 0.77590 0.79705 1.19180 1.21092 1.19187 1.21037 0.92505 0.98851 0.99513 0.90460 0.91015 0.90129 0.83287 0.84156 0.74054 0.90136 0.94899 0.84345 0.91804 0.96408 0.91566 0.94629 0.94288 0.99646 0.99207 0.92941 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16 2 C -0.10 -1.76 5.88 -19.85 -0.12 -1.87 16 3 C -0.11 -1.78 9.69 22.25 0.22 -1.57 16 4 C -0.15 -2.83 9.99 22.37 0.22 -2.60 16 5 C 0.09 2.01 6.56 22.51 0.15 2.16 16 6 O -0.51 -11.44 12.46 -92.42 -1.15 -12.59 16 7 C -0.11 -2.64 5.43 -19.77 -0.11 -2.75 16 8 C 0.10 2.70 5.44 85.55 0.47 3.17 16 9 N -0.67 -19.10 5.94 -517.92 -3.08 -22.17 16 10 C 0.08 2.65 5.07 86.30 0.44 3.09 16 11 C -0.07 -2.98 2.48 -10.79 -0.03 -3.00 16 12 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 13 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 14 C 0.03 1.73 4.45 29.85 0.13 1.86 16 15 C -0.53 -30.10 8.41 25.60 0.22 -29.88 16 16 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 17 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 18 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 19 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C -0.10 -2.10 9.32 22.25 0.21 -1.89 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 26 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 29 H 0.40 6.21 8.41 -74.06 -0.62 5.58 16 30 H 0.08 2.02 7.95 -2.39 -0.02 2.00 16 31 H 0.03 0.92 8.01 -2.39 -0.02 0.90 16 32 H 0.34 8.88 7.55 -89.70 -0.68 8.20 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.02 0.64 8.14 -2.38 -0.02 0.63 16 35 H 0.07 2.20 7.75 -2.39 -0.02 2.18 16 36 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.58 6.95 -2.38 -0.02 1.57 16 38 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.13 2.49 8.00 -2.91 -0.02 2.46 16 Total: -1.00 -67.30 338.89 1.40 -65.89 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -0.29 Total: 16.94 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 3.61 Total: -37.24 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -2.79 Total: -79.66 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.15 Total: -12.59 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.30 1.40 -65.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877652187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.310 kcal (2) G-P(sol) polarization free energy of solvation -67.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds