Wall clock time and date at job start Mon Mar 30 2020 00:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38294 * 119.94468 * 2 1 4 4 C 1.38125 * 120.05568 * 180.02562 * 3 2 1 5 5 C 1.38746 * 119.94430 * 359.97438 * 4 3 2 6 6 O 1.35903 * 120.05400 * 179.97438 * 5 4 3 7 7 C 1.38715 * 119.89317 * 359.97438 * 5 4 3 8 8 C 1.50696 * 120.03045 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.46868 * 285.00037 * 8 7 5 10 10 C 1.46897 * 111.00155 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47460 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47183 * 305.00348 * 11 10 9 13 13 C 1.52999 * 109.47141 * 65.00083 * 11 10 9 14 14 C 1.53004 * 109.47188 * 185.00295 * 11 10 9 15 15 C 1.50699 * 109.46847 * 175.00072 * 14 11 10 16 16 H 1.08002 * 120.00511 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99783 * 179.97438 * 15 14 11 18 18 N 1.31514 * 119.99573 * 180.27665 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 C 1.38164 * 119.94004 * 0.25764 * 7 5 4 24 24 H 1.09003 * 109.47239 * 90.00648 * 1 2 3 25 25 H 1.08999 * 109.47163 * 210.00373 * 1 2 3 26 26 H 1.08996 * 109.47359 * 330.00489 * 1 2 3 27 27 H 1.07997 * 119.97035 * 359.96993 * 3 2 1 28 28 H 1.08002 * 120.02058 * 179.97438 * 4 3 2 29 29 H 0.96699 * 113.99190 * 270.01428 * 6 5 4 30 30 H 1.09000 * 109.46869 * 165.00413 * 8 7 5 31 31 H 1.09001 * 109.47478 * 44.99793 * 8 7 5 32 32 H 1.00902 * 111.00465 * 303.95679 * 9 8 7 33 33 H 1.08999 * 109.46951 * 59.99895 * 10 9 8 34 34 H 1.09002 * 109.47543 * 300.00263 * 10 9 8 35 35 H 1.09001 * 109.47203 * 300.00417 * 13 11 10 36 36 H 1.08998 * 109.46866 * 60.00071 * 13 11 10 37 37 H 1.08998 * 109.47348 * 179.97438 * 13 11 10 38 38 H 1.08992 * 109.47264 * 55.00246 * 14 11 10 39 39 H 1.09005 * 109.46510 * 294.99833 * 14 11 10 40 40 H 0.97004 * 119.99485 * 179.72881 * 18 17 15 41 41 H 1.07997 * 119.97035 * 179.74398 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2010 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6324 0.0001 -0.0016 7 6 3.5787 -1.2006 0.0005 8 6 4.3303 -2.5067 0.0000 9 7 4.8837 -2.7526 -1.3384 10 6 5.6254 -4.0200 -1.3768 11 6 6.1848 -4.2412 -2.7836 12 1 5.3732 -4.1904 -3.5095 13 6 7.2184 -3.1578 -3.0976 14 6 6.8497 -5.6173 -2.8575 15 6 7.2917 -5.8861 -4.2728 16 1 7.1164 -5.1492 -5.0426 17 6 7.9210 -7.0726 -4.5849 18 7 8.3117 -7.3050 -5.8190 19 14 8.2262 -8.3464 -3.2530 20 1 7.0657 -9.2697 -3.1760 21 1 9.4523 -9.1185 -3.5782 22 1 8.4032 -7.6637 -1.9463 23 6 2.1971 -1.1979 -0.0038 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.6559 2.1328 -0.0005 28 1 4.1170 2.1372 -0.0010 29 1 6.0249 0.0000 -0.8853 30 1 3.6514 -3.3166 0.2668 31 1 5.1423 -2.4591 0.7256 32 1 4.1573 -2.7370 -2.0386 33 1 4.9559 -4.8407 -1.1192 34 1 6.4463 -3.9825 -0.6607 35 1 6.7447 -2.1775 -3.0449 36 1 8.0299 -3.2086 -2.3717 37 1 7.6173 -3.3156 -4.0996 38 1 6.1375 -6.3820 -2.5478 39 1 7.7159 -5.6381 -2.1961 40 1 8.7579 -8.1380 -6.0377 41 1 1.6558 -2.1324 -0.0071 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877652188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:37 Heat of formation + Delta-G solvation = -42.442370 kcal Electronic energy + Delta-G solvation = -19270.812729 eV Core-core repulsion = 16342.724662 eV Total energy + Delta-G solvation = -2928.088067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07810 -37.00163 -36.86558 -34.38286 -32.33537 -31.78075 -30.92936 -27.59655 -26.62016 -26.00710 -24.17051 -22.38601 -21.89123 -20.79849 -19.12067 -18.25071 -16.78018 -16.31257 -15.79597 -15.27731 -14.89484 -14.75160 -14.18167 -14.03882 -13.81883 -13.65994 -13.27102 -12.87088 -12.71811 -12.67591 -12.20033 -11.78312 -11.73647 -11.69761 -11.61754 -11.34044 -10.95031 -10.70816 -10.45089 -10.35502 -9.91626 -9.65340 -9.46538 -9.06744 -9.00442 -8.50785 -8.48716 -8.22170 -6.01293 -3.98130 1.09550 1.16624 3.31818 3.39554 3.41780 3.43514 4.26624 4.40635 4.47655 4.63709 4.69317 4.77179 5.08795 5.09482 5.32279 5.34886 5.36763 5.48055 5.52776 5.60219 5.68206 5.77165 5.86244 5.92655 6.03077 6.14014 6.30018 6.36901 6.41671 6.42925 6.58060 6.69486 6.85276 7.02912 7.13948 7.23031 7.30184 7.48160 7.57804 7.71870 7.83792 8.58237 9.04496 9.61730 11.12183 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034344 B = 0.003424 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.073772 B = 8176.442243 C = 8417.571699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.107 4.107 4 C -0.148 4.148 5 C 0.128 3.872 6 O -0.494 6.494 7 C -0.104 4.104 8 C 0.101 3.899 9 N -0.681 5.681 10 C 0.062 3.938 11 C -0.073 4.073 12 H 0.059 0.941 13 C -0.123 4.123 14 C -0.009 4.009 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.100 4.100 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.397 0.603 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.338 0.662 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.008 0.992 39 H 0.016 0.984 40 H 0.262 0.738 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 15.812 13.015 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.125 4.125 4 C -0.166 4.166 5 C 0.083 3.917 6 O -0.305 6.305 7 C -0.105 4.105 8 C -0.028 4.028 9 N -0.312 5.312 10 C -0.067 4.067 11 C -0.092 4.092 12 H 0.077 0.923 13 C -0.180 4.180 14 C -0.047 4.047 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.119 4.119 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.254 0.746 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.155 0.845 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.026 0.974 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.891 16.043 13.628 24.684 hybrid contribution -0.409 -1.467 0.104 1.527 sum -13.300 14.576 13.732 24.040 Atomic orbital electron populations 1.20761 0.91153 1.02638 1.02335 1.19873 0.96117 0.93022 1.01111 1.20873 0.93557 0.97554 1.00532 1.21424 0.94526 0.97869 1.02818 1.18249 0.83400 0.91304 0.98768 1.84700 1.15448 1.96285 1.34112 1.20212 0.93482 0.95223 1.01533 1.20762 0.97247 0.91839 0.92920 1.60502 1.30088 1.36392 1.04189 1.22192 0.96804 0.87944 0.99724 1.21005 0.97907 0.97286 0.93033 0.92294 1.21585 0.97895 0.96901 1.01667 1.19614 0.95312 0.91769 0.98022 1.21135 1.37462 1.03146 0.93300 0.90839 1.25034 0.95293 0.98138 0.95152 1.69917 1.40893 1.25417 1.18259 0.86805 0.77748 0.81808 0.83056 1.20460 1.21473 1.19049 1.20884 0.92994 0.97754 1.00283 0.91192 0.91619 0.91658 0.85948 0.85567 0.74577 0.94841 0.89823 0.84459 0.95809 0.91377 0.93834 0.94146 0.92279 0.97421 0.96581 0.92836 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.10 -0.96 5.88 -104.60 -0.62 -1.57 16 3 C -0.11 -1.00 9.69 -39.60 -0.38 -1.38 16 4 C -0.15 -1.53 9.99 -39.44 -0.39 -1.92 16 5 C 0.13 1.52 6.68 -39.22 -0.26 1.26 16 6 O -0.49 -5.95 12.84 -19.43 -0.25 -6.20 16 7 C -0.10 -1.22 5.41 -104.47 -0.56 -1.78 16 8 C 0.10 1.25 5.42 -4.98 -0.03 1.22 16 9 N -0.68 -9.21 5.94 -115.06 -0.68 -9.89 16 10 C 0.06 0.99 5.07 -3.83 -0.02 0.97 16 11 C -0.07 -1.42 2.48 -90.62 -0.22 -1.65 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.12 -2.30 8.89 37.16 0.33 -1.97 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 15 C -0.51 -14.48 8.96 -34.44 -0.31 -14.79 16 16 H 0.07 2.23 7.30 -52.49 -0.38 1.84 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 18 N -0.91 -28.05 13.96 55.43 0.77 -27.28 16 19 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 23 C -0.10 -1.05 9.32 -39.60 -0.37 -1.42 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.40 3.80 9.06 45.56 0.41 4.21 16 30 H 0.03 0.39 7.95 -51.93 -0.41 -0.02 16 31 H 0.08 1.11 8.01 -51.93 -0.42 0.70 16 32 H 0.34 4.47 8.72 -39.29 -0.34 4.13 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.04 0.71 7.75 -51.93 -0.40 0.30 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 38 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.12 1.12 8.00 -52.49 -0.42 0.70 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -31.11 337.57 -8.47 -39.59 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.06 Total: 3.43 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -2.67 Total: -21.97 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.09 Total: -37.17 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.25 Total: -6.20 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.11 -8.47 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877652188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.855 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds